3VZTX

Crystal structure of outer membrane protein porb from neisseria meningitidis
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords outer membrane protein
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 85
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vztX00
2XG6A 4FRXA 1GFMA 2Y0HA 3VZUX 3WI4A 4FSOA 4LSHA 3NSGA 1BH3A 4FMSA 4C69X 7PRNA 2K4TA 4FT6A 1PHOA 3FYXA 2XE2A 2XE3A 3VZWX 1BT9A 4RJXA 3T20A 4KRAA 1GFPA 4AUIA 3A2SX 4LSFA 3VZTX 3POXA 2FGQX 5DL8A 4FRTA 2ODJA 2Y0KA 5DL5A 4D64A 2Y2XA 4D5UA 4GCQA 3EMNX 3T0SA 2J4UP 8PRNA 5JDPA 4BUMX 4KR4A 2QTKA 1H6S1 2FGRA 2J1NA 4GCPA 5DL7A 2ZLDA 3VY9X 3HWBA 3WI5A 2Y0LA 3POUA 3SYBA 1E54A 3SY7A 2PRNA 2PORA 4RJWA 3SZDA 6PRNA 2O4VA 2XE1A 3T24A 1OSMA 2ZFGA 3UPGA 3VY8X 4JFBA 1MPFA 1HXUA 1PRNA 3PRNA 4D65A 3SZVA 3PORA 1GFNA 5DL6A 1GFOA 5FVNA 4GCSA 1HXXA 4FOZA 3HW9A 4LSEA 3SYSA 4FSPA 3O0EA 2OMFA 3UU2A 3SY9A 5PRNA 4KR8A 4LSIA 1OPFA 1GFQA 1HXTA 3JTYA 3POQA 2XE5A 3K19A
chains in the Genus database with same CATH superfamily
2XG6A 2R4OA 4FRXA 2M06A 4PJ0O 4O4UA 1GFMA 2F1VA 2Y0HA 3VZUX 3DWNA 5TISO 4PR7A 3WI4A 4AYID 4FSOA 4LSHA 1Q9GA 4AYDC 1QJPA 4GHBA 3AA7B 3NSGA 4AZLA 4AYNA 1BH3A 1IZNA 4C4VB 4FMSA 3C5OA 4C69X 4O49A 4N75A 7PRNA 4N74A 3A0HO 2WJRA 3AA0A 2K4TA 4FT6A 5G3AA 2GE4A 5B66O 1PHOA 1S5LO 3DWOX 1G90A 2R4PA 1MM5A 4PUXA 5B5EO 1T16A 2MNHA 1BXWA 1ZHZA 3FYXA 3LK2B 4FESA 4XNLA 5G38A 3AA1B 4AKRB 3BRYA 5GTHO 1MM4A 2N2LA 2XE3A 2XE2A 2ERVA 4N59A 2R4NA 3VZWX 5ADXL 2XTQA 4K3CA 1BT9A 4RJXA 5EE2A 3T20A 4F4BA 3DZMA 3HOEA 2F1CX 2JMMA 4KRAA 4B61A 1GFPA 4AUIA 3A2SX 1QJ8A 4LSFA 2KDYA 2R88A 3VZTX 4AYMC 3POXA 4IL6O 3DA3A 2FGQX 5DL8A 4FZMA 5IYUA 3AA6B 3TZGA 3BRZA 4FRTA 4JCHA 5G26A 4UB8O 2ODJA 4GF4A 3LK3B 1ZHWA 2AXTO 2JQYA 2Y0KA 1THQA 4K3BA 2KC0A 2MHLA 2X9KA 2Y2XA 5DL5A 4O3YA 4QQ1A 4D5UA 4E1SA 4GCQA 4CTDA 2KXPA 2IWWA 3EMNX 3T0SA 2J4UP 8PRNA 4RLCA 5JDPA 3AAEA 2F1TA 4BUMX 2WVPA 4KR4A 3KVDD 4FZNA 1ZHYA 2R4LA 6PRNA 3AAAA 3HOLA 3PGRA 4O3WA 3PGSA 2QTKA 1H6S1 2Y7SA 2FGRA 4FQEA 4RLBA 2J1NA 2K0LA 2WJQA 1IZNB 4GCPA 4O3ZA 5DL7A 2ZLDA 4AFKA 3VY9X 3HWBA 3WI5A 3G7GA 4G76A 2Y0LA 4E1TA 2YPVA 4FUVA 4Z3TA 3POUA 5AFUL 3AA0B 3SYBA 3V8UA 1E54A 2LFUA 3QRCA 3RBHA 5T5FA 3LK41 3SY7A 2PRNA 2PORA 4RJWA 1ORMA 3AAEB 2O4VA 3AA7A 2XMXA 2XE1A 3SZDA 3T24A 3UAQA 4AYEC 4C00A 2LHFA 1ZHTA 1OSMA 2ZFGA 2N2MA 3PGUA 5GTIO 3UPGA 3VY8X 5KAFO 2W80C 3NJTA 2YNKA 4JFBA 1MPFA 1Q9FA 3KZIO 1HXUA 3BS0A 1PRNA 3PRNA 2XTRA 3DA4A 4XNKA 4D65A 3SZVA 2KZ7A 4FZLA 3PORA 4D64A 1GFNA 5DL6A 5KAIO 5ADXK 4O3XB 3LK2A 1QJ9A 1GFOA 5FVNA 3VE1A 3AA1A 4AKRA 4GCSA 5GV0A 3PQSA 1HXXA 1P4TA 1YS5A 4FOZA 4AKMA 3PQUA 3VE2A 4U9CA 3HW9A 4LSEA 3SYSA 4FSPA 3O0EA 2OMFA 5E79O 3SY9A 3UU2A 2R89A 5AFUK 5G39A 5PRNA 4KR8A 2M07A 5H2FO 3QRAA 3GP6A 4O4XA 3JCUO 2KXPB 1T1LA 4LSIA 1OPFA 1ZHXA 2KZ7B 3A0BO 3AA6A 2X27X 3AAAB 4N58A 1GFQA 3PF1A 4C4VA 4G75A 4UB6O 3LK3A 1HXTA 4RL9A 3JTYA 2IWVA 2R8AA 2XE5A 3POQA 5D5DA 3LK42 3WU2O 3K19A 2W81C
chains in the Genus database with same CATH topology
2XG6A 4FRXA 2M06A 4O4UA 1GFMA 2F1VA 2Y0HA 3VZUX 3WI4A 4AYID 4FSOA 4LSHA 1Q9GA 4AYDC 1QJPA 4GHBA 3AA7B 3NSGA 4AZLA 4AYNA 1BH3A 1IZNA 4FMSA 3C5OA 4C69X 4O49A 7PRNA 3AA0A 2K4TA 4FT6A 2GE4A 1PHOA 1G90A 1MM5A 4PUXA 2MNHA 3LK2B 1BXWA 1ZHZA 3FYXA 4FESA 4XNLA 4AKRB 3AA1B 1MM4A 2N2LA 2XE3A 2XE2A 2ERVA 4N59A 5ADXL 3VZWX 2XTQA 1BT9A 4RJXA 5EE2A 3T20A 4F4BA 3HOEA 2JMMA 4KRAA 4B61A 1GFPA 4AUIA 3A2SX 1QJ8A 4LSFA 2KDYA 3VZTX 4AYMC 3POXA 3DA3A 2FGQX 5DL8A 4FZMA 5IYUA 3AA6B 3TZGA 4FRTA 4JCHA 5G26A 2ODJA 4GF4A 3LK3B 1ZHWA 2Y0KA 5DL5A 1THQA 4D64A 2KC0A 2MHLA 2Y2XA 4D5UA 4O3YA 4QQ1A 4E1SA 4GCQA 2KXPA 3EMNX 3T0SA 2J4UP 8PRNA 4RLCA 5JDPA 3AAEA 2F1TA 4BUMX 4KR4A 3KVDD 4FZNA 1ZHYA 3AAAA 3HOLA 4O3WA 2QTKA 1H6S1 2Y7SA 2FGRA 4RLBA 2J1NA 2K0LA 4GCPA 1IZNB 4O3ZA 5DL7A 2ZLDA 4AFKA 3VY9X 3HWBA 3WI5A 3G7GA 4G76A 2Y0LA 4E1TA 2YPVA 4FUVA 4Z3TA 3POUA 5AFUL 3AA0B 3SYBA 3V8UA 1E54A 2LFUA 3QRCA 3RBHA 5T5FA 3LK41 3SY7A 2PRNA 2PORA 4RJWA 1ORMA 3AAEB 2O4VA 3AA7A 2XMXA 2XE1A 3SZDA 3T24A 3UAQA 4AYEC 6PRNA 1ZHTA 1OSMA 2LHFA 2ZFGA 2N2MA 3UPGA 3VY8X 2W80C 2YNKA 4JFBA 1MPFA 1Q9FA 1HXUA 1PRNA 3PRNA 2XTRA 3DA4A 4XNKA 4D65A 3SZVA 2KZ7A 4FZLA 3PORA 1GFNA 5DL6A 5ADXK 4O3XB 3LK2A 1QJ9A 1GFOA 5FVNA 3VE1A 3AA1A 4AKRA 4GCSA 5GV0A 3PQSA 1HXXA 1P4TA 1YS5A 4FOZA 4AKMA 3PQUA 3VE2A 4U9CA 3HW9A 4LSEA 3SYSA 4FSPA 3O0EA 2OMFA 3UU2A 3SY9A 5AFUK 5PRNA 4KR8A 2M07A 3QRAA 3GP6A 4O4XA 2KXPB 4LSIA 1OPFA 1ZHXA 2KZ7B 3AA6A 2X27X 3AAAB 4N58A 1GFQA 4G75A 3LK3A 1HXTA 4RL9A 3JTYA 3POQA 5D5DA 2XE5A 3LK42 3K19A 2W81C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XG6 A;  4FRX A;  1GFM A;  2Y0H A;  3VZU X;  3WI4 A;  4FSO A;  4LSH A;  3NSG A;  1BH3 A;  4FMS A;  4C69 X;  7PRN A;  2K4T A;  4FT6 A;  1PHO A;  3FYX A;  2XE2 A;  2XE3 A;  3VZW X;  1BT9 A;  4RJX A;  3T20 A;  4KRA A;  1GFP A;  4AUI A;  3A2S X;  4LSF A;  3VZT X;  3POX A;  2FGQ X;  5DL8 A;  4FRT A;  2ODJ A;  2Y0K A;  5DL5 A;  4D64 A;  2Y2X A;  4D5U A;  4GCQ A;  3EMN X;  3T0S A;  2J4U P;  8PRN A;  5JDP A;  4BUM X;  4KR4 A;  2QTK A;  1H6S 1;  2FGR A;  2J1N A;  4GCP A;  5DL7 A;  2ZLD A;  3VY9 X;  3HWB A;  3WI5 A;  2Y0L A;  3POU A;  3SYB A;  1E54 A;  3SY7 A;  2PRN A;  2POR A;  4RJW A;  3SZD A;  6PRN A;  2O4V A;  2XE1 A;  3T24 A;  1OSM A;  2ZFG A;  3UPG A;  3VY8 X;  4JFB A;  1MPF A;  1HXU A;  1PRN A;  3PRN A;  4D65 A;  3SZV A;  3POR A;  1GFN A;  5DL6 A;  1GFO A;  5FVN A;  4GCS A;  1HXX A;  4FOZ A;  3HW9 A;  4LSE A;  3SYS A;  4FSP A;  3O0E A;  2OMF A;  3UU2 A;  3SY9 A;  5PRN A;  4KR8 A;  4LSI A;  1OPF A;  1GFQ A;  1HXT A;  3JTY A;  3POQ A;  2XE5 A;  3K19 A; 
#chains in the Genus database with same CATH topology
 2XG6 A;  2R4O A;  4FRX A;  2M06 A;  4PJ0 O;  4O4U A;  1GFM A;  2F1V A;  2Y0H A;  3VZU X;  3DWN A;  5TIS O;  4PR7 A;  3WI4 A;  4AYI D;  4FSO A;  4LSH A;  1Q9G A;  4AYD C;  1QJP A;  4GHB A;  3AA7 B;  3NSG A;  4AZL A;  4AYN A;  1BH3 A;  1IZN A;  4C4V B;  4FMS A;  3C5O A;  4C69 X;  4O49 A;  4N75 A;  7PRN A;  4N74 A;  3A0H O;  2WJR A;  3AA0 A;  2K4T A;  4FT6 A;  5G3A A;  2GE4 A;  5B66 O;  1PHO A;  1S5L O;  3DWO X;  1G90 A;  2R4P A;  1MM5 A;  4PUX A;  5B5E O;  1T16 A;  2MNH A;  1BXW A;  1ZHZ A;  3FYX A;  3LK2 B;  4FES A;  4XNL A;  5G38 A;  3AA1 B;  4AKR B;  3BRY A;  5GTH O;  1MM4 A;  2N2L A;  2XE3 A;  2XE2 A;  2ERV A;  4N59 A;  2R4N A;  3VZW X;  5ADX L;  2XTQ A;  4K3C A;  1BT9 A;  4RJX A;  5EE2 A;  3T20 A;  4F4B A;  3DZM A;  3HOE A;  2F1C X;  2JMM A;  4KRA A;  4B61 A;  1GFP A;  4AUI A;  3A2S X;  1QJ8 A;  4LSF A;  2KDY A;  2R88 A;  3VZT X;  4AYM C;  3POX A;  4IL6 O;  3DA3 A;  2FGQ X;  5DL8 A;  4FZM A;  5IYU A;  3AA6 B;  3TZG A;  3BRZ A;  4FRT A;  4JCH A;  5G26 A;  4UB8 O;  2ODJ A;  4GF4 A;  3LK3 B;  1ZHW A;  2AXT O;  2JQY A;  2Y0K A;  1THQ A;  4K3B A;  2KC0 A;  2MHL A;  2X9K A;  2Y2X A;  5DL5 A;  4O3Y A;  4QQ1 A;  4D5U A;  4E1S A;  4GCQ A;  4CTD A;  2KXP A;  2IWW A;  3EMN X;  3T0S A;  2J4U P;  8PRN A;  4RLC A;  5JDP A;  3AAE A;  2F1T A;  4BUM X;  2WVP A;  4KR4 A;  3KVD D;  4FZN A;  1ZHY A;  2R4L A;  6PRN A;  3AAA A;  3HOL A;  3PGR A;  4O3W A;  3PGS A;  2QTK A;  1H6S 1;  2Y7S A;  2FGR A;  4FQE A;  4RLB A;  2J1N A;  2K0L A;  2WJQ A;  1IZN B;  4GCP A;  4O3Z A;  5DL7 A;  2ZLD A;  4AFK A;  3VY9 X;  3HWB A;  3WI5 A;  3G7G A;  4G76 A;  2Y0L A;  4E1T A;  2YPV A;  4FUV A;  4Z3T A;  3POU A;  5AFU L;  3AA0 B;  3SYB A;  3V8U A;  1E54 A;  2LFU A;  3QRC A;  3RBH A;  5T5F A;  3LK4 1;  3SY7 A;  2PRN A;  2POR A;  4RJW A;  1ORM A;  3AAE B;  2O4V A;  3AA7 A;  2XMX A;  2XE1 A;  3SZD A;  3T24 A;  3UAQ A;  4AYE C;  4C00 A;  2LHF A;  1ZHT A;  1OSM A;  2ZFG A;  2N2M A;  3PGU A;  5GTI O;  3UPG A;  3VY8 X;  5KAF O;  2W80 C;  3NJT A;  2YNK A;  4JFB A;  1MPF A;  1Q9F A;  3KZI O;  1HXU A;  3BS0 A;  1PRN A;  3PRN A;  2XTR A;  3DA4 A;  4XNK A;  4D65 A;  3SZV A;  2KZ7 A;  4FZL A;  3POR A;  4D64 A;  1GFN A;  5DL6 A;  5KAI O;  5ADX K;  4O3X B;  3LK2 A;  1QJ9 A;  1GFO A;  5FVN A;  3VE1 A;  3AA1 A;  4AKR A;  4GCS A;  5GV0 A;  3PQS A;  1HXX A;  1P4T A;  1YS5 A;  4FOZ A;  4AKM A;  3PQU A;  3VE2 A;  4U9C A;  3HW9 A;  4LSE A;  3SYS A;  4FSP A;  3O0E A;  2OMF A;  5E79 O;  3SY9 A;  3UU2 A;  2R89 A;  5AFU K;  5G39 A;  5PRN A;  4KR8 A;  2M07 A;  5H2F O;  3QRA A;  3GP6 A;  4O4X A;  3JCU O;  2KXP B;  1T1L A;  4LSI A;  1OPF A;  1ZHX A;  2KZ7 B;  3A0B O;  3AA6 A;  2X27 X;  3AAA B;  4N58 A;  1GFQ A;  3PF1 A;  4C4V A;  4G75 A;  4UB6 O;  3LK3 A;  1HXT A;  4RL9 A;  3JTY A;  2IWV A;  2R8A A;  2XE5 A;  3POQ A;  5D5D A;  3LK4 2;  3WU2 O;  3K19 A;  2W81 C; 
#chains in the Genus database with same CATH homology
 2XG6 A;  4FRX A;  2M06 A;  4O4U A;  1GFM A;  2F1V A;  2Y0H A;  3VZU X;  3WI4 A;  4AYI D;  4FSO A;  4LSH A;  1Q9G A;  4AYD C;  1QJP A;  4GHB A;  3AA7 B;  3NSG A;  4AZL A;  4AYN A;  1BH3 A;  1IZN A;  4FMS A;  3C5O A;  4C69 X;  4O49 A;  7PRN A;  3AA0 A;  2K4T A;  4FT6 A;  2GE4 A;  1PHO A;  1G90 A;  1MM5 A;  4PUX A;  2MNH A;  3LK2 B;  1BXW A;  1ZHZ A;  3FYX A;  4FES A;  4XNL A;  4AKR B;  3AA1 B;  1MM4 A;  2N2L A;  2XE3 A;  2XE2 A;  2ERV A;  4N59 A;  5ADX L;  3VZW X;  2XTQ A;  1BT9 A;  4RJX A;  5EE2 A;  3T20 A;  4F4B A;  3HOE A;  2JMM A;  4KRA A;  4B61 A;  1GFP A;  4AUI A;  3A2S X;  1QJ8 A;  4LSF A;  2KDY A;  3VZT X;  4AYM C;  3POX A;  3DA3 A;  2FGQ X;  5DL8 A;  4FZM A;  5IYU A;  3AA6 B;  3TZG A;  4FRT A;  4JCH A;  5G26 A;  2ODJ A;  4GF4 A;  3LK3 B;  1ZHW A;  2Y0K A;  5DL5 A;  1THQ A;  4D64 A;  2KC0 A;  2MHL A;  2Y2X A;  4D5U A;  4O3Y A;  4QQ1 A;  4E1S A;  4GCQ A;  2KXP A;  3EMN X;  3T0S A;  2J4U P;  8PRN A;  4RLC A;  5JDP A;  3AAE A;  2F1T A;  4BUM X;  4KR4 A;  3KVD D;  4FZN A;  1ZHY A;  3AAA A;  3HOL A;  4O3W A;  2QTK A;  1H6S 1;  2Y7S A;  2FGR A;  4RLB A;  2J1N A;  2K0L A;  4GCP A;  1IZN B;  4O3Z A;  5DL7 A;  2ZLD A;  4AFK A;  3VY9 X;  3HWB A;  3WI5 A;  3G7G A;  4G76 A;  2Y0L A;  4E1T A;  2YPV A;  4FUV A;  4Z3T A;  3POU A;  5AFU L;  3AA0 B;  3SYB A;  3V8U A;  1E54 A;  2LFU A;  3QRC A;  3RBH A;  5T5F A;  3LK4 1;  3SY7 A;  2PRN A;  2POR A;  4RJW A;  1ORM A;  3AAE B;  2O4V A;  3AA7 A;  2XMX A;  2XE1 A;  3SZD A;  3T24 A;  3UAQ A;  4AYE C;  6PRN A;  1ZHT A;  1OSM A;  2LHF A;  2ZFG A;  2N2M A;  3UPG A;  3VY8 X;  2W80 C;  2YNK A;  4JFB A;  1MPF A;  1Q9F A;  1HXU A;  1PRN A;  3PRN A;  2XTR A;  3DA4 A;  4XNK A;  4D65 A;  3SZV A;  2KZ7 A;  4FZL A;  3POR A;  1GFN A;  5DL6 A;  5ADX K;  4O3X B;  3LK2 A;  1QJ9 A;  1GFO A;  5FVN A;  3VE1 A;  3AA1 A;  4AKR A;  4GCS A;  5GV0 A;  3PQS A;  1HXX A;  1P4T A;  1YS5 A;  4FOZ A;  4AKM A;  3PQU A;  3VE2 A;  4U9C A;  3HW9 A;  4LSE A;  3SYS A;  4FSP A;  3O0E A;  2OMF A;  3UU2 A;  3SY9 A;  5AFU K;  5PRN A;  4KR8 A;  2M07 A;  3QRA A;  3GP6 A;  4O4X A;  2KXP B;  4LSI A;  1OPF A;  1ZHX A;  2KZ7 B;  3AA6 A;  2X27 X;  3AAA B;  4N58 A;  1GFQ A;  4G75 A;  3LK3 A;  1HXT A;  4RL9 A;  3JTY A;  3POQ A;  5D5D A;  2XE5 A;  3LK4 2;  3K19 A;  2W81 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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