3V4HA

Crystal structure of a type vi secretion system effector from yersinia pestis
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
152
structure length
131
Chain Sequence
DMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHKASVSDFCFAHYIDKASPNLLSYCLLGKHIKNVQFVLRKPLEYLTIKFTDVIITRVDMAGSLEDRPREEIRFSFTKMTQDYVMQNAKSGVISANYDV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords hypothetical protein
publication title Crystal structure of a type VI secretion system effector from Yersinia pestis
rcsb
source organism Yersinia pestis
total genus 25
structure length 131
sequence length 152
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05638 T6SS_HCP Type VI secretion system effector, Hcp
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.20 Mainly Beta Roll Pnp Oxidase; Chain A Hcp1-like 3v4hA00
3HE1A 4TV4A 4HKHA 1Y12A 3EAAA 4W64A 3V4HA
chains in the Genus database with same CATH superfamily
3HMZA 4Z85A 2QEAA 2ECRA 2HTDA 2NR4A 1USCA 1CI0A 1RFEA 1I0RA 2RDEA 3CB0A 2D5MA 3RH7A 3BNKA 3TGVA 1XXOA 1WLIA 3ZOGA 1AXJA 3E4VA 3BPKA 3F7EA 4HMSA 1NRGA 4L82A 2IABA 2HTIA 1G78A 4ZKYA 2ASFA 4Y9IA 3B5MA 4HMXA 2RE7A 4IRAA 4XJ2A 4XHYA 4HMWA 2I51A 3DNHA 4TV4A 5ESCA 1JNWA 3U0IA 1WLKA 3HY8A 4HMTA 2I02A 4UHVA 1RZ0A 3KYGA 3R5ZA 4HX6A 3VY5A 2VPAA 4W64A 1W3OA 2ARZA 2OL5A 4QVBA 3K86A 2FHQA 3PFTA 2L1TA 2ED4A 3VY2A 3U5WA 4HKHA 5CHOA 1G79A 5JABA 3FKHA 1W3PA 4N7RC 3DB0A 3FGEA 4HMUA 3AMFA 3U34A 1Y30A 1G76A 1W3RA 1RZ1A 2D38A 4R82A 2HQ7A 3A6QA 3KYFA 2X1JA 3K87A 5BNCA 3U35A 2ECUA 2X1KA 5CHEC 3BA3A 2IMLA 3ZOEA 2R6VA 1YLNA 1W3QA 3V4HA 2D36A 3VYAA 1VL7A 1FLMA 2R0XA 1TY9A 3H96A 1WGBA 3ZOCA 1XHNA 1G77A 2HQ9A 3R5YA 4F07A 2IG6A 3EC6A 3K88A 4MTKA 2K4QA 1W9AA 2GJGA 2P5ZX 3EAAA 3R5RA 1DNLA 1EJEA 3DMBA 3AWHA 1Y12A 2PTFA 2A2JA 4HMVA 3SWJA 2E83A 2GUJA 1USFA 1YOAA 2HHZA 3HE1A 1T9MA 3A20A 3GASA 2D37A 4YWNA 2FG9A 2QCKA 2Q9KA 3IN6A 3R5LA 1I0SA 2AQ6A 3ZOFA 3CP3A 2FURA 3A6RA 3R5WA 1WV4A 3ZODA 4YBNA 2OU5A 3NFWA 3ZOHA 3R5PA
chains in the Genus database with same CATH topology
3HE1A 4TV4A 4HKHA 1Y12A 3EAAA 4W64A 3V4HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HE1 A;  4TV4 A;  4HKH A;  1Y12 A;  3EAA A;  4W64 A;  3V4H A; 
#chains in the Genus database with same CATH topology
 3HMZ A;  4Z85 A;  2QEA A;  2ECR A;  2HTD A;  2NR4 A;  1USC A;  1CI0 A;  1RFE A;  1I0R A;  2RDE A;  3CB0 A;  2D5M A;  3RH7 A;  3BNK A;  3TGV A;  1XXO A;  1WLI A;  3ZOG A;  1AXJ A;  3E4V A;  3BPK A;  3F7E A;  4HMS A;  1NRG A;  4L82 A;  2IAB A;  2HTI A;  1G78 A;  4ZKY A;  2ASF A;  4Y9I A;  3B5M A;  4HMX A;  2RE7 A;  4IRA A;  4XJ2 A;  4XHY A;  4HMW A;  2I51 A;  3DNH A;  4TV4 A;  5ESC A;  1JNW A;  3U0I A;  1WLK A;  3HY8 A;  4HMT A;  2I02 A;  4UHV A;  1RZ0 A;  3KYG A;  3R5Z A;  4HX6 A;  3VY5 A;  2VPA A;  4W64 A;  1W3O A;  2ARZ A;  2OL5 A;  4QVB A;  3K86 A;  2FHQ A;  3PFT A;  2L1T A;  2ED4 A;  3VY2 A;  3U5W A;  4HKH A;  5CHO A;  1G79 A;  5JAB A;  3FKH A;  1W3P A;  4N7R C;  3DB0 A;  3FGE A;  4HMU A;  3AMF A;  3U34 A;  1Y30 A;  1G76 A;  1W3R A;  1RZ1 A;  2D38 A;  4R82 A;  2HQ7 A;  3A6Q A;  3KYF A;  2X1J A;  3K87 A;  5BNC A;  3U35 A;  2ECU A;  2X1K A;  5CHE C;  3BA3 A;  2IML A;  3ZOE A;  2R6V A;  1YLN A;  1W3Q A;  3V4H A;  2D36 A;  3VYA A;  1VL7 A;  1FLM A;  2R0X A;  1TY9 A;  3H96 A;  1WGB A;  3ZOC A;  1XHN A;  1G77 A;  2HQ9 A;  3R5Y A;  4F07 A;  2IG6 A;  3EC6 A;  3K88 A;  4MTK A;  2K4Q A;  1W9A A;  2GJG A;  2P5Z X;  3EAA A;  3R5R A;  1DNL A;  1EJE A;  3DMB A;  3AWH A;  1Y12 A;  2PTF A;  2A2J A;  4HMV A;  3SWJ A;  2E83 A;  2GUJ A;  1USF A;  1YOA A;  2HHZ A;  3HE1 A;  1T9M A;  3A20 A;  3GAS A;  2D37 A;  4YWN A;  2FG9 A;  2QCK A;  2Q9K A;  3IN6 A;  3R5L A;  1I0S A;  2AQ6 A;  3ZOF A;  3CP3 A;  2FUR A;  3A6R A;  3R5W A;  1WV4 A;  3ZOD A;  4YBN A;  2OU5 A;  3NFW A;  3ZOH A;  3R5P A; 
#chains in the Genus database with same CATH homology
 3HE1 A;  4TV4 A;  4HKH A;  1Y12 A;  3EAA A;  4W64 A;  3V4H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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