3VY7A

Crystal structure of human pancreatic secretory protein zg16p with o-(alpha-d-mannosyl)-l-serine
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
138
structure length
138
Chain Sequence
RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Zymogen granule membrane protein 16
publication title Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
pubmed doi rcsb
source organism Homo sapiens
total genus 31
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3vy7A00
1PXDA 3LM1A 1TOQA 3VZFA 1UGYC 4AKDA 1KUJA 3LLYA 2NUOA 3P8SA 1WS4A 1C3MA 4AKCA 1KU8A 4WOGA 4R6RA 1JOTA 5EXGA 4PIKA 1ZGSA 1ZGRA 3VY6A 3MITA 5J4TA 3O44A 2GUCA 1XEZA 1UGWA 1C3NA 3MIUA 4PITA 2NU5A 4AK4A 1UGYA 3AQGA 3WOCA 2BMYA 1WS5C 3LL1A 1UH0A 1UGXA 1UH1A 4PIUA 2GUEA 1XXRA 1J4TA 3R51A 3MIVA 2BN0A 1M26A 5J4XA 4R6NA 1J4SA 3VY7A 2GUXA 4R6PA 3R50A 3LKYA 1VBOA 4PIFA 3VZEA 1C3KA 3LL2A 2JZ4A 4MQ0A 3LLZA 1X1VA 2GTYA 1XXQA 1OUWA 3R52A 1WS5A 5AV7A 3VZGA 4DDNA 5JM1A 1J4UA 4AKBA 2HYRA 1WS4C 1JACA 3APAA 3WOBA 5J51A 5J50A 1VBPA 2HYQA 1TP8A 1UGWC 2BMZA 4R6QA 4GX7A 3LL0A 5BN6E 2GUDA 4R6OA
chains in the Genus database with same CATH superfamily
1CIYA 1PXDA 3LM1A 1TOQA 3VZFA 1UGYC 4AKDA 1KUJA 3LLYA 2NUOA 3P8SA 1WS4A 1C3MA 4AKCA 1KU8A 4WOGA 4R6RA 1JOTA 5EXGA 4PIKA 1ZGSA 1ZGRA 3VY6A 3MITA 5J4TA 3O44A 2GUCA 4ARYA 1XEZA 1UGWA 1C3NA 3TOWA 3MIUA 4PITA 2NU5A 1I5PA 4AK4A 1VMOA 1UGYA 3AQGA 3WOCA 2BMYA 1WS5C 3LL1A 1UH0A 1UGXA 1UH1A 4PIUA 2GUEA 1XXRA 1J4TA 4QX0A 3R51A 3MIVA 2BN0A 1M26A 5J4XA 4R6NA 1J4SA 4D8MA 3VY7A 1JI6A 2GUXA 4W8JA 4R6PA 3R50A 3LKYA 1VBOA 4PIFA 3VZEA 1C3KA 3LL2A 2JZ4A 4MQ0A 3LLZA 3EB7A 1X1VA 2GTYA 1XXQA 1OUWA 3R52A 4QX1A 4QX3A 1WS5A 5AV7A 3VZGA 4DDNA 5JM1A 1J4UA 4ARXA 4AKBA 2HYRA 1WS4C 1W99A 1JACA 3APAA 3WOBA 5J51A 5J50A 4MOAA 2C9KA 2QP2A 1VBPA 1DLCA 2HYQA 1TP8A 4QX2A 1UGWC 2BMZA 4R6QA 4GX7A 3LL0A 5BN6E 2GUDA 4R6OA
chains in the Genus database with same CATH topology
1PXDA 3LM1A 1TOQA 3VZFA 1UGYC 4AKDA 1KUJA 3LLYA 2NUOA 3P8SA 1WS4A 1C3MA 4AKCA 1KU8A 4WOGA 4R6RA 1JOTA 5EXGA 4PIKA 1ZGSA 1ZGRA 3VY6A 3MITA 5J4TA 3O44A 2GUCA 1XEZA 1UGWA 1C3NA 3MIUA 4PITA 2NU5A 4AK4A 1UGYA 3AQGA 3WOCA 2BMYA 1WS5C 3LL1A 1UH0A 1UGXA 1UH1A 4PIUA 2GUEA 1XXRA 1J4TA 3R51A 3MIVA 2BN0A 1M26A 5J4XA 4R6NA 1J4SA 3VY7A 2GUXA 4R6PA 3R50A 3LKYA 1VBOA 4PIFA 3VZEA 1C3KA 3LL2A 2JZ4A 4MQ0A 3LLZA 1X1VA 2GTYA 1XXQA 1OUWA 3R52A 1WS5A 5AV7A 3VZGA 4DDNA 5JM1A 1J4UA 4AKBA 2HYRA 1WS4C 1JACA 3APAA 3WOBA 5J51A 5J50A 1VBPA 2HYQA 1TP8A 1UGWC 2BMZA 4R6QA 4GX7A 3LL0A 5BN6E 2GUDA 4R6OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PXD A;  3LM1 A;  1TOQ A;  3VZF A;  1UGY C;  4AKD A;  1KUJ A;  3LLY A;  2NUO A;  3P8S A;  1WS4 A;  1C3M A;  4AKC A;  1KU8 A;  4WOG A;  4R6R A;  1JOT A;  5EXG A;  4PIK A;  1ZGS A;  1ZGR A;  3VY6 A;  3MIT A;  5J4T A;  3O44 A;  2GUC A;  1XEZ A;  1UGW A;  1C3N A;  3MIU A;  4PIT A;  2NU5 A;  4AK4 A;  1UGY A;  3AQG A;  3WOC A;  2BMY A;  1WS5 C;  3LL1 A;  1UH0 A;  1UGX A;  1UH1 A;  4PIU A;  2GUE A;  1XXR A;  1J4T A;  3R51 A;  3MIV A;  2BN0 A;  1M26 A;  5J4X A;  4R6N A;  1J4S A;  3VY7 A;  2GUX A;  4R6P A;  3R50 A;  3LKY A;  1VBO A;  4PIF A;  3VZE A;  1C3K A;  3LL2 A;  2JZ4 A;  4MQ0 A;  3LLZ A;  1X1V A;  2GTY A;  1XXQ A;  1OUW A;  3R52 A;  1WS5 A;  5AV7 A;  3VZG A;  4DDN A;  5JM1 A;  1J4U A;  4AKB A;  2HYR A;  1WS4 C;  1JAC A;  3APA A;  3WOB A;  5J51 A;  5J50 A;  1VBP A;  2HYQ A;  1TP8 A;  1UGW C;  2BMZ A;  4R6Q A;  4GX7 A;  3LL0 A;  5BN6 E;  2GUD A;  4R6O A; 
#chains in the Genus database with same CATH topology
 1CIY A;  1PXD A;  3LM1 A;  1TOQ A;  3VZF A;  1UGY C;  4AKD A;  1KUJ A;  3LLY A;  2NUO A;  3P8S A;  1WS4 A;  1C3M A;  4AKC A;  1KU8 A;  4WOG A;  4R6R A;  1JOT A;  5EXG A;  4PIK A;  1ZGS A;  1ZGR A;  3VY6 A;  3MIT A;  5J4T A;  3O44 A;  2GUC A;  4ARY A;  1XEZ A;  1UGW A;  1C3N A;  3TOW A;  3MIU A;  4PIT A;  2NU5 A;  1I5P A;  4AK4 A;  1VMO A;  1UGY A;  3AQG A;  3WOC A;  2BMY A;  1WS5 C;  3LL1 A;  1UH0 A;  1UGX A;  1UH1 A;  4PIU A;  2GUE A;  1XXR A;  1J4T A;  4QX0 A;  3R51 A;  3MIV A;  2BN0 A;  1M26 A;  5J4X A;  4R6N A;  1J4S A;  4D8M A;  3VY7 A;  1JI6 A;  2GUX A;  4W8J A;  4R6P A;  3R50 A;  3LKY A;  1VBO A;  4PIF A;  3VZE A;  1C3K A;  3LL2 A;  2JZ4 A;  4MQ0 A;  3LLZ A;  3EB7 A;  1X1V A;  2GTY A;  1XXQ A;  1OUW A;  3R52 A;  4QX1 A;  4QX3 A;  1WS5 A;  5AV7 A;  3VZG A;  4DDN A;  5JM1 A;  1J4U A;  4ARX A;  4AKB A;  2HYR A;  1WS4 C;  1W99 A;  1JAC A;  3APA A;  3WOB A;  5J51 A;  5J50 A;  4MOA A;  2C9K A;  2QP2 A;  1VBP A;  1DLC A;  2HYQ A;  1TP8 A;  4QX2 A;  1UGW C;  2BMZ A;  4R6Q A;  4GX7 A;  3LL0 A;  5BN6 E;  2GUD A;  4R6O A; 
#chains in the Genus database with same CATH homology
 1PXD A;  3LM1 A;  1TOQ A;  3VZF A;  1UGY C;  4AKD A;  1KUJ A;  3LLY A;  2NUO A;  3P8S A;  1WS4 A;  1C3M A;  4AKC A;  1KU8 A;  4WOG A;  4R6R A;  1JOT A;  5EXG A;  4PIK A;  1ZGS A;  1ZGR A;  3VY6 A;  3MIT A;  5J4T A;  3O44 A;  2GUC A;  1XEZ A;  1UGW A;  1C3N A;  3MIU A;  4PIT A;  2NU5 A;  4AK4 A;  1UGY A;  3AQG A;  3WOC A;  2BMY A;  1WS5 C;  3LL1 A;  1UH0 A;  1UGX A;  1UH1 A;  4PIU A;  2GUE A;  1XXR A;  1J4T A;  3R51 A;  3MIV A;  2BN0 A;  1M26 A;  5J4X A;  4R6N A;  1J4S A;  3VY7 A;  2GUX A;  4R6P A;  3R50 A;  3LKY A;  1VBO A;  4PIF A;  3VZE A;  1C3K A;  3LL2 A;  2JZ4 A;  4MQ0 A;  3LLZ A;  1X1V A;  2GTY A;  1XXQ A;  1OUW A;  3R52 A;  1WS5 A;  5AV7 A;  3VZG A;  4DDN A;  5JM1 A;  1J4U A;  4AKB A;  2HYR A;  1WS4 C;  1JAC A;  3APA A;  3WOB A;  5J51 A;  5J50 A;  1VBP A;  2HYQ A;  1TP8 A;  1UGW C;  2BMZ A;  4R6Q A;  4GX7 A;  3LL0 A;  5BN6 E;  2GUD A;  4R6O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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