3VTSA

Crystal structure of a three finger toxin from snake venom
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
61
structure length
61
Chain Sequence
LKCHNKLVPFLSKTCPEGKNLCYKMTLMKMPKIPIKRGCTDACPKSSLLVKVVCCNKDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Cytotoxin 1
publication title Identification and structural characterization of a new three-finger toxin hemachatoxin from Hemachatus haemachatus venom.
pubmed doi rcsb
total genus 9
structure length 61
sequence length 61
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3vtsA00
3NH7A 1LJZA 1FF4A 4XJJA 1TFSA 5IMTD 1YWHA 1LX5B 1FFJA 1HOYA 1KS6A 2H62D 2J8BA 4OM4A 1CRFA 1HC9A 1IDIA 1S4YA 2UX2A 2MJ0A 1IQ9A 2H64C 2MFAA 3U74U 1M9ZA 1HAJA 1CDSA 5DO6A 1MAHF 1VB0A 2LA1A 4QTIU 1CB9A 1QKEA 2CDXA 1IKCA 1CDRA 2MUPA 1L4WA 1NYUA 1FRAA 1IJCA 1F8UB 4ZQYA 4EY8B 2X8BB 1NEAA 1NTXA 1CXNA 2QJBC 2BTXA 2JQPA 2CTXA 2HLQA 1CTXA 3QB4B 1JGKA 1HAAA 1RL5A 1RGJA 3BT1U 4FAOE 2H7ZB 1LXGA 2VLWA 1NORA 2H8UA 3KFDI 2QJAC 4OM5A 1KBSA 1CHVS 1LXHA 2OFSA 4LFTA 1KU6B 2FD6U 1CCQA 1NXBA 1H0JA 1TGXA 1HC9B 3PLCA 4P7UA 3VTSA 1CODA 5DZ5A 2L03A 2MJ4A 1KBTA 4BIKB 4FAOC 1I02A 3FEVA 1CXOA 3NEQA 1BTEA 3EBXA 1ES7B 2CRSA 3U73U 3KFDE 1QM7A 2K3GA 1B41B 1G6MA 1KTZB 1QKDA 6EBXA 3BT2U 1ZADA 1MR6A 1IDLA 2H62C 3LAQU 1CDQA 4BDTB 2BHIA 1REWC 1CVOA 2L5SA 2GOOB 3NDSA 1TXAA 4IYEA 1KC4A 5DU1A 1ONJA 1ABTA 1NYSA 1FASA 1XT3A 2CRTA 1UG4A 1IDHA 1CREA 1DRSA 2LCRA 4AEAA 2HLRA 1V6PA 3ERAA 2GOOC 2ERAA 5IMYC 2NBTA 1IK8A 3HH7A 2N99A 2MJYA 1KFHA 2I9BE 1COEA 1FSCA 1LSIA 1ERAA 1PLOA 2MHYA 2PJYB 2JVEA 1KBAA 2QC1A 2H5FA 1KXIA 2ABXA 1NTNA 1W6BA 1IDGA 1KL8A 4HQPF 1F94A 1FSSB 4DO8A 1JE9A 4RUDA 2CCXA 1CDTA 5EBXA 1BXPA 2UWRA 2PJYC 2H7ZA 3EVSC 4UY2C 1JBDA 1TXBA 1ERGA 2MUOA 2H64B 2QJ9C
chains in the Genus database with same CATH superfamily
3NH7A 1LJZA 1FF4A 4XJJA 1TFSA 5IMTD 1YWHA 1LX5B 1FFJA 1HOYA 1KS6A 2H62D 2J8BA 4OM4A 1CRFA 1HC9A 1IDIA 1S4YA 2UX2A 2MJ0A 1IQ9A 2H64C 2MFAA 3U74U 1M9ZA 1HAJA 1CDSA 5DO6A 1MAHF 1VB0A 2LA1A 4QTIU 1CB9A 1QKEA 2CDXA 1IKCA 1CDRA 2MUPA 1L4WA 1NYUA 1FRAA 1IJCA 1F8UB 4ZQYA 4EY8B 2X8BB 1NEAA 1NTXA 1CXNA 2QJBC 2BTXA 2JQPA 2CTXA 2HLQA 1CTXA 3QB4B 1JGKA 1HAAA 1RL5A 4KSNA 1RGJA 3BT1U 4FAOE 2H7ZB 1LXGA 2VLWA 1NORA 2H8UA 3KFDI 2QJAC 4OM5A 1KBSA 1CHVS 1LXHA 2OFSA 4LFTA 1KU6B 2FD6U 1CCQA 1NXBA 1H0JA 1TGXA 1HC9B 3PLCA 4P7UA 3VTSA 1CODA 5DZ5A 2L03A 2MJ4A 1KBTA 4BIKB 4FAOC 1I02A 3FEVA 1CXOA 3NEQA 1BTEA 3EBXA 1ES7B 2CRSA 3U73U 3KFDE 1QM7A 2K3GA 1B41B 1G6MA 1KTZB 1QKDA 6EBXA 3BT2U 1ZADA 1MR6A 1IDLA 2H62C 3LAQU 1CDQA 4BDTB 2BHIA 1REWC 1CVOA 2L5SA 2GOOB 3NDSA 1TXAA 4IYEA 1KC4A 5DU1A 1ONJA 1ABTA 1NYSA 1FASA 1XT3A 2CRTA 1UG4A 1IDHA 1CREA 1DRSA 2LCRA 4AEAA 2HLRA 1V6PA 3ERAA 2GOOC 2ERAA 5IMYC 2NBTA 1IK8A 3HH7A 2N99A 2MJYA 1KFHA 2I9BE 1COEA 1FSCA 1LSIA 1ERAA 1PLOA 2MHYA 2PJYB 2JVEA 1KBAA 2QC1A 2H5FA 1KXIA 2ABXA 1NTNA 1W6BA 1IDGA 1KL8A 4HQPF 1F94A 1FSSB 4DO8A 1JE9A 4RUDA 2CCXA 1CDTA 5EBXA 1BXPA 2UWRA 2PJYC 2H7ZA 3EVSC 4UY2C 1JBDA 1TXBA 1ERGA 2MUOA 2H64B 2QJ9C
chains in the Genus database with same CATH topology
3NH7A 1LJZA 1FF4A 4XJJA 1TFSA 5IMTD 1YWHA 1LX5B 1FFJA 1HOYA 1KS6A 2H62D 2J8BA 4OM4A 1CRFA 1HC9A 1IDIA 1S4YA 2UX2A 2MJ0A 1IQ9A 2H64C 2MFAA 3U74U 1M9ZA 1HAJA 1CDSA 5DO6A 1MAHF 1VB0A 2LA1A 4QTIU 1CB9A 1QKEA 2CDXA 1IKCA 1CDRA 2MUPA 1L4WA 1NYUA 1FRAA 1IJCA 1F8UB 4ZQYA 4EY8B 2X8BB 1NEAA 1NTXA 1CXNA 2QJBC 2BTXA 2JQPA 2CTXA 2HLQA 1CTXA 3QB4B 1JGKA 1HAAA 1RL5A 4KSNA 1RGJA 3BT1U 4FAOE 2H7ZB 1LXGA 2VLWA 1NORA 2H8UA 3KFDI 2QJAC 4OM5A 1KBSA 1CHVS 1LXHA 2OFSA 4LFTA 1KU6B 2FD6U 1CCQA 1NXBA 1H0JA 1TGXA 1HC9B 3PLCA 4P7UA 3VTSA 1CODA 5DZ5A 2L03A 2MJ4A 1KBTA 4BIKB 4FAOC 1I02A 3FEVA 1CXOA 3NEQA 1BTEA 3EBXA 1ES7B 2CRSA 3U73U 3KFDE 1QM7A 2K3GA 1B41B 1G6MA 1KTZB 1QKDA 6EBXA 3BT2U 1ZADA 1MR6A 1IDLA 2H62C 3LAQU 1CDQA 4BDTB 2BHIA 1REWC 1CVOA 2L5SA 2GOOB 3NDSA 1TXAA 4IYEA 1KC4A 5DU1A 1ONJA 1ABTA 1NYSA 1FASA 1XT3A 2CRTA 1UG4A 1IDHA 1CREA 1DRSA 2LCRA 4AEAA 2HLRA 1V6PA 3ERAA 2GOOC 2ERAA 5IMYC 2NBTA 1IK8A 3HH7A 2N99A 2MJYA 1KFHA 2I9BE 1COEA 1FSCA 1LSIA 1ERAA 1PLOA 2MHYA 2PJYB 2JVEA 1KBAA 2QC1A 2H5FA 1KXIA 2ABXA 1NTNA 1W6BA 1IDGA 1KL8A 4HQPF 1F94A 1FSSB 4DO8A 1JE9A 4RUDA 2CCXA 1CDTA 5EBXA 1BXPA 2UWRA 2PJYC 2H7ZA 3EVSC 4UY2C 1JBDA 1TXBA 1ERGA 2MUOA 2H64B 2QJ9C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NH7 A;  1LJZ A;  1FF4 A;  4XJJ A;  1TFS A;  5IMT D;  1YWH A;  1LX5 B;  1FFJ A;  1HOY A;  1KS6 A;  2H62 D;  2J8B A;  4OM4 A;  1CRF A;  1HC9 A;  1IDI A;  1S4Y A;  2UX2 A;  2MJ0 A;  1IQ9 A;  2H64 C;  2MFA A;  3U74 U;  1M9Z A;  1HAJ A;  1CDS A;  5DO6 A;  1MAH F;  1VB0 A;  2LA1 A;  4QTI U;  1CB9 A;  1QKE A;  2CDX A;  1IKC A;  1CDR A;  2MUP A;  1L4W A;  1NYU A;  1FRA A;  1IJC A;  1F8U B;  4ZQY A;  4EY8 B;  2X8B B;  1NEA A;  1NTX A;  1CXN A;  2QJB C;  2BTX A;  2JQP A;  2CTX A;  2HLQ A;  1CTX A;  3QB4 B;  1JGK A;  1HAA A;  1RL5 A;  1RGJ A;  3BT1 U;  4FAO E;  2H7Z B;  1LXG A;  2VLW A;  1NOR A;  2H8U A;  3KFD I;  2QJA C;  4OM5 A;  1KBS A;  1CHV S;  1LXH A;  2OFS A;  4LFT A;  1KU6 B;  2FD6 U;  1CCQ A;  1NXB A;  1H0J A;  1TGX A;  1HC9 B;  3PLC A;  4P7U A;  3VTS A;  1COD A;  5DZ5 A;  2L03 A;  2MJ4 A;  1KBT A;  4BIK B;  4FAO C;  1I02 A;  3FEV A;  1CXO A;  3NEQ A;  1BTE A;  3EBX A;  1ES7 B;  2CRS A;  3U73 U;  3KFD E;  1QM7 A;  2K3G A;  1B41 B;  1G6M A;  1KTZ B;  1QKD A;  6EBX A;  3BT2 U;  1ZAD A;  1MR6 A;  1IDL A;  2H62 C;  3LAQ U;  1CDQ A;  4BDT B;  2BHI A;  1REW C;  1CVO A;  2L5S A;  2GOO B;  3NDS A;  1TXA A;  4IYE A;  1KC4 A;  5DU1 A;  1ONJ A;  1ABT A;  1NYS A;  1FAS A;  1XT3 A;  2CRT A;  1UG4 A;  1IDH A;  1CRE A;  1DRS A;  2LCR A;  4AEA A;  2HLR A;  1V6P A;  3ERA A;  2GOO C;  2ERA A;  5IMY C;  2NBT A;  1IK8 A;  3HH7 A;  2N99 A;  2MJY A;  1KFH A;  2I9B E;  1COE A;  1FSC A;  1LSI A;  1ERA A;  1PLO A;  2MHY A;  2PJY B;  2JVE A;  1KBA A;  2QC1 A;  2H5F A;  1KXI A;  2ABX A;  1NTN A;  1W6B A;  1IDG A;  1KL8 A;  4HQP F;  1F94 A;  1FSS B;  4DO8 A;  1JE9 A;  4RUD A;  2CCX A;  1CDT A;  5EBX A;  1BXP A;  2UWR A;  2PJY C;  2H7Z A;  3EVS C;  4UY2 C;  1JBD A;  1TXB A;  1ERG A;  2MUO A;  2H64 B;  2QJ9 C; 
#chains in the Genus database with same CATH topology
 3NH7 A;  1LJZ A;  1FF4 A;  4XJJ A;  1TFS A;  5IMT D;  1YWH A;  1LX5 B;  1FFJ A;  1HOY A;  1KS6 A;  2H62 D;  2J8B A;  4OM4 A;  1CRF A;  1HC9 A;  1IDI A;  1S4Y A;  2UX2 A;  2MJ0 A;  1IQ9 A;  2H64 C;  2MFA A;  3U74 U;  1M9Z A;  1HAJ A;  1CDS A;  5DO6 A;  1MAH F;  1VB0 A;  2LA1 A;  4QTI U;  1CB9 A;  1QKE A;  2CDX A;  1IKC A;  1CDR A;  2MUP A;  1L4W A;  1NYU A;  1FRA A;  1IJC A;  1F8U B;  4ZQY A;  4EY8 B;  2X8B B;  1NEA A;  1NTX A;  1CXN A;  2QJB C;  2BTX A;  2JQP A;  2CTX A;  2HLQ A;  1CTX A;  3QB4 B;  1JGK A;  1HAA A;  1RL5 A;  4KSN A;  1RGJ A;  3BT1 U;  4FAO E;  2H7Z B;  1LXG A;  2VLW A;  1NOR A;  2H8U A;  3KFD I;  2QJA C;  4OM5 A;  1KBS A;  1CHV S;  1LXH A;  2OFS A;  4LFT A;  1KU6 B;  2FD6 U;  1CCQ A;  1NXB A;  1H0J A;  1TGX A;  1HC9 B;  3PLC A;  4P7U A;  3VTS A;  1COD A;  5DZ5 A;  2L03 A;  2MJ4 A;  1KBT A;  4BIK B;  4FAO C;  1I02 A;  3FEV A;  1CXO A;  3NEQ A;  1BTE A;  3EBX A;  1ES7 B;  2CRS A;  3U73 U;  3KFD E;  1QM7 A;  2K3G A;  1B41 B;  1G6M A;  1KTZ B;  1QKD A;  6EBX A;  3BT2 U;  1ZAD A;  1MR6 A;  1IDL A;  2H62 C;  3LAQ U;  1CDQ A;  4BDT B;  2BHI A;  1REW C;  1CVO A;  2L5S A;  2GOO B;  3NDS A;  1TXA A;  4IYE A;  1KC4 A;  5DU1 A;  1ONJ A;  1ABT A;  1NYS A;  1FAS A;  1XT3 A;  2CRT A;  1UG4 A;  1IDH A;  1CRE A;  1DRS A;  2LCR A;  4AEA A;  2HLR A;  1V6P A;  3ERA A;  2GOO C;  2ERA A;  5IMY C;  2NBT A;  1IK8 A;  3HH7 A;  2N99 A;  2MJY A;  1KFH A;  2I9B E;  1COE A;  1FSC A;  1LSI A;  1ERA A;  1PLO A;  2MHY A;  2PJY B;  2JVE A;  1KBA A;  2QC1 A;  2H5F A;  1KXI A;  2ABX A;  1NTN A;  1W6B A;  1IDG A;  1KL8 A;  4HQP F;  1F94 A;  1FSS B;  4DO8 A;  1JE9 A;  4RUD A;  2CCX A;  1CDT A;  5EBX A;  1BXP A;  2UWR A;  2PJY C;  2H7Z A;  3EVS C;  4UY2 C;  1JBD A;  1TXB A;  1ERG A;  2MUO A;  2H64 B;  2QJ9 C; 
#chains in the Genus database with same CATH homology
 3NH7 A;  1LJZ A;  1FF4 A;  4XJJ A;  1TFS A;  5IMT D;  1YWH A;  1LX5 B;  1FFJ A;  1HOY A;  1KS6 A;  2H62 D;  2J8B A;  4OM4 A;  1CRF A;  1HC9 A;  1IDI A;  1S4Y A;  2UX2 A;  2MJ0 A;  1IQ9 A;  2H64 C;  2MFA A;  3U74 U;  1M9Z A;  1HAJ A;  1CDS A;  5DO6 A;  1MAH F;  1VB0 A;  2LA1 A;  4QTI U;  1CB9 A;  1QKE A;  2CDX A;  1IKC A;  1CDR A;  2MUP A;  1L4W A;  1NYU A;  1FRA A;  1IJC A;  1F8U B;  4ZQY A;  4EY8 B;  2X8B B;  1NEA A;  1NTX A;  1CXN A;  2QJB C;  2BTX A;  2JQP A;  2CTX A;  2HLQ A;  1CTX A;  3QB4 B;  1JGK A;  1HAA A;  1RL5 A;  4KSN A;  1RGJ A;  3BT1 U;  4FAO E;  2H7Z B;  1LXG A;  2VLW A;  1NOR A;  2H8U A;  3KFD I;  2QJA C;  4OM5 A;  1KBS A;  1CHV S;  1LXH A;  2OFS A;  4LFT A;  1KU6 B;  2FD6 U;  1CCQ A;  1NXB A;  1H0J A;  1TGX A;  1HC9 B;  3PLC A;  4P7U A;  3VTS A;  1COD A;  5DZ5 A;  2L03 A;  2MJ4 A;  1KBT A;  4BIK B;  4FAO C;  1I02 A;  3FEV A;  1CXO A;  3NEQ A;  1BTE A;  3EBX A;  1ES7 B;  2CRS A;  3U73 U;  3KFD E;  1QM7 A;  2K3G A;  1B41 B;  1G6M A;  1KTZ B;  1QKD A;  6EBX A;  3BT2 U;  1ZAD A;  1MR6 A;  1IDL A;  2H62 C;  3LAQ U;  1CDQ A;  4BDT B;  2BHI A;  1REW C;  1CVO A;  2L5S A;  2GOO B;  3NDS A;  1TXA A;  4IYE A;  1KC4 A;  5DU1 A;  1ONJ A;  1ABT A;  1NYS A;  1FAS A;  1XT3 A;  2CRT A;  1UG4 A;  1IDH A;  1CRE A;  1DRS A;  2LCR A;  4AEA A;  2HLR A;  1V6P A;  3ERA A;  2GOO C;  2ERA A;  5IMY C;  2NBT A;  1IK8 A;  3HH7 A;  2N99 A;  2MJY A;  1KFH A;  2I9B E;  1COE A;  1FSC A;  1LSI A;  1ERA A;  1PLO A;  2MHY A;  2PJY B;  2JVE A;  1KBA A;  2QC1 A;  2H5F A;  1KXI A;  2ABX A;  1NTN A;  1W6B A;  1IDG A;  1KL8 A;  4HQP F;  1F94 A;  1FSS B;  4DO8 A;  1JE9 A;  4RUD A;  2CCX A;  1CDT A;  5EBX A;  1BXP A;  2UWR A;  2PJY C;  2H7Z A;  3EVS C;  4UY2 C;  1JBD A;  1TXB A;  1ERG A;  2MUO A;  2H64 B;  2QJ9 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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