3WOBA

Crystal structure of a prostate-specific wga16 glycoprotein lectin, form i
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
134
structure length
134
Chain Sequence
GQMFGNGKGSYFITSKDNETGITGIRVFVGPVGLIKSIQVRYGSSWSEKYGIPGGKAHELILHPGEHIISIYGRYRTFLQHVTLITNQGRSASFGLETGKGFFAAPNLTGQVLEGVYGQFWLYGITGIGFTWGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords hypothetical protein
publication title Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm
pubmed doi rcsb
source organism Sus scrofa
total genus 21
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2013-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3wobA00
4AKDA 4PIUA 3VY6A 4PIKA 1UH1A 1C3NA 3LL1A 4R6NA 1JOTA 1KUJA 3P8SA 4AK4A 3LL2A 4R6PA 5J50A 4AKCA 1TOQA 3LLZA 5AV7A 5EXGA 2GUDA 2GUEA 4DDNA 3R51A 1X1VA 3APAA 3O44A 3VZFA 1JACA 2GUCA 4PITA 3MITA 3LKYA 3VY7A 1PXDA 4R6QA 4R6RA 2HYQA 1UGWC 4R6OA 1M26A 1C3KA 2BN0A 3WOBA 3LL0A 1ZGSA 5J4TA 1UH0A 5JM1A 2BMYA 1XXRA 2GTYA 2GUXA 3VZGA 3WOCA 3R50A 5J4XA 1WS5A 2JZ4A 1UGWA 1C3MA 1VBPA 1WS4A 1UGXA 4PIFA 5J51A 1OUWA 3R52A 4WOGA 1KU8A 1J4UA 1WS5C 3MIVA 5BN6E 3VZEA 4GX7A 1WS4C 3LLYA 1J4TA 1XXQA 1XEZA 2BMZA 1UGYA 1J4SA 1TP8A 1ZGRA 2HYRA 1VBOA 2NUOA 2NU5A 4AKBA 3AQGA 1UGYC 3MIUA 4MQ0A 3LM1A
chains in the Genus database with same CATH superfamily
4QX3A 4AKDA 3TOWA 4PIUA 3VY6A 4PIKA 1UH1A 1C3NA 4QX1A 3LL1A 4R6NA 1JOTA 1KUJA 3P8SA 4W8JA 4AK4A 4D8MA 3LL2A 4R6PA 5J50A 4AKCA 1TOQA 3LLZA 5AV7A 2QP2A 5EXGA 2GUDA 2GUEA 4ARYA 4DDNA 3R51A 1X1VA 4MOAA 3APAA 3O44A 3VZFA 1JACA 2GUCA 4PITA 3MITA 3LKYA 3VY7A 1I5PA 1PXDA 4R6QA 4R6RA 1JI6A 2HYQA 1UGWC 4R6OA 1M26A 1C3KA 2BN0A 3WOBA 3LL0A 1ZGSA 5J4TA 1UH0A 5JM1A 2BMYA 1XXRA 2GTYA 2GUXA 3VZGA 3WOCA 3R50A 5J4XA 3EB7A 1WS5A 2JZ4A 1UGWA 1C3MA 1VBPA 1WS4A 4ARXA 1UGXA 4PIFA 5J51A 1OUWA 3R52A 4WOGA 1KU8A 1J4UA 1WS5C 3MIVA 5BN6E 4QX2A 1DLCA 1VMOA 3VZEA 4GX7A 1WS4C 3LLYA 1J4TA 1XXQA 1XEZA 2BMZA 1UGYA 1J4SA 1TP8A 2C9KA 1ZGRA 2HYRA 4QX0A 1VBOA 2NUOA 2NU5A 1W99A 4AKBA 3AQGA 1UGYC 3MIUA 4MQ0A 3LM1A 1CIYA
chains in the Genus database with same CATH topology
4AKDA 4PIUA 3VY6A 4PIKA 1UH1A 1C3NA 3LL1A 4R6NA 1JOTA 1KUJA 3P8SA 4AK4A 3LL2A 4R6PA 5J50A 4AKCA 1TOQA 3LLZA 5AV7A 5EXGA 2GUDA 2GUEA 4DDNA 3R51A 1X1VA 3APAA 3O44A 3VZFA 1JACA 2GUCA 4PITA 3MITA 3LKYA 3VY7A 1PXDA 4R6QA 4R6RA 2HYQA 1UGWC 4R6OA 1M26A 1C3KA 2BN0A 3WOBA 3LL0A 1ZGSA 5J4TA 1UH0A 5JM1A 2BMYA 1XXRA 2GTYA 2GUXA 3VZGA 3WOCA 3R50A 5J4XA 1WS5A 2JZ4A 1UGWA 1C3MA 1VBPA 1WS4A 1UGXA 4PIFA 5J51A 1OUWA 3R52A 4WOGA 1KU8A 1J4UA 1WS5C 3MIVA 5BN6E 3VZEA 4GX7A 1WS4C 3LLYA 1J4TA 1XXQA 1XEZA 2BMZA 1UGYA 1J4SA 1TP8A 1ZGRA 2HYRA 1VBOA 2NUOA 2NU5A 4AKBA 3AQGA 1UGYC 3MIUA 4MQ0A 3LM1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKD A;  4PIU A;  3VY6 A;  4PIK A;  1UH1 A;  1C3N A;  3LL1 A;  4R6N A;  1JOT A;  1KUJ A;  3P8S A;  4AK4 A;  3LL2 A;  4R6P A;  5J50 A;  4AKC A;  1TOQ A;  3LLZ A;  5AV7 A;  5EXG A;  2GUD A;  2GUE A;  4DDN A;  3R51 A;  1X1V A;  3APA A;  3O44 A;  3VZF A;  1JAC A;  2GUC A;  4PIT A;  3MIT A;  3LKY A;  3VY7 A;  1PXD A;  4R6Q A;  4R6R A;  2HYQ A;  1UGW C;  4R6O A;  1M26 A;  1C3K A;  2BN0 A;  3WOB A;  3LL0 A;  1ZGS A;  5J4T A;  1UH0 A;  5JM1 A;  2BMY A;  1XXR A;  2GTY A;  2GUX A;  3VZG A;  3WOC A;  3R50 A;  5J4X A;  1WS5 A;  2JZ4 A;  1UGW A;  1C3M A;  1VBP A;  1WS4 A;  1UGX A;  4PIF A;  5J51 A;  1OUW A;  3R52 A;  4WOG A;  1KU8 A;  1J4U A;  1WS5 C;  3MIV A;  5BN6 E;  3VZE A;  4GX7 A;  1WS4 C;  3LLY A;  1J4T A;  1XXQ A;  1XEZ A;  2BMZ A;  1UGY A;  1J4S A;  1TP8 A;  1ZGR A;  2HYR A;  1VBO A;  2NUO A;  2NU5 A;  4AKB A;  3AQG A;  1UGY C;  3MIU A;  4MQ0 A;  3LM1 A; 
#chains in the Genus database with same CATH topology
 4QX3 A;  4AKD A;  3TOW A;  4PIU A;  3VY6 A;  4PIK A;  1UH1 A;  1C3N A;  4QX1 A;  3LL1 A;  4R6N A;  1JOT A;  1KUJ A;  3P8S A;  4W8J A;  4AK4 A;  4D8M A;  3LL2 A;  4R6P A;  5J50 A;  4AKC A;  1TOQ A;  3LLZ A;  5AV7 A;  2QP2 A;  5EXG A;  2GUD A;  2GUE A;  4ARY A;  4DDN A;  3R51 A;  1X1V A;  4MOA A;  3APA A;  3O44 A;  3VZF A;  1JAC A;  2GUC A;  4PIT A;  3MIT A;  3LKY A;  3VY7 A;  1I5P A;  1PXD A;  4R6Q A;  4R6R A;  1JI6 A;  2HYQ A;  1UGW C;  4R6O A;  1M26 A;  1C3K A;  2BN0 A;  3WOB A;  3LL0 A;  1ZGS A;  5J4T A;  1UH0 A;  5JM1 A;  2BMY A;  1XXR A;  2GTY A;  2GUX A;  3VZG A;  3WOC A;  3R50 A;  5J4X A;  3EB7 A;  1WS5 A;  2JZ4 A;  1UGW A;  1C3M A;  1VBP A;  1WS4 A;  4ARX A;  1UGX A;  4PIF A;  5J51 A;  1OUW A;  3R52 A;  4WOG A;  1KU8 A;  1J4U A;  1WS5 C;  3MIV A;  5BN6 E;  4QX2 A;  1DLC A;  1VMO A;  3VZE A;  4GX7 A;  1WS4 C;  3LLY A;  1J4T A;  1XXQ A;  1XEZ A;  2BMZ A;  1UGY A;  1J4S A;  1TP8 A;  2C9K A;  1ZGR A;  2HYR A;  4QX0 A;  1VBO A;  2NUO A;  2NU5 A;  1W99 A;  4AKB A;  3AQG A;  1UGY C;  3MIU A;  4MQ0 A;  3LM1 A;  1CIY A; 
#chains in the Genus database with same CATH homology
 4AKD A;  4PIU A;  3VY6 A;  4PIK A;  1UH1 A;  1C3N A;  3LL1 A;  4R6N A;  1JOT A;  1KUJ A;  3P8S A;  4AK4 A;  3LL2 A;  4R6P A;  5J50 A;  4AKC A;  1TOQ A;  3LLZ A;  5AV7 A;  5EXG A;  2GUD A;  2GUE A;  4DDN A;  3R51 A;  1X1V A;  3APA A;  3O44 A;  3VZF A;  1JAC A;  2GUC A;  4PIT A;  3MIT A;  3LKY A;  3VY7 A;  1PXD A;  4R6Q A;  4R6R A;  2HYQ A;  1UGW C;  4R6O A;  1M26 A;  1C3K A;  2BN0 A;  3WOB A;  3LL0 A;  1ZGS A;  5J4T A;  1UH0 A;  5JM1 A;  2BMY A;  1XXR A;  2GTY A;  2GUX A;  3VZG A;  3WOC A;  3R50 A;  5J4X A;  1WS5 A;  2JZ4 A;  1UGW A;  1C3M A;  1VBP A;  1WS4 A;  1UGX A;  4PIF A;  5J51 A;  1OUW A;  3R52 A;  4WOG A;  1KU8 A;  1J4U A;  1WS5 C;  3MIV A;  5BN6 E;  3VZE A;  4GX7 A;  1WS4 C;  3LLY A;  1J4T A;  1XXQ A;  1XEZ A;  2BMZ A;  1UGY A;  1J4S A;  1TP8 A;  1ZGR A;  2HYR A;  1VBO A;  2NUO A;  2NU5 A;  4AKB A;  3AQG A;  1UGY C;  3MIU A;  4MQ0 A;  3LM1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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