3VMID

Carbazole- and oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmiD00
1L0LE 3L74E 2E4PA 2NVGA 4P1CH 2BCCE 4HM4A 1UUWA 4QURA 4H13D 4H0LD 2B24A 3L73E 1G8KB 1SQVE 3GZXA 2BMQA 4EMJB 1O7GA 1SJGA 3VCPA 4PV1D 1Q90C 4AIVA 1SQPE 1ULJA 2DE6D 2XSOA 1BCCE 1UUVA 3CXHE 1EG9A 3GTEA 2NVFA 3H1LE 2FYNC 2NWFA 1RIEA 3L70E 4NBHD 3L75E 2YIUC 2B1XA 1L0NE 5AEWA 4NBED 4U3FE 4HM5A 1G8JB 4NBCD 1O7PA 2QPZA 4NBFD 4QUQA 3L72E 4H44D 5KLVE 3FOUA 4NBBD 4QDFA 1O7WA 2QJPC 4QDDA 1ULIA 2E4QA 1VM9A 4NBDD 2E74D 3D89A 2XSHA 2HMKA 2HMMA 2NUMA 5BOKA 2YVJB 1KYOE 4QCKA 4HM6A 3GTSA 1PPJE 2HMNA 1O7HA 2ZYLA 2BMRA 2JO6A 4NB9D 3GZYA 3TGUE 4QUPA 3CX5E 1VCKA 4PD4E 4NBAD 3GL2A 1JM1A 4NB8D 4AAYB 2QJKC 3DQYA 2YFIA 1RFSA 1NTME 1NU1E 3GKEA 3H1IE 2HMLA 3H1KE 2I7FA 3AZCA 3EN1A 1PP9E 1ZRTE 2IBZE 2NVEA 3H1HE 3N0QA 4HM3A 1SQQE 4P1BH 2YFJA 2BMOA 2DE7D 1NYKA 3GL0A 2XR8A 2ZT9D 2E76D 5HL4A 4NBGD 2DE5D 3L71E 1O7MA 3VMHD 4OGQD 2GBWA 1NDOA 2NUKA 3GB4A 4HM0A 2QJYC 3VCAA 5KKZC 2HMJA 4HM2A 4HM8A 3BCCE 4HKVA 3GCEA 2D2CD 4HM1A 3H1JE 2CKFA 1VF5D 2XRXA 1P84E 2GBXA 3C0DA 2HMOA 4HJLA 2JZAA 2Q3WA 5AEUA 3EQQA 1O7NA 5CXMA 4HM7A 3CWBE 1BE3E 1SQBE 2YFLA 5KLIC 1KB9E 1EZVE 1NTZE 2FYUE 3GOBA 1FQTA 4QDCA 3VMGD 3VMID 1SQXE 2E75D 1WQLA 1NTKE 4QDFB 2A06E
chains in the Genus database with same CATH superfamily
1L0LE 3L74E 2E4PA 2NVGA 4P1CH 2BCCE 4HM4A 1UUWA 4QURA 4H13D 4H0LD 2B24A 3L73E 1G8KB 1SQVE 3GZXA 2BMQA 4EMJB 1O7GA 1SJGA 3VCPA 4PV1D 1Q90C 4AIVA 1SQPE 1ULJA 2DE6D 2XSOA 1BCCE 1UUVA 3CXHE 1EG9A 3GTEA 2NVFA 3H1LE 2FYNC 2NWFA 1RIEA 3L70E 4NBHD 3L75E 2YIUC 2B1XA 1L0NE 5AEWA 4NBED 4U3FE 4HM5A 1G8JB 4NBCD 1O7PA 2QPZA 4NBFD 4QUQA 3L72E 4H44D 5KLVE 3FOUA 4NBBD 4QDFA 1O7WA 2QJPC 4QDDA 1ULIA 2E4QA 1VM9A 4NBDD 2E74D 3D89A 2XSHA 2HMKA 2HMMA 2NUMA 5BOKA 2YVJB 1KYOE 4QCKA 4HM6A 3GTSA 1PPJE 2HMNA 1O7HA 2ZYLA 2BMRA 2JO6A 4NB9D 3GZYA 3TGUE 4QUPA 3CX5E 1VCKA 4PD4E 4NBAD 3GL2A 1JM1A 4NB8D 4AAYB 2QJKC 3DQYA 2YFIA 1RFSA 1NTME 1NU1E 3GKEA 3H1IE 2HMLA 3H1KE 2I7FA 3AZCA 3EN1A 1PP9E 1ZRTE 2IBZE 2NVEA 3H1HE 3N0QA 4HM3A 1SQQE 4P1BH 2YFJA 2BMOA 2DE7D 1NYKA 3GL0A 2XR8A 2ZT9D 2E76D 5HL4A 4NBGD 2DE5D 3L71E 1O7MA 3VMHD 4OGQD 2GBWA 1NDOA 2NUKA 3GB4A 4HM0A 2QJYC 3VCAA 5KKZC 2HMJA 4HM2A 4HM8A 3BCCE 4HKVA 3GCEA 2D2CD 4HM1A 3H1JE 2CKFA 1VF5D 2XRXA 1P84E 2GBXA 3C0DA 2HMOA 4HJLA 2JZAA 2Q3WA 5AEUA 3EQQA 1O7NA 5CXMA 4HM7A 3CWBE 1BE3E 1SQBE 2YFLA 5KLIC 1KB9E 1EZVE 1NTZE 2FYUE 3GOBA 1FQTA 4QDCA 3VMGD 3VMID 1SQXE 2E75D 1WQLA 1NTKE 4QDFB 2A06E
chains in the Genus database with same CATH topology
1L0LE 3L74E 2E4PA 2NVGA 4P1CH 2BCCE 4HM4A 1UUWA 4QURA 4H13D 4H0LD 2B24A 3L73E 1G8KB 1SQVE 3GZXA 2BMQA 4EMJB 1O7GA 1SJGA 3VCPA 4PV1D 1Q90C 4AIVA 1SQPE 1ULJA 2DE6D 2XSOA 1BCCE 1UUVA 3CXHE 1EG9A 3GTEA 2NVFA 3H1LE 2FYNC 2NWFA 1RIEA 3L70E 4NBHD 3L75E 2YIUC 2B1XA 1L0NE 5AEWA 4NBED 4U3FE 4HM5A 1G8JB 4NBCD 1O7PA 2QPZA 4NBFD 4QUQA 3L72E 4H44D 5KLVE 3FOUA 4NBBD 4QDFA 1O7WA 2QJPC 4QDDA 1ULIA 2E4QA 1VM9A 4NBDD 2E74D 3D89A 2XSHA 2HMKA 2HMMA 2NUMA 5BOKA 2YVJB 1KYOE 4QCKA 4HM6A 3GTSA 1PPJE 2HMNA 1O7HA 2ZYLA 2BMRA 2JO6A 4NB9D 3GZYA 3TGUE 4QUPA 3CX5E 1VCKA 4PD4E 4NBAD 3GL2A 1JM1A 4NB8D 4AAYB 2QJKC 3DQYA 2YFIA 1RFSA 1NTME 1NU1E 3GKEA 3H1IE 2HMLA 3H1KE 2I7FA 3AZCA 3EN1A 1PP9E 1ZRTE 2IBZE 2NVEA 3H1HE 3N0QA 4HM3A 1SQQE 4P1BH 2YFJA 2BMOA 2DE7D 1NYKA 3GL0A 2XR8A 2ZT9D 2E76D 5HL4A 4NBGD 2DE5D 3L71E 1O7MA 3VMHD 4OGQD 2GBWA 1NDOA 2NUKA 3GB4A 4HM0A 2QJYC 3VCAA 5KKZC 2HMJA 4HM2A 4HM8A 3BCCE 4HKVA 3GCEA 2D2CD 4HM1A 3H1JE 2CKFA 1VF5D 2XRXA 1P84E 2GBXA 3C0DA 2HMOA 4HJLA 2JZAA 2Q3WA 5AEUA 3EQQA 1O7NA 5CXMA 4HM7A 3CWBE 1BE3E 1SQBE 2YFLA 5KLIC 1KB9E 1EZVE 1NTZE 2FYUE 3GOBA 1FQTA 4QDCA 3VMGD 3VMID 1SQXE 2E75D 1WQLA 1NTKE 4QDFB 2A06E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L0L E;  3L74 E;  2E4P A;  2NVG A;  4P1C H;  2BCC E;  4HM4 A;  1UUW A;  4QUR A;  4H13 D;  4H0L D;  2B24 A;  3L73 E;  1G8K B;  1SQV E;  3GZX A;  2BMQ A;  4EMJ B;  1O7G A;  1SJG A;  3VCP A;  4PV1 D;  1Q90 C;  4AIV A;  1SQP E;  1ULJ A;  2DE6 D;  2XSO A;  1BCC E;  1UUV A;  3CXH E;  1EG9 A;  3GTE A;  2NVF A;  3H1L E;  2FYN C;  2NWF A;  1RIE A;  3L70 E;  4NBH D;  3L75 E;  2YIU C;  2B1X A;  1L0N E;  5AEW A;  4NBE D;  4U3F E;  4HM5 A;  1G8J B;  4NBC D;  1O7P A;  2QPZ A;  4NBF D;  4QUQ A;  3L72 E;  4H44 D;  5KLV E;  3FOU A;  4NBB D;  4QDF A;  1O7W A;  2QJP C;  4QDD A;  1ULI A;  2E4Q A;  1VM9 A;  4NBD D;  2E74 D;  3D89 A;  2XSH A;  2HMK A;  2HMM A;  2NUM A;  5BOK A;  2YVJ B;  1KYO E;  4QCK A;  4HM6 A;  3GTS A;  1PPJ E;  2HMN A;  1O7H A;  2ZYL A;  2BMR A;  2JO6 A;  4NB9 D;  3GZY A;  3TGU E;  4QUP A;  3CX5 E;  1VCK A;  4PD4 E;  4NBA D;  3GL2 A;  1JM1 A;  4NB8 D;  4AAY B;  2QJK C;  3DQY A;  2YFI A;  1RFS A;  1NTM E;  1NU1 E;  3GKE A;  3H1I E;  2HML A;  3H1K E;  2I7F A;  3AZC A;  3EN1 A;  1PP9 E;  1ZRT E;  2IBZ E;  2NVE A;  3H1H E;  3N0Q A;  4HM3 A;  1SQQ E;  4P1B H;  2YFJ A;  2BMO A;  2DE7 D;  1NYK A;  3GL0 A;  2XR8 A;  2ZT9 D;  2E76 D;  5HL4 A;  4NBG D;  2DE5 D;  3L71 E;  1O7M A;  3VMH D;  4OGQ D;  2GBW A;  1NDO A;  2NUK A;  3GB4 A;  4HM0 A;  2QJY C;  3VCA A;  5KKZ C;  2HMJ A;  4HM2 A;  4HM8 A;  3BCC E;  4HKV A;  3GCE A;  2D2C D;  4HM1 A;  3H1J E;  2CKF A;  1VF5 D;  2XRX A;  1P84 E;  2GBX A;  3C0D A;  2HMO A;  4HJL A;  2JZA A;  2Q3W A;  5AEU A;  3EQQ A;  1O7N A;  5CXM A;  4HM7 A;  3CWB E;  1BE3 E;  1SQB E;  2YFL A;  5KLI C;  1KB9 E;  1EZV E;  1NTZ E;  2FYU E;  3GOB A;  1FQT A;  4QDC A;  3VMG D;  3VMI D;  1SQX E;  2E75 D;  1WQL A;  1NTK E;  4QDF B;  2A06 E; 
#chains in the Genus database with same CATH topology
 1L0L E;  3L74 E;  2E4P A;  2NVG A;  4P1C H;  2BCC E;  4HM4 A;  1UUW A;  4QUR A;  4H13 D;  4H0L D;  2B24 A;  3L73 E;  1G8K B;  1SQV E;  3GZX A;  2BMQ A;  4EMJ B;  1O7G A;  1SJG A;  3VCP A;  4PV1 D;  1Q90 C;  4AIV A;  1SQP E;  1ULJ A;  2DE6 D;  2XSO A;  1BCC E;  1UUV A;  3CXH E;  1EG9 A;  3GTE A;  2NVF A;  3H1L E;  2FYN C;  2NWF A;  1RIE A;  3L70 E;  4NBH D;  3L75 E;  2YIU C;  2B1X A;  1L0N E;  5AEW A;  4NBE D;  4U3F E;  4HM5 A;  1G8J B;  4NBC D;  1O7P A;  2QPZ A;  4NBF D;  4QUQ A;  3L72 E;  4H44 D;  5KLV E;  3FOU A;  4NBB D;  4QDF A;  1O7W A;  2QJP C;  4QDD A;  1ULI A;  2E4Q A;  1VM9 A;  4NBD D;  2E74 D;  3D89 A;  2XSH A;  2HMK A;  2HMM A;  2NUM A;  5BOK A;  2YVJ B;  1KYO E;  4QCK A;  4HM6 A;  3GTS A;  1PPJ E;  2HMN A;  1O7H A;  2ZYL A;  2BMR A;  2JO6 A;  4NB9 D;  3GZY A;  3TGU E;  4QUP A;  3CX5 E;  1VCK A;  4PD4 E;  4NBA D;  3GL2 A;  1JM1 A;  4NB8 D;  4AAY B;  2QJK C;  3DQY A;  2YFI A;  1RFS A;  1NTM E;  1NU1 E;  3GKE A;  3H1I E;  2HML A;  3H1K E;  2I7F A;  3AZC A;  3EN1 A;  1PP9 E;  1ZRT E;  2IBZ E;  2NVE A;  3H1H E;  3N0Q A;  4HM3 A;  1SQQ E;  4P1B H;  2YFJ A;  2BMO A;  2DE7 D;  1NYK A;  3GL0 A;  2XR8 A;  2ZT9 D;  2E76 D;  5HL4 A;  4NBG D;  2DE5 D;  3L71 E;  1O7M A;  3VMH D;  4OGQ D;  2GBW A;  1NDO A;  2NUK A;  3GB4 A;  4HM0 A;  2QJY C;  3VCA A;  5KKZ C;  2HMJ A;  4HM2 A;  4HM8 A;  3BCC E;  4HKV A;  3GCE A;  2D2C D;  4HM1 A;  3H1J E;  2CKF A;  1VF5 D;  2XRX A;  1P84 E;  2GBX A;  3C0D A;  2HMO A;  4HJL A;  2JZA A;  2Q3W A;  5AEU A;  3EQQ A;  1O7N A;  5CXM A;  4HM7 A;  3CWB E;  1BE3 E;  1SQB E;  2YFL A;  5KLI C;  1KB9 E;  1EZV E;  1NTZ E;  2FYU E;  3GOB A;  1FQT A;  4QDC A;  3VMG D;  3VMI D;  1SQX E;  2E75 D;  1WQL A;  1NTK E;  4QDF B;  2A06 E; 
#chains in the Genus database with same CATH homology
 1L0L E;  3L74 E;  2E4P A;  2NVG A;  4P1C H;  2BCC E;  4HM4 A;  1UUW A;  4QUR A;  4H13 D;  4H0L D;  2B24 A;  3L73 E;  1G8K B;  1SQV E;  3GZX A;  2BMQ A;  4EMJ B;  1O7G A;  1SJG A;  3VCP A;  4PV1 D;  1Q90 C;  4AIV A;  1SQP E;  1ULJ A;  2DE6 D;  2XSO A;  1BCC E;  1UUV A;  3CXH E;  1EG9 A;  3GTE A;  2NVF A;  3H1L E;  2FYN C;  2NWF A;  1RIE A;  3L70 E;  4NBH D;  3L75 E;  2YIU C;  2B1X A;  1L0N E;  5AEW A;  4NBE D;  4U3F E;  4HM5 A;  1G8J B;  4NBC D;  1O7P A;  2QPZ A;  4NBF D;  4QUQ A;  3L72 E;  4H44 D;  5KLV E;  3FOU A;  4NBB D;  4QDF A;  1O7W A;  2QJP C;  4QDD A;  1ULI A;  2E4Q A;  1VM9 A;  4NBD D;  2E74 D;  3D89 A;  2XSH A;  2HMK A;  2HMM A;  2NUM A;  5BOK A;  2YVJ B;  1KYO E;  4QCK A;  4HM6 A;  3GTS A;  1PPJ E;  2HMN A;  1O7H A;  2ZYL A;  2BMR A;  2JO6 A;  4NB9 D;  3GZY A;  3TGU E;  4QUP A;  3CX5 E;  1VCK A;  4PD4 E;  4NBA D;  3GL2 A;  1JM1 A;  4NB8 D;  4AAY B;  2QJK C;  3DQY A;  2YFI A;  1RFS A;  1NTM E;  1NU1 E;  3GKE A;  3H1I E;  2HML A;  3H1K E;  2I7F A;  3AZC A;  3EN1 A;  1PP9 E;  1ZRT E;  2IBZ E;  2NVE A;  3H1H E;  3N0Q A;  4HM3 A;  1SQQ E;  4P1B H;  2YFJ A;  2BMO A;  2DE7 D;  1NYK A;  3GL0 A;  2XR8 A;  2ZT9 D;  2E76 D;  5HL4 A;  4NBG D;  2DE5 D;  3L71 E;  1O7M A;  3VMH D;  4OGQ D;  2GBW A;  1NDO A;  2NUK A;  3GB4 A;  4HM0 A;  2QJY C;  3VCA A;  5KKZ C;  2HMJ A;  4HM2 A;  4HM8 A;  3BCC E;  4HKV A;  3GCE A;  2D2C D;  4HM1 A;  3H1J E;  2CKF A;  1VF5 D;  2XRX A;  1P84 E;  2GBX A;  3C0D A;  2HMO A;  4HJL A;  2JZA A;  2Q3W A;  5AEU A;  3EQQ A;  1O7N A;  5CXM A;  4HM7 A;  3CWB E;  1BE3 E;  1SQB E;  2YFL A;  5KLI C;  1KB9 E;  1EZV E;  1NTZ E;  2FYU E;  3GOB A;  1FQT A;  4QDC A;  3VMG D;  3VMI D;  1SQX E;  2E75 D;  1WQL A;  1NTK E;  4QDF B;  2A06 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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