3TUIA

Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
216
structure length
216
Chain Sequence
MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/transport protein
molecule keywords D-methionine transport system permease protein metI
publication title Inward facing conformations of the MetNI methionine ABC transporter: Implications for the mechanism of transinhibition.
pubmed doi rcsb
source organism Escherichia coli
total genus 84
structure length 216
sequence length 216
chains with identical sequence B, E, F
ec nomenclature
pdb deposition date 2011-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3720.10 Mainly Alpha Orthogonal Bundle MetI-like fold MetI-like 3tuiA00
3PV0F 4KI0G 3PUWG 3RLFG 4KHZG 4YMUC 3TUIA 4XTCM 4XIGN 3TUZA 4JBWG 4YMVC 2R6GG 3PUZG 4YMSC 3PV0G 3PUXF 3PUVF 4YMWC 4XIGM 3PUYF 2ONKC 4TQUN 3TUJA 3PUWF 3RLFF 4KI0F 4KHZF 3D31C 3PUVG 4TQUM 3PUXG 3DHWA 4XTCN 4YMTB 3PUYG 4JBWF 2R6GF 3PUZF
chains in the Genus database with same CATH superfamily
3PV0F 4KI0G 3PUWG 3RLFG 4KHZG 4YMUC 3TUIA 4XTCM 4XIGN 3TUZA 4JBWG 4YMVC 2R6GG 3PUZG 4YMSC 3PV0G 3PUXF 3PUVF 4YMWC 4XIGM 3PUYF 2ONKC 4TQUN 3TUJA 3PUWF 3RLFF 4KI0F 4KHZF 3D31C 3PUVG 4TQUM 3PUXG 3DHWA 4XTCN 4YMTB 3PUYG 4JBWF 2R6GF 3PUZF
chains in the Genus database with same CATH topology
3PV0F 4KI0G 3PUWG 3RLFG 4KHZG 4YMUC 3TUIA 4XTCM 4XIGN 3TUZA 4JBWG 4YMVC 2R6GG 3PUZG 4YMSC 3PV0G 3PUXF 3PUVF 4YMWC 4XIGM 3PUYF 2ONKC 4TQUN 3TUJA 3PUWF 3RLFF 4KI0F 4KHZF 3D31C 3PUVG 4TQUM 3PUXG 3DHWA 4XTCN 4YMTB 3PUYG 4JBWF 2R6GF 3PUZF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PV0 F;  4KI0 G;  3PUW G;  3RLF G;  4KHZ G;  4YMU C;  3TUI A;  4XTC M;  4XIG N;  3TUZ A;  4JBW G;  4YMV C;  2R6G G;  3PUZ G;  4YMS C;  3PV0 G;  3PUX F;  3PUV F;  4YMW C;  4XIG M;  3PUY F;  2ONK C;  4TQU N;  3TUJ A;  3PUW F;  3RLF F;  4KI0 F;  4KHZ F;  3D31 C;  3PUV G;  4TQU M;  3PUX G;  3DHW A;  4XTC N;  4YMT B;  3PUY G;  4JBW F;  2R6G F;  3PUZ F; 
#chains in the Genus database with same CATH topology
 3PV0 F;  4KI0 G;  3PUW G;  3RLF G;  4KHZ G;  4YMU C;  3TUI A;  4XTC M;  4XIG N;  3TUZ A;  4JBW G;  4YMV C;  2R6G G;  3PUZ G;  4YMS C;  3PV0 G;  3PUX F;  3PUV F;  4YMW C;  4XIG M;  3PUY F;  2ONK C;  4TQU N;  3TUJ A;  3PUW F;  3RLF F;  4KI0 F;  4KHZ F;  3D31 C;  3PUV G;  4TQU M;  3PUX G;  3DHW A;  4XTC N;  4YMT B;  3PUY G;  4JBW F;  2R6G F;  3PUZ F; 
#chains in the Genus database with same CATH homology
 3PV0 F;  4KI0 G;  3PUW G;  3RLF G;  4KHZ G;  4YMU C;  3TUI A;  4XTC M;  4XIG N;  3TUZ A;  4JBW G;  4YMV C;  2R6G G;  3PUZ G;  4YMS C;  3PV0 G;  3PUX F;  3PUV F;  4YMW C;  4XIG M;  3PUY F;  2ONK C;  4TQU N;  3TUJ A;  3PUW F;  3RLF F;  4KI0 F;  4KHZ F;  3D31 C;  3PUV G;  4TQU M;  3PUX G;  3DHW A;  4XTC N;  4YMT B;  3PUY G;  4JBW F;  2R6G F;  3PUZ F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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