3WTLA

Crystal structure of lymnaea stagnalis acetylcholine binding protein complexed with nitromethylene analogue of imidacloprid
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
208
structure length
208
Chain Sequence
AADRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWDSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Acetylcholine-binding protein
publication title Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions
pubmed doi rcsb
source organism Lymnaea stagnalis
total genus 52
structure length 208
sequence length 208
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2014-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3wtlA00
2X00D 4QACA 3UU5A 5J5FA 4LMKA 1UW6A 2BR8A 2PH9A 4ZRUA 5BP0A 4QH5A 2BYRA 2BG9C 3UU8A 4HFDA 3UU3A 4HFIA 3TLUA 2QC1B 2YMEA 4AFHA 2BR7A 4AFTA 4A97A 4HFEA 3TLTA 5L4HA 2XNUA 2XYSA 2C9TA 2BYPA 4XHEA 3C84A 4ZZBA 3LSVA 2X00A 4Z91A 3C79A 4ZK4A 4ZR6A 4ZK1A 4NZBA 5JMEA 5AFKA 4XK9A 3JAEA 5L47A 3TLWA 3UQ4A 4UM1A 4TWDA 1UX2A 2PGZA 2XZ5A 5HEUA 3T4MA 3U8NA 4BQTA 5J5HA 2XQ9A 3UU4A 5AFNA 2WNCA 3WIPA 2ZJUA 2BJ0A 2Y56A 3U8MA 5J5GA 3UQ7A 2YMDA 5AFJA 5SYOA 5AFLA 4HQPA 2Y54A 4HFCA 5BRXA 4FRRA 3RIAA 3ZKRA 2YKSA 4WV9A 5CFBA 4QH4A 4UXUA 2XZ6A 2ZJVA 3TLVA 3GUAA 2VL0A 2BG9B 3WTMA 2XQ7A 2Y57A 5KE4A 3SH1A 4TWHA 3WTOA 3ZDGA 2XQ8A 2WZYA 2BYQA 3WTNA 4AFGA 5AFHA 3P4WA 4TNVA 4LMJA 4ILBA 3SQ9A 5KZUA 2Y7YA 2BYNA 4BFQA 4IL4A 4QABA 3PMZA 4QH1A 5HCMA 5LG3A 3RIFA 4B5DA 4TWFA 2BG9A 3JAFA 3SQ6A 4UM3S 3U8KA 3SIOA 5J5IA 4PIRA 5AFMB 4TNWA 3U8JA 3ZDHA 4X5TA 5TVCA 4UM3P 5HEOA 4EZ1A 2XQ5A 3EHZA 4A98A 2W8FA 4UM3A 2XYTA 4ILCA 2WNJA 5HCJA 2XQ3A 3P50A 5L4EA 5AINA 1UV6A 3RI5A 2UZ6A 4Z90A 1I9BA 2WN9A 4IL9A 5AFMA 3WTJA 5J0ZA 5IUXA 4ILAA 3JADA 4ALXA 3WTIA 5BW2A 2BG9E 5FJVA 5HEHA 5HEJA 3WTLA 2BYSA 3RHWA 4HFHA 4F8HA 3RQUA 2XQ6A 4NPPA 5HEGA 4DBMA 2XNVA 2XNTA 2WNLA 2Y58A 2XQAA 5LXBA 4ZJSA 4LMLA 3U8LA 2XQ4A 3UU6A 4D01A 3IGQA 3WTKA 3UUBA 2W8GA 3PEOA 5CO5A 3WTHA 4COFA 4ZJTA 3TLSA 2YN6A 4QAAA 3RQWA 3EAMA 3EI0A 2YOEA 4ZZCA 4UY2A 4IREA 4HFBA
chains in the Genus database with same CATH superfamily
2X00D 4QACA 3UU5A 5J5FA 4LMKA 1UW6A 2BR8A 2PH9A 4ZRUA 5BP0A 4QH5A 2BYRA 2BG9C 3UU8A 4HFDA 3UU3A 4HFIA 3TLUA 2QC1B 2YMEA 4AFHA 2BR7A 4AFTA 4A97A 4HFEA 3TLTA 5L4HA 2XNUA 2XYSA 2C9TA 2BYPA 4XHEA 3C84A 4ZZBA 3LSVA 2X00A 4Z91A 3C79A 4ZK4A 4ZR6A 4ZK1A 4NZBA 5JMEA 5AFKA 4XK9A 3JAEA 5L47A 3TLWA 3UQ4A 4UM1A 4TWDA 1UX2A 2PGZA 2XZ5A 5HEUA 3T4MA 3U8NA 4BQTA 5J5HA 2XQ9A 3UU4A 5AFNA 2WNCA 3WIPA 2ZJUA 2BJ0A 2Y56A 3U8MA 5J5GA 3UQ7A 2YMDA 5AFJA 5SYOA 5AFLA 4HQPA 2Y54A 4HFCA 5BRXA 4FRRA 3RIAA 3ZKRA 2YKSA 4WV9A 5CFBA 4QH4A 4UXUA 2XZ6A 2ZJVA 3TLVA 3GUAA 2VL0A 2BG9B 3WTMA 2XQ7A 2Y57A 5KE4A 3SH1A 4TWHA 3WTOA 3ZDGA 2XQ8A 2WZYA 2BYQA 3WTNA 4AFGA 5AFHA 3P4WA 4TNVA 4LMJA 4ILBA 3SQ9A 5KZUA 2Y7YA 2BYNA 4BFQA 4IL4A 4QABA 3PMZA 4QH1A 5HCMA 5LG3A 3RIFA 4B5DA 4TWFA 2BG9A 3JAFA 3SQ6A 4UM3S 3U8KA 3SIOA 5J5IA 4PIRA 5AFMB 4TNWA 3U8JA 3ZDHA 4X5TA 5TVCA 4UM3P 5HEOA 4EZ1A 2XQ5A 3EHZA 4A98A 2W8FA 4UM3A 2XYTA 4ILCA 2WNJA 5HCJA 2XQ3A 3P50A 5L4EA 5AINA 1UV6A 3RI5A 2UZ6A 4Z90A 1I9BA 2WN9A 4IL9A 5AFMA 3WTJA 5J0ZA 5IUXA 4ILAA 3JADA 4ALXA 3WTIA 5BW2A 2BG9E 5FJVA 5HEHA 5HEJA 3WTLA 2BYSA 3RHWA 4HFHA 4F8HA 3RQUA 2XQ6A 4NPPA 5HEGA 4DBMA 2XNVA 2XNTA 2WNLA 2Y58A 2XQAA 5LXBA 4ZJSA 4LMLA 3U8LA 2XQ4A 3UU6A 4D01A 3IGQA 3WTKA 3UUBA 2W8GA 3PEOA 5CO5A 3WTHA 4COFA 4ZJTA 3TLSA 2YN6A 4QAAA 3RQWA 3EAMA 3EI0A 2YOEA 4ZZCA 4UY2A 4IREA 4HFBA
chains in the Genus database with same CATH topology
2X00D 4QACA 3UU5A 5J5FA 4LMKA 1UW6A 2BR8A 2PH9A 4ZRUA 5BP0A 4QH5A 2BYRA 2BG9C 3UU8A 4HFDA 3UU3A 4HFIA 3TLUA 2QC1B 2YMEA 4AFHA 2BR7A 4AFTA 4A97A 4HFEA 3TLTA 5L4HA 2XNUA 2XYSA 2C9TA 2BYPA 4XHEA 3C84A 4ZZBA 3LSVA 2X00A 4Z91A 3C79A 4ZK4A 4ZR6A 4ZK1A 4NZBA 5JMEA 5AFKA 4XK9A 3JAEA 5L47A 3TLWA 3UQ4A 4UM1A 4TWDA 1UX2A 2PGZA 2XZ5A 5HEUA 3T4MA 3U8NA 4BQTA 5J5HA 2XQ9A 3UU4A 5AFNA 2WNCA 3WIPA 2ZJUA 2BJ0A 2Y56A 3U8MA 5J5GA 3UQ7A 2YMDA 5AFJA 5SYOA 5AFLA 4HQPA 2Y54A 4HFCA 5BRXA 4FRRA 3RIAA 3ZKRA 2YKSA 4WV9A 5CFBA 4QH4A 4UXUA 2XZ6A 2ZJVA 3TLVA 3GUAA 2VL0A 2BG9B 3WTMA 2XQ7A 2Y57A 5KE4A 3SH1A 4TWHA 3WTOA 3ZDGA 2XQ8A 2WZYA 2BYQA 3WTNA 4AFGA 5AFHA 3P4WA 4TNVA 4LMJA 4ILBA 3SQ9A 5KZUA 2Y7YA 2BYNA 4BFQA 4IL4A 4QABA 3PMZA 4QH1A 5HCMA 5LG3A 3RIFA 4B5DA 4TWFA 2BG9A 3JAFA 3SQ6A 4UM3S 3U8KA 3SIOA 5J5IA 4PIRA 5AFMB 4TNWA 3U8JA 3ZDHA 4X5TA 5TVCA 4UM3P 5HEOA 4EZ1A 2XQ5A 3EHZA 4A98A 2W8FA 4UM3A 2XYTA 4ILCA 2WNJA 5HCJA 2XQ3A 3P50A 5L4EA 5AINA 1UV6A 3RI5A 2UZ6A 4Z90A 1I9BA 2WN9A 4IL9A 5AFMA 3WTJA 5J0ZA 5IUXA 4ILAA 3JADA 4ALXA 3WTIA 5BW2A 2BG9E 5FJVA 5HEHA 5HEJA 3WTLA 2BYSA 3RHWA 4HFHA 4F8HA 3RQUA 2XQ6A 4NPPA 5HEGA 4DBMA 2XNVA 2XNTA 2WNLA 2Y58A 2XQAA 5LXBA 4ZJSA 4LMLA 3U8LA 2XQ4A 3UU6A 4D01A 3IGQA 3WTKA 3UUBA 2W8GA 3PEOA 5CO5A 3WTHA 4COFA 4ZJTA 3TLSA 2YN6A 4QAAA 3RQWA 3EAMA 3EI0A 2YOEA 4ZZCA 4UY2A 4IREA 4HFBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X00 D;  4QAC A;  3UU5 A;  5J5F A;  4LMK A;  1UW6 A;  2BR8 A;  2PH9 A;  4ZRU A;  5BP0 A;  4QH5 A;  2BYR A;  2BG9 C;  3UU8 A;  4HFD A;  3UU3 A;  4HFI A;  3TLU A;  2QC1 B;  2YME A;  4AFH A;  2BR7 A;  4AFT A;  4A97 A;  4HFE A;  3TLT A;  5L4H A;  2XNU A;  2XYS A;  2C9T A;  2BYP A;  4XHE A;  3C84 A;  4ZZB A;  3LSV A;  2X00 A;  4Z91 A;  3C79 A;  4ZK4 A;  4ZR6 A;  4ZK1 A;  4NZB A;  5JME A;  5AFK A;  4XK9 A;  3JAE A;  5L47 A;  3TLW A;  3UQ4 A;  4UM1 A;  4TWD A;  1UX2 A;  2PGZ A;  2XZ5 A;  5HEU A;  3T4M A;  3U8N A;  4BQT A;  5J5H A;  2XQ9 A;  3UU4 A;  5AFN A;  2WNC A;  3WIP A;  2ZJU A;  2BJ0 A;  2Y56 A;  3U8M A;  5J5G A;  3UQ7 A;  2YMD A;  5AFJ A;  5SYO A;  5AFL A;  4HQP A;  2Y54 A;  4HFC A;  5BRX A;  4FRR A;  3RIA A;  3ZKR A;  2YKS A;  4WV9 A;  5CFB A;  4QH4 A;  4UXU A;  2XZ6 A;  2ZJV A;  3TLV A;  3GUA A;  2VL0 A;  2BG9 B;  3WTM A;  2XQ7 A;  2Y57 A;  5KE4 A;  3SH1 A;  4TWH A;  3WTO A;  3ZDG A;  2XQ8 A;  2WZY A;  2BYQ A;  3WTN A;  4AFG A;  5AFH A;  3P4W A;  4TNV A;  4LMJ A;  4ILB A;  3SQ9 A;  5KZU A;  2Y7Y A;  2BYN A;  4BFQ A;  4IL4 A;  4QAB A;  3PMZ A;  4QH1 A;  5HCM A;  5LG3 A;  3RIF A;  4B5D A;  4TWF A;  2BG9 A;  3JAF A;  3SQ6 A;  4UM3 S;  3U8K A;  3SIO A;  5J5I A;  4PIR A;  5AFM B;  4TNW A;  3U8J A;  3ZDH A;  4X5T A;  5TVC A;  4UM3 P;  5HEO A;  4EZ1 A;  2XQ5 A;  3EHZ A;  4A98 A;  2W8F A;  4UM3 A;  2XYT A;  4ILC A;  2WNJ A;  5HCJ A;  2XQ3 A;  3P50 A;  5L4E A;  5AIN A;  1UV6 A;  3RI5 A;  2UZ6 A;  4Z90 A;  1I9B A;  2WN9 A;  4IL9 A;  5AFM A;  3WTJ A;  5J0Z A;  5IUX A;  4ILA A;  3JAD A;  4ALX A;  3WTI A;  5BW2 A;  2BG9 E;  5FJV A;  5HEH A;  5HEJ A;  3WTL A;  2BYS A;  3RHW A;  4HFH A;  4F8H A;  3RQU A;  2XQ6 A;  4NPP A;  5HEG A;  4DBM A;  2XNV A;  2XNT A;  2WNL A;  2Y58 A;  2XQA A;  5LXB A;  4ZJS A;  4LML A;  3U8L A;  2XQ4 A;  3UU6 A;  4D01 A;  3IGQ A;  3WTK A;  3UUB A;  2W8G A;  3PEO A;  5CO5 A;  3WTH A;  4COF A;  4ZJT A;  3TLS A;  2YN6 A;  4QAA A;  3RQW A;  3EAM A;  3EI0 A;  2YOE A;  4ZZC A;  4UY2 A;  4IRE A;  4HFB A; 
#chains in the Genus database with same CATH topology
 2X00 D;  4QAC A;  3UU5 A;  5J5F A;  4LMK A;  1UW6 A;  2BR8 A;  2PH9 A;  4ZRU A;  5BP0 A;  4QH5 A;  2BYR A;  2BG9 C;  3UU8 A;  4HFD A;  3UU3 A;  4HFI A;  3TLU A;  2QC1 B;  2YME A;  4AFH A;  2BR7 A;  4AFT A;  4A97 A;  4HFE A;  3TLT A;  5L4H A;  2XNU A;  2XYS A;  2C9T A;  2BYP A;  4XHE A;  3C84 A;  4ZZB A;  3LSV A;  2X00 A;  4Z91 A;  3C79 A;  4ZK4 A;  4ZR6 A;  4ZK1 A;  4NZB A;  5JME A;  5AFK A;  4XK9 A;  3JAE A;  5L47 A;  3TLW A;  3UQ4 A;  4UM1 A;  4TWD A;  1UX2 A;  2PGZ A;  2XZ5 A;  5HEU A;  3T4M A;  3U8N A;  4BQT A;  5J5H A;  2XQ9 A;  3UU4 A;  5AFN A;  2WNC A;  3WIP A;  2ZJU A;  2BJ0 A;  2Y56 A;  3U8M A;  5J5G A;  3UQ7 A;  2YMD A;  5AFJ A;  5SYO A;  5AFL A;  4HQP A;  2Y54 A;  4HFC A;  5BRX A;  4FRR A;  3RIA A;  3ZKR A;  2YKS A;  4WV9 A;  5CFB A;  4QH4 A;  4UXU A;  2XZ6 A;  2ZJV A;  3TLV A;  3GUA A;  2VL0 A;  2BG9 B;  3WTM A;  2XQ7 A;  2Y57 A;  5KE4 A;  3SH1 A;  4TWH A;  3WTO A;  3ZDG A;  2XQ8 A;  2WZY A;  2BYQ A;  3WTN A;  4AFG A;  5AFH A;  3P4W A;  4TNV A;  4LMJ A;  4ILB A;  3SQ9 A;  5KZU A;  2Y7Y A;  2BYN A;  4BFQ A;  4IL4 A;  4QAB A;  3PMZ A;  4QH1 A;  5HCM A;  5LG3 A;  3RIF A;  4B5D A;  4TWF A;  2BG9 A;  3JAF A;  3SQ6 A;  4UM3 S;  3U8K A;  3SIO A;  5J5I A;  4PIR A;  5AFM B;  4TNW A;  3U8J A;  3ZDH A;  4X5T A;  5TVC A;  4UM3 P;  5HEO A;  4EZ1 A;  2XQ5 A;  3EHZ A;  4A98 A;  2W8F A;  4UM3 A;  2XYT A;  4ILC A;  2WNJ A;  5HCJ A;  2XQ3 A;  3P50 A;  5L4E A;  5AIN A;  1UV6 A;  3RI5 A;  2UZ6 A;  4Z90 A;  1I9B A;  2WN9 A;  4IL9 A;  5AFM A;  3WTJ A;  5J0Z A;  5IUX A;  4ILA A;  3JAD A;  4ALX A;  3WTI A;  5BW2 A;  2BG9 E;  5FJV A;  5HEH A;  5HEJ A;  3WTL A;  2BYS A;  3RHW A;  4HFH A;  4F8H A;  3RQU A;  2XQ6 A;  4NPP A;  5HEG A;  4DBM A;  2XNV A;  2XNT A;  2WNL A;  2Y58 A;  2XQA A;  5LXB A;  4ZJS A;  4LML A;  3U8L A;  2XQ4 A;  3UU6 A;  4D01 A;  3IGQ A;  3WTK A;  3UUB A;  2W8G A;  3PEO A;  5CO5 A;  3WTH A;  4COF A;  4ZJT A;  3TLS A;  2YN6 A;  4QAA A;  3RQW A;  3EAM A;  3EI0 A;  2YOE A;  4ZZC A;  4UY2 A;  4IRE A;  4HFB A; 
#chains in the Genus database with same CATH homology
 2X00 D;  4QAC A;  3UU5 A;  5J5F A;  4LMK A;  1UW6 A;  2BR8 A;  2PH9 A;  4ZRU A;  5BP0 A;  4QH5 A;  2BYR A;  2BG9 C;  3UU8 A;  4HFD A;  3UU3 A;  4HFI A;  3TLU A;  2QC1 B;  2YME A;  4AFH A;  2BR7 A;  4AFT A;  4A97 A;  4HFE A;  3TLT A;  5L4H A;  2XNU A;  2XYS A;  2C9T A;  2BYP A;  4XHE A;  3C84 A;  4ZZB A;  3LSV A;  2X00 A;  4Z91 A;  3C79 A;  4ZK4 A;  4ZR6 A;  4ZK1 A;  4NZB A;  5JME A;  5AFK A;  4XK9 A;  3JAE A;  5L47 A;  3TLW A;  3UQ4 A;  4UM1 A;  4TWD A;  1UX2 A;  2PGZ A;  2XZ5 A;  5HEU A;  3T4M A;  3U8N A;  4BQT A;  5J5H A;  2XQ9 A;  3UU4 A;  5AFN A;  2WNC A;  3WIP A;  2ZJU A;  2BJ0 A;  2Y56 A;  3U8M A;  5J5G A;  3UQ7 A;  2YMD A;  5AFJ A;  5SYO A;  5AFL A;  4HQP A;  2Y54 A;  4HFC A;  5BRX A;  4FRR A;  3RIA A;  3ZKR A;  2YKS A;  4WV9 A;  5CFB A;  4QH4 A;  4UXU A;  2XZ6 A;  2ZJV A;  3TLV A;  3GUA A;  2VL0 A;  2BG9 B;  3WTM A;  2XQ7 A;  2Y57 A;  5KE4 A;  3SH1 A;  4TWH A;  3WTO A;  3ZDG A;  2XQ8 A;  2WZY A;  2BYQ A;  3WTN A;  4AFG A;  5AFH A;  3P4W A;  4TNV A;  4LMJ A;  4ILB A;  3SQ9 A;  5KZU A;  2Y7Y A;  2BYN A;  4BFQ A;  4IL4 A;  4QAB A;  3PMZ A;  4QH1 A;  5HCM A;  5LG3 A;  3RIF A;  4B5D A;  4TWF A;  2BG9 A;  3JAF A;  3SQ6 A;  4UM3 S;  3U8K A;  3SIO A;  5J5I A;  4PIR A;  5AFM B;  4TNW A;  3U8J A;  3ZDH A;  4X5T A;  5TVC A;  4UM3 P;  5HEO A;  4EZ1 A;  2XQ5 A;  3EHZ A;  4A98 A;  2W8F A;  4UM3 A;  2XYT A;  4ILC A;  2WNJ A;  5HCJ A;  2XQ3 A;  3P50 A;  5L4E A;  5AIN A;  1UV6 A;  3RI5 A;  2UZ6 A;  4Z90 A;  1I9B A;  2WN9 A;  4IL9 A;  5AFM A;  3WTJ A;  5J0Z A;  5IUX A;  4ILA A;  3JAD A;  4ALX A;  3WTI A;  5BW2 A;  2BG9 E;  5FJV A;  5HEH A;  5HEJ A;  3WTL A;  2BYS A;  3RHW A;  4HFH A;  4F8H A;  3RQU A;  2XQ6 A;  4NPP A;  5HEG A;  4DBM A;  2XNV A;  2XNT A;  2WNL A;  2Y58 A;  2XQA A;  5LXB A;  4ZJS A;  4LML A;  3U8L A;  2XQ4 A;  3UU6 A;  4D01 A;  3IGQ A;  3WTK A;  3UUB A;  2W8G A;  3PEO A;  5CO5 A;  3WTH A;  4COF A;  4ZJT A;  3TLS A;  2YN6 A;  4QAA A;  3RQW A;  3EAM A;  3EI0 A;  2YOE A;  4ZZC A;  4UY2 A;  4IRE A;  4HFB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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