3V2AA

Vegfr-2/vegf-a complex structure
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
95
structure length
95
Chain Sequence
EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/signaling protein
molecule keywords Vascular endothelial growth factor receptor 2
publication title Thermodynamic and structural description of allosterically regulated VEGFR-2 dimerization.
pubmed doi rcsb
source organism Homo sapiens
total genus 13
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00341 PDGF PDGF/VEGF domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 3v2aA00
5BQ8B 3QTKA 1NYUB 1REUA 3BMPA 1VPPV 2H64A 5AEJA 1WAQA 1WWWV 1XWDB 3IJ2A 3BDYV 4MPLA 1KTZA 2QJ9A 2QR0C 3JVFA 4QHUC 1TGKA 5BQCA 4WPBA 4LXRJ 4XPJA 3S1BV 4YCIC 1TZIV 4UI2B 1S4YB 1VPFA 2B0UA 3EVSB 4LXSJ 1HCNA 4MQWB 1KLCA 2QCQA 4UI0A 3FUBB 1QTYR 2ASKA 1JPYA 2VXSA 1MJVA 1QFWA 2V5EB 2C7WA 5F3HI 5HI5A 2GOOA 2X1WA 5E4GA 1FZVA 1KLAA 5BQEB 1REWA 1HRPA 1B98A 5FV1V 2XV7A 2R53A 5HK5A 3V2AA 1BJ1V 5BQ8D 2ARPA 1WQ8A 2VPFA 1RV6V 1FL7A 5HHXA 3S1KV 4UHZA 4EDWV 1E9JA 1WQ9A 5BPUA 5JZ7A 4HQUA 2GYRA 4HR9A 2ARVA 4KV5A 1BNDB 5HI3A 5HHDA 2H62A 2KD3A 3BK3A 2TGIA 4GLSE 4KXZA 1LXIA 4AY9A 1HD4A 5HK5E 1CZ8V 3MJGA 1PDGA 1B8MA 4EC7A 2QJAA 3MJKA 4QCIC 4HQXA 3KFDA 4EFVA 4UI1A 3SEKB 1BTGA 2GNNA 5HHVA 1SG1A 5HHCA 5BQ8A 2QJBA 1BETA 5BQBA 2GYZA 4EAXA 1TZHV 1ZKZA 1XWDA 1QFWB 5HI4A 2FJHV 4N1DA 1DZ7A 2QCWA 3B4VA 1KATW 1HRPB 4ZBNA 1BMPA 4YCGC 2VWEA 2FJGV 1AOCA 2PJYA 2X1XE 1NT3A 4KZNA 3HH2A 4MIDA 4EDXV 4MQWA 2R52A 2P6AA 2BHKA 3V6BA 1FL7B 1WQ9B 1M4UL 4GLNE 1MKGA 4FAOA 1M4UA 2XACA 5BQEA 2IFGE 1FLTV 4UHYA 1HCNB 1B8KA 5F3BC 1TGJA 1ES7A 3QB4A 4ZFFC 3EO1C 4BV4L 4AY9B 1SGFB 4HSAA 2GH0C 3RJRA 5FV2V 3P9WA 1B8MB 4X1JA 1HCFA 1NYSB 1BNDA 4QAFC 1MKKA 1LX5A 3E07A 3BUKA 1AGQA 1TFGA
chains in the Genus database with same CATH superfamily
5BQ8B 3QTKA 1NYUB 1REUA 3BMPA 1VPPV 2H64A 5AEJA 1WAQA 1WWWV 1XWDB 3IJ2A 3BDYV 4MPLA 1KTZA 2QJ9A 2QR0C 3JVFA 4QHUC 1TGKA 5BQCA 4WPBA 4LXRJ 4XPJA 3S1BV 4YCIC 1TZIV 4UI2B 1S4YB 1VPFA 2B0UA 3EVSB 4LXSJ 1HCNA 4MQWB 1KLCA 2QCQA 4UI0A 3FUBB 1QTYR 2ASKA 1JPYA 2VXSA 1MJVA 1QFWA 2V5EB 2C7WA 5F3HI 5HI5A 2GOOA 2X1WA 5E4GA 1FZVA 1KLAA 5BQEB 1REWA 1HRPA 1B98A 5FV1V 2XV7A 2R53A 5HK5A 3V2AA 1BJ1V 5BQ8D 2ARPA 1WQ8A 2VPFA 1RV6V 1FL7A 5HHXA 3S1KV 4UHZA 4EDWV 1E9JA 1WQ9A 5BPUA 5JZ7A 4HQUA 2GYRA 4HR9A 2ARVA 4KV5A 1BNDB 5HI3A 5HHDA 2H62A 2KD3A 3BK3A 2TGIA 4GLSE 4KXZA 1LXIA 4AY9A 1HD4A 5HK5E 1CZ8V 3MJGA 1PDGA 1B8MA 4EC7A 2QJAA 3MJKA 4QCIC 4HQXA 3KFDA 4EFVA 4UI1A 3SEKB 1BTGA 2GNNA 5HHVA 1SG1A 5HHCA 5BQ8A 2QJBA 1BETA 5BQBA 2GYZA 4EAXA 1TZHV 1ZKZA 1XWDA 1QFWB 5HI4A 2FJHV 4N1DA 1DZ7A 2QCWA 3B4VA 1KATW 1HRPB 4ZBNA 1BMPA 4YCGC 2VWEA 2FJGV 1AOCA 2PJYA 2X1XE 1NT3A 4KZNA 3HH2A 4MIDA 4EDXV 4MQWA 2R52A 2P6AA 2BHKA 3V6BA 1FL7B 1WQ9B 1M4UL 4GLNE 1MKGA 4FAOA 1M4UA 2XACA 5BQEA 2IFGE 1FLTV 4UHYA 1HCNB 1B8KA 5F3BC 1TGJA 1ES7A 3QB4A 4ZFFC 3EO1C 4BV4L 4AY9B 1SGFB 4HSAA 2GH0C 3RJRA 5FV2V 3P9WA 1B8MB 4X1JA 1HCFA 1NYSB 1BNDA 4QAFC 1MKKA 1LX5A 3E07A 3BUKA 1AGQA 1TFGA
chains in the Genus database with same CATH topology
5BQ8B 3QTKA 1NYUB 1REUA 3BMPA 1VPPV 2H64A 5AEJA 1WAQA 1WWWV 1XWDB 3IJ2A 3BDYV 4MPLA 1KTZA 2QJ9A 2QR0C 3JVFA 4QHUC 1TGKA 5BQCA 4WPBA 4LXRJ 4XPJA 3S1BV 4YCIC 1TZIV 4UI2B 1S4YB 1VPFA 2B0UA 3EVSB 4LXSJ 1HCNA 4MQWB 1KLCA 2QCQA 4UI0A 3FUBB 1QTYR 2ASKA 1JPYA 2VXSA 1MJVA 1QFWA 2V5EB 2C7WA 5F3HI 5HI5A 2GOOA 2X1WA 5E4GA 1FZVA 1KLAA 5BQEB 1REWA 1HRPA 1B98A 5FV1V 2XV7A 2R53A 5HK5A 3V2AA 1BJ1V 5BQ8D 2ARPA 1WQ8A 2VPFA 1RV6V 1FL7A 5HHXA 3S1KV 4UHZA 4EDWV 1E9JA 1WQ9A 5BPUA 5JZ7A 4HQUA 2GYRA 4HR9A 2ARVA 4KV5A 1BNDB 5HI3A 5HHDA 2H62A 2KD3A 3BK3A 2TGIA 4GLSE 4KXZA 1LXIA 4AY9A 1HD4A 5HK5E 1CZ8V 3MJGA 1PDGA 1B8MA 4EC7A 2QJAA 3MJKA 4QCIC 4HQXA 3KFDA 4EFVA 4UI1A 3SEKB 1BTGA 2GNNA 5HHVA 1SG1A 5HHCA 5BQ8A 2QJBA 1BETA 5BQBA 2GYZA 4EAXA 1TZHV 1ZKZA 1XWDA 1QFWB 5HI4A 2FJHV 4N1DA 1DZ7A 2QCWA 3B4VA 1KATW 1HRPB 4ZBNA 1BMPA 4YCGC 2VWEA 2FJGV 1AOCA 2PJYA 2X1XE 1NT3A 4KZNA 3HH2A 4MIDA 4EDXV 4MQWA 2R52A 2P6AA 2BHKA 3V6BA 1FL7B 1WQ9B 1M4UL 4GLNE 1MKGA 4FAOA 1M4UA 2XACA 5BQEA 2IFGE 1FLTV 4UHYA 1HCNB 1B8KA 5F3BC 1TGJA 1ES7A 3QB4A 4ZFFC 3EO1C 4BV4L 4AY9B 1SGFB 4HSAA 2GH0C 3RJRA 5FV2V 3P9WA 1B8MB 4X1JA 1HCFA 1NYSB 1BNDA 4QAFC 1MKKA 1LX5A 3E07A 3BUKA 1AGQA 1TFGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BQ8 B;  3QTK A;  1NYU B;  1REU A;  3BMP A;  1VPP V;  2H64 A;  5AEJ A;  1WAQ A;  1WWW V;  1XWD B;  3IJ2 A;  3BDY V;  4MPL A;  1KTZ A;  2QJ9 A;  2QR0 C;  3JVF A;  4QHU C;  1TGK A;  5BQC A;  4WPB A;  4LXR J;  4XPJ A;  3S1B V;  4YCI C;  1TZI V;  4UI2 B;  1S4Y B;  1VPF A;  2B0U A;  3EVS B;  4LXS J;  1HCN A;  4MQW B;  1KLC A;  2QCQ A;  4UI0 A;  3FUB B;  1QTY R;  2ASK A;  1JPY A;  2VXS A;  1MJV A;  1QFW A;  2V5E B;  2C7W A;  5F3H I;  5HI5 A;  2GOO A;  2X1W A;  5E4G A;  1FZV A;  1KLA A;  5BQE B;  1REW A;  1HRP A;  1B98 A;  5FV1 V;  2XV7 A;  2R53 A;  5HK5 A;  3V2A A;  1BJ1 V;  5BQ8 D;  2ARP A;  1WQ8 A;  2VPF A;  1RV6 V;  1FL7 A;  5HHX A;  3S1K V;  4UHZ A;  4EDW V;  1E9J A;  1WQ9 A;  5BPU A;  5JZ7 A;  4HQU A;  2GYR A;  4HR9 A;  2ARV A;  4KV5 A;  1BND B;  5HI3 A;  5HHD A;  2H62 A;  2KD3 A;  3BK3 A;  2TGI A;  4GLS E;  4KXZ A;  1LXI A;  4AY9 A;  1HD4 A;  5HK5 E;  1CZ8 V;  3MJG A;  1PDG A;  1B8M A;  4EC7 A;  2QJA A;  3MJK A;  4QCI C;  4HQX A;  3KFD A;  4EFV A;  4UI1 A;  3SEK B;  1BTG A;  2GNN A;  5HHV A;  1SG1 A;  5HHC A;  5BQ8 A;  2QJB A;  1BET A;  5BQB A;  2GYZ A;  4EAX A;  1TZH V;  1ZKZ A;  1XWD A;  1QFW B;  5HI4 A;  2FJH V;  4N1D A;  1DZ7 A;  2QCW A;  3B4V A;  1KAT W;  1HRP B;  4ZBN A;  1BMP A;  4YCG C;  2VWE A;  2FJG V;  1AOC A;  2PJY A;  2X1X E;  1NT3 A;  4KZN A;  3HH2 A;  4MID A;  4EDX V;  4MQW A;  2R52 A;  2P6A A;  2BHK A;  3V6B A;  1FL7 B;  1WQ9 B;  1M4U L;  4GLN E;  1MKG A;  4FAO A;  1M4U A;  2XAC A;  5BQE A;  2IFG E;  1FLT V;  4UHY A;  1HCN B;  1B8K A;  5F3B C;  1TGJ A;  1ES7 A;  3QB4 A;  4ZFF C;  3EO1 C;  4BV4 L;  4AY9 B;  1SGF B;  4HSA A;  2GH0 C;  3RJR A;  5FV2 V;  3P9W A;  1B8M B;  4X1J A;  1HCF A;  1NYS B;  1BND A;  4QAF C;  1MKK A;  1LX5 A;  3E07 A;  3BUK A;  1AGQ A;  1TFG A; 
#chains in the Genus database with same CATH topology
 5BQ8 B;  3QTK A;  1NYU B;  1REU A;  3BMP A;  1VPP V;  2H64 A;  5AEJ A;  1WAQ A;  1WWW V;  1XWD B;  3IJ2 A;  3BDY V;  4MPL A;  1KTZ A;  2QJ9 A;  2QR0 C;  3JVF A;  4QHU C;  1TGK A;  5BQC A;  4WPB A;  4LXR J;  4XPJ A;  3S1B V;  4YCI C;  1TZI V;  4UI2 B;  1S4Y B;  1VPF A;  2B0U A;  3EVS B;  4LXS J;  1HCN A;  4MQW B;  1KLC A;  2QCQ A;  4UI0 A;  3FUB B;  1QTY R;  2ASK A;  1JPY A;  2VXS A;  1MJV A;  1QFW A;  2V5E B;  2C7W A;  5F3H I;  5HI5 A;  2GOO A;  2X1W A;  5E4G A;  1FZV A;  1KLA A;  5BQE B;  1REW A;  1HRP A;  1B98 A;  5FV1 V;  2XV7 A;  2R53 A;  5HK5 A;  3V2A A;  1BJ1 V;  5BQ8 D;  2ARP A;  1WQ8 A;  2VPF A;  1RV6 V;  1FL7 A;  5HHX A;  3S1K V;  4UHZ A;  4EDW V;  1E9J A;  1WQ9 A;  5BPU A;  5JZ7 A;  4HQU A;  2GYR A;  4HR9 A;  2ARV A;  4KV5 A;  1BND B;  5HI3 A;  5HHD A;  2H62 A;  2KD3 A;  3BK3 A;  2TGI A;  4GLS E;  4KXZ A;  1LXI A;  4AY9 A;  1HD4 A;  5HK5 E;  1CZ8 V;  3MJG A;  1PDG A;  1B8M A;  4EC7 A;  2QJA A;  3MJK A;  4QCI C;  4HQX A;  3KFD A;  4EFV A;  4UI1 A;  3SEK B;  1BTG A;  2GNN A;  5HHV A;  1SG1 A;  5HHC A;  5BQ8 A;  2QJB A;  1BET A;  5BQB A;  2GYZ A;  4EAX A;  1TZH V;  1ZKZ A;  1XWD A;  1QFW B;  5HI4 A;  2FJH V;  4N1D A;  1DZ7 A;  2QCW A;  3B4V A;  1KAT W;  1HRP B;  4ZBN A;  1BMP A;  4YCG C;  2VWE A;  2FJG V;  1AOC A;  2PJY A;  2X1X E;  1NT3 A;  4KZN A;  3HH2 A;  4MID A;  4EDX V;  4MQW A;  2R52 A;  2P6A A;  2BHK A;  3V6B A;  1FL7 B;  1WQ9 B;  1M4U L;  4GLN E;  1MKG A;  4FAO A;  1M4U A;  2XAC A;  5BQE A;  2IFG E;  1FLT V;  4UHY A;  1HCN B;  1B8K A;  5F3B C;  1TGJ A;  1ES7 A;  3QB4 A;  4ZFF C;  3EO1 C;  4BV4 L;  4AY9 B;  1SGF B;  4HSA A;  2GH0 C;  3RJR A;  5FV2 V;  3P9W A;  1B8M B;  4X1J A;  1HCF A;  1NYS B;  1BND A;  4QAF C;  1MKK A;  1LX5 A;  3E07 A;  3BUK A;  1AGQ A;  1TFG A; 
#chains in the Genus database with same CATH homology
 5BQ8 B;  3QTK A;  1NYU B;  1REU A;  3BMP A;  1VPP V;  2H64 A;  5AEJ A;  1WAQ A;  1WWW V;  1XWD B;  3IJ2 A;  3BDY V;  4MPL A;  1KTZ A;  2QJ9 A;  2QR0 C;  3JVF A;  4QHU C;  1TGK A;  5BQC A;  4WPB A;  4LXR J;  4XPJ A;  3S1B V;  4YCI C;  1TZI V;  4UI2 B;  1S4Y B;  1VPF A;  2B0U A;  3EVS B;  4LXS J;  1HCN A;  4MQW B;  1KLC A;  2QCQ A;  4UI0 A;  3FUB B;  1QTY R;  2ASK A;  1JPY A;  2VXS A;  1MJV A;  1QFW A;  2V5E B;  2C7W A;  5F3H I;  5HI5 A;  2GOO A;  2X1W A;  5E4G A;  1FZV A;  1KLA A;  5BQE B;  1REW A;  1HRP A;  1B98 A;  5FV1 V;  2XV7 A;  2R53 A;  5HK5 A;  3V2A A;  1BJ1 V;  5BQ8 D;  2ARP A;  1WQ8 A;  2VPF A;  1RV6 V;  1FL7 A;  5HHX A;  3S1K V;  4UHZ A;  4EDW V;  1E9J A;  1WQ9 A;  5BPU A;  5JZ7 A;  4HQU A;  2GYR A;  4HR9 A;  2ARV A;  4KV5 A;  1BND B;  5HI3 A;  5HHD A;  2H62 A;  2KD3 A;  3BK3 A;  2TGI A;  4GLS E;  4KXZ A;  1LXI A;  4AY9 A;  1HD4 A;  5HK5 E;  1CZ8 V;  3MJG A;  1PDG A;  1B8M A;  4EC7 A;  2QJA A;  3MJK A;  4QCI C;  4HQX A;  3KFD A;  4EFV A;  4UI1 A;  3SEK B;  1BTG A;  2GNN A;  5HHV A;  1SG1 A;  5HHC A;  5BQ8 A;  2QJB A;  1BET A;  5BQB A;  2GYZ A;  4EAX A;  1TZH V;  1ZKZ A;  1XWD A;  1QFW B;  5HI4 A;  2FJH V;  4N1D A;  1DZ7 A;  2QCW A;  3B4V A;  1KAT W;  1HRP B;  4ZBN A;  1BMP A;  4YCG C;  2VWE A;  2FJG V;  1AOC A;  2PJY A;  2X1X E;  1NT3 A;  4KZN A;  3HH2 A;  4MID A;  4EDX V;  4MQW A;  2R52 A;  2P6A A;  2BHK A;  3V6B A;  1FL7 B;  1WQ9 B;  1M4U L;  4GLN E;  1MKG A;  4FAO A;  1M4U A;  2XAC A;  5BQE A;  2IFG E;  1FLT V;  4UHY A;  1HCN B;  1B8K A;  5F3B C;  1TGJ A;  1ES7 A;  3QB4 A;  4ZFF C;  3EO1 C;  4BV4 L;  4AY9 B;  1SGF B;  4HSA A;  2GH0 C;  3RJR A;  5FV2 V;  3P9W A;  1B8M B;  4X1J A;  1HCF A;  1NYS B;  1BND A;  4QAF C;  1MKK A;  1LX5 A;  3E07 A;  3BUK A;  1AGQ A;  1TFG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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