3ZSCA

Catalytic function and substrate recognition of the pectate lyase from thermotoga maritima
Total Genus 132
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
329
structure length
329
Chain Sequence
DKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEELEKYTTAEGKYVIVVDGTIVFEPKREIKVLSDKTIVGINDAKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGAKVHVEGNYFMGYGAVMAEAGIAFLPTRIMGPVEGYLTLGEGDAKNEFYYCKEPEVRPVEEGKPALDPREYYDYTLDPVQDVPKIVVDGAGAGKLV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords PECTATE TRISACCHARIDE-LYASE
publication title Catalytic Function and Substrate Recognition of the Pectate Lyase from Thermotoga Maritima
rcsb
source organism Thermotoga maritima
total genus 132
structure length 329
sequence length 329
ec nomenclature ec 4.2.2.22: Pectate trisaccharide-lyase.
pdb deposition date 2011-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3zscA00
3UW0A 3KRGA 4URRA 1O8KA 4OJ5A 2INVA 3ZSCA 4NK8A 4AVZA 4YZQA 1OGMX 4OJ6A 2X85A 2UVFA 2VBEA 2Z8GA 1X0CA 4Z06A 4C2LA 4XL9A 1BHEA 3ZPPA 4Z05A 1BN8A 2ODLA 1KCCA 3VSTA 2O04A 3LMWA 4XM3A 2PYGA 1JTAA 2O0WA 3GQAA 1PLUA 1NHCA 1O8DA 4YEJA 4XLCA 3SUCA 1O8JA 1RU4A 4OZZA 2O0VA 1OFLA 1O88A 2X6XA 4PMHA 1O8FA 1IDJA 4XN0A 1XG2A 1K5CA 2BSPA 4XN3A 2NTBA 2VBKA 4EW9A 4W8RA 4U4BA 1OFMA 2NT9A 1QJVA 3EQOA 4OJOA 3GRHA 4YZAA 4YZ0A 2NTPA 3JURA 4MR0A 1AIRA 4XLAA 3VMVA 1RMGA 2NSTA 3B90A 4MXNA 3GQ8A 1OGOX 4U49A 1O8HA 3FY3A 1O8LA 1O8EA 4I84A 1O8MA 4OZYA 4XR6A 1KCDA 2UVEA 2PECA 2X3HA 1DBOA 1OOCA 3GQ7A 1DBGA 2EWEA 2O17A 2X6WA 2QXZA 1JRGA 4OJLA 2INUA 2NTQA 3VSUA 1O8GA 1IB4A 2IQ7A 3GQ9A 1GQ8A 5C1EA 2QX3A 2X6YA 3B8YA 5C1CA 1RWRA 4NK6A 1H80A 1PXZA 4XQFA 3VSVA 3T9GA 1PE9A 4XMYA 2PYHA 4XONA 2VBMA 3EQNA 1CZFA 4W8TA 1HG8A 4XKWA 4XKVA 2QY1A 4OJPA 4W8SA 4YELA 4Z03A 4YZXA 1IA5A 2O1DA 1VBLA 4W8QA 1IDKA 1QCXA 4HWVA 4XLHA 4XORA 3VMWA 4XLFA 4XNFA 2NZMA 4XOTA 3WWGA 1EE6A 4XOPA 1KTWA 1WMRA 2NT6A 3B4NA 4XLEA 2NSPA 5AMVA 1O8IA 2VJJA 2VJIA
chains in the Genus database with same CATH superfamily
2VFOA 3KRGA 3UW0A 3PETA 2XTYA 4URRA 3N6ZA 1O8KA 4OJ5A 2INVA 3ZSCA 4NK8A 4AVZA 2VFPA 4YZQA 1OGMX 2F3LA 4OJ6A 2X85A 2UVFA 2VBEA 2Z8GA 3RIQA 1X0CA 3PSZA 3LJYA 2XTWA 1TYUA 4Z06A 4C2LA 4XL9A 3SQVA 1BHEA 3ZPPA 3BH7B 1BN8A 1OFEA 2ODLA 4Z05A 1KCCA 3AK5A 3VSTA 1LLWA 2O04A 3LMWA 1LM1A 4XM3A 1DABA 2PYGA 1JTAA 4YFOA 2O0WA 3BH6B 3GQAA 1PLUA 1NHCA 1TSPA 1O8DA 2O6WA 2IOUG 4XLCA 4YEJA 1O8JA 1RU4A 4OZZA 3SUCA 2O0VA 1OFLA 5JMCB 1O88A 2BM7A 2X6XA 3ML3A 4PMHA 2VFMA 1O8FA 1IDJA 4XN0A 3N90A 3JX8A 1XG2A 1K5CA 3NAWA 2BSPA 4XN3A 2NTBA 2VBKA 1QRCA 2BM6A 2J8IA 1TYVA 4W8RA 4EW9A 4U4BA 1QA2A 1OFMA 2YUHA 2NT9A 1QJVA 2XTXA 2V5IA 3EQOA 3GRHA 4OJOA 4YZAA 2NTPA 3JURA 4MR0A 1AIRA 4JRAC 4XLAA 1RMGA 2BX6A 3VMVA 1LLZA 2VFQA 2NSTA 3B90A 3NB2A 2BM4A 4MXNA 3GQ8A 1OGOX 4U49A 1KQ5A 1O8HA 3FY3A 3SYJA 1O8LA 1O8EA 1EZGA 4YDTA 4I84A 1O8MA 4OZYA 4XR6A 1KCDA 1K4ZA 2UVEA 5DNSA 2PECA 2X3HA 1DBOA 4V02C 1OOCA 2G0YA 4OPWA 4YC5A 3GQ7A 1DBGA 2J8KA 2EWEA 2O17A 2W7ZA 2X6WA 2QXZA 2XT4A 1K8FA 1JRGA 4OJLA 2INUA 2NTQA 3VSUA 1O8GA 1IB4A 2IQ7A 2B0RA 3GQ9A 1GQ8A 5C1EA 3SZEA 4KH3A 2QX3A 2X6YA 2VFNA 3B8YA 4YCQA 1WXRA 1HF2A 5C1CA 1TYWA 1RWRA 4NK6A 1H80A 1PXZA 4YZ0A 1L1IA 3H09A 4XQFA 3VSVA 3SY2A 1CLWA 3T9GA 1PE9A 4XMYA 2PYHA 4XONA 2VBMA 3EQNA 1QA1A 1CZFA 4W8TA 1HG8A 4OM9A 2QZAA 2XT2A 4XKWA 1QQ1A 1QRBA 2QY1A 4OJPA 4XKVA 1OFDA 4W8SA 4YELA 4Z03A 1EA0A 4YEIA 4YZXA 1IA5A 2O1DA 1VBLA 4W8QA 1IDKA 1QCXA 3LYCA 4HWVA 4XLHA 4XORA 4XLFA 3TH0A 3VMWA 2QYUA 4XNFA 2NZMA 3DU1X 4XOTA 2BM5A 1EE6A 4XOPA 3WWGA 1QA3A 1KTWA 5JLVC 1WMRA 2NT6A 3B4NA 4XLEA 2NSPA 5AMVA 3PSSA 1O8IA 1TYXA 2VJJA 3P4GA 2XC1A 2VJIA
chains in the Genus database with same CATH topology
3UW0A 3KRGA 4URRA 1O8KA 4OJ5A 2INVA 3ZSCA 4NK8A 4AVZA 4YZQA 1OGMX 4OJ6A 2X85A 2UVFA 2VBEA 2Z8GA 1X0CA 4Z06A 4C2LA 4XL9A 1BHEA 3ZPPA 4Z05A 1BN8A 2ODLA 1KCCA 3VSTA 2O04A 3LMWA 4XM3A 2PYGA 1JTAA 2O0WA 3GQAA 1PLUA 1NHCA 1O8DA 4YEJA 4XLCA 3SUCA 1O8JA 1RU4A 4OZZA 2O0VA 1OFLA 1O88A 2X6XA 4PMHA 1O8FA 1IDJA 4XN0A 1XG2A 1K5CA 2BSPA 4XN3A 2NTBA 2VBKA 4EW9A 4W8RA 4U4BA 1OFMA 2NT9A 1QJVA 3EQOA 4OJOA 3GRHA 4YZAA 4YZ0A 2NTPA 3JURA 4MR0A 1AIRA 4XLAA 3VMVA 1RMGA 2NSTA 3B90A 4MXNA 3GQ8A 1OGOX 4U49A 1O8HA 3FY3A 1O8LA 1O8EA 4I84A 1O8MA 4OZYA 4XR6A 1KCDA 2UVEA 2PECA 2X3HA 1DBOA 1OOCA 3GQ7A 1DBGA 2EWEA 2O17A 2X6WA 2QXZA 1JRGA 4OJLA 2INUA 2NTQA 3VSUA 1O8GA 1IB4A 2IQ7A 3GQ9A 1GQ8A 5C1EA 2QX3A 2X6YA 3B8YA 5C1CA 1RWRA 4NK6A 1H80A 1PXZA 4XQFA 3VSVA 3T9GA 1PE9A 4XMYA 2PYHA 4XONA 2VBMA 3EQNA 1CZFA 4W8TA 1HG8A 4XKWA 4XKVA 2QY1A 4OJPA 4W8SA 4YELA 4Z03A 4YZXA 1IA5A 2O1DA 1VBLA 4W8QA 1IDKA 1QCXA 4HWVA 4XLHA 4XORA 3VMWA 4XLFA 4XNFA 2NZMA 4XOTA 3WWGA 1EE6A 4XOPA 1KTWA 1WMRA 2NT6A 3B4NA 4XLEA 2NSPA 5AMVA 1O8IA 2VJJA 2VJIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UW0 A;  3KRG A;  4URR A;  1O8K A;  4OJ5 A;  2INV A;  3ZSC A;  4NK8 A;  4AVZ A;  4YZQ A;  1OGM X;  4OJ6 A;  2X85 A;  2UVF A;  2VBE A;  2Z8G A;  1X0C A;  4Z06 A;  4C2L A;  4XL9 A;  1BHE A;  3ZPP A;  4Z05 A;  1BN8 A;  2ODL A;  1KCC A;  3VST A;  2O04 A;  3LMW A;  4XM3 A;  2PYG A;  1JTA A;  2O0W A;  3GQA A;  1PLU A;  1NHC A;  1O8D A;  4YEJ A;  4XLC A;  3SUC A;  1O8J A;  1RU4 A;  4OZZ A;  2O0V A;  1OFL A;  1O88 A;  2X6X A;  4PMH A;  1O8F A;  1IDJ A;  4XN0 A;  1XG2 A;  1K5C A;  2BSP A;  4XN3 A;  2NTB A;  2VBK A;  4EW9 A;  4W8R A;  4U4B A;  1OFM A;  2NT9 A;  1QJV A;  3EQO A;  4OJO A;  3GRH A;  4YZA A;  4YZ0 A;  2NTP A;  3JUR A;  4MR0 A;  1AIR A;  4XLA A;  3VMV A;  1RMG A;  2NST A;  3B90 A;  4MXN A;  3GQ8 A;  1OGO X;  4U49 A;  1O8H A;  3FY3 A;  1O8L A;  1O8E A;  4I84 A;  1O8M A;  4OZY A;  4XR6 A;  1KCD A;  2UVE A;  2PEC A;  2X3H A;  1DBO A;  1OOC A;  3GQ7 A;  1DBG A;  2EWE A;  2O17 A;  2X6W A;  2QXZ A;  1JRG A;  4OJL A;  2INU A;  2NTQ A;  3VSU A;  1O8G A;  1IB4 A;  2IQ7 A;  3GQ9 A;  1GQ8 A;  5C1E A;  2QX3 A;  2X6Y A;  3B8Y A;  5C1C A;  1RWR A;  4NK6 A;  1H80 A;  1PXZ A;  4XQF A;  3VSV A;  3T9G A;  1PE9 A;  4XMY A;  2PYH A;  4XON A;  2VBM A;  3EQN A;  1CZF A;  4W8T A;  1HG8 A;  4XKW A;  4XKV A;  2QY1 A;  4OJP A;  4W8S A;  4YEL A;  4Z03 A;  4YZX A;  1IA5 A;  2O1D A;  1VBL A;  4W8Q A;  1IDK A;  1QCX A;  4HWV A;  4XLH A;  4XOR A;  3VMW A;  4XLF A;  4XNF A;  2NZM A;  4XOT A;  3WWG A;  1EE6 A;  4XOP A;  1KTW A;  1WMR A;  2NT6 A;  3B4N A;  4XLE A;  2NSP A;  5AMV A;  1O8I A;  2VJJ A;  2VJI A; 
#chains in the Genus database with same CATH topology
 2VFO A;  3KRG A;  3UW0 A;  3PET A;  2XTY A;  4URR A;  3N6Z A;  1O8K A;  4OJ5 A;  2INV A;  3ZSC A;  4NK8 A;  4AVZ A;  2VFP A;  4YZQ A;  1OGM X;  2F3L A;  4OJ6 A;  2X85 A;  2UVF A;  2VBE A;  2Z8G A;  3RIQ A;  1X0C A;  3PSZ A;  3LJY A;  2XTW A;  1TYU A;  4Z06 A;  4C2L A;  4XL9 A;  3SQV A;  1BHE A;  3ZPP A;  3BH7 B;  1BN8 A;  1OFE A;  2ODL A;  4Z05 A;  1KCC A;  3AK5 A;  3VST A;  1LLW A;  2O04 A;  3LMW A;  1LM1 A;  4XM3 A;  1DAB A;  2PYG A;  1JTA A;  4YFO A;  2O0W A;  3BH6 B;  3GQA A;  1PLU A;  1NHC A;  1TSP A;  1O8D A;  2O6W A;  2IOU G;  4XLC A;  4YEJ A;  1O8J A;  1RU4 A;  4OZZ A;  3SUC A;  2O0V A;  1OFL A;  5JMC B;  1O88 A;  2BM7 A;  2X6X A;  3ML3 A;  4PMH A;  2VFM A;  1O8F A;  1IDJ A;  4XN0 A;  3N90 A;  3JX8 A;  1XG2 A;  1K5C A;  3NAW A;  2BSP A;  4XN3 A;  2NTB A;  2VBK A;  1QRC A;  2BM6 A;  2J8I A;  1TYV A;  4W8R A;  4EW9 A;  4U4B A;  1QA2 A;  1OFM A;  2YUH A;  2NT9 A;  1QJV A;  2XTX A;  2V5I A;  3EQO A;  3GRH A;  4OJO A;  4YZA A;  2NTP A;  3JUR A;  4MR0 A;  1AIR A;  4JRA C;  4XLA A;  1RMG A;  2BX6 A;  3VMV A;  1LLZ A;  2VFQ A;  2NST A;  3B90 A;  3NB2 A;  2BM4 A;  4MXN A;  3GQ8 A;  1OGO X;  4U49 A;  1KQ5 A;  1O8H A;  3FY3 A;  3SYJ A;  1O8L A;  1O8E A;  1EZG A;  4YDT A;  4I84 A;  1O8M A;  4OZY A;  4XR6 A;  1KCD A;  1K4Z A;  2UVE A;  5DNS A;  2PEC A;  2X3H A;  1DBO A;  4V02 C;  1OOC A;  2G0Y A;  4OPW A;  4YC5 A;  3GQ7 A;  1DBG A;  2J8K A;  2EWE A;  2O17 A;  2W7Z A;  2X6W A;  2QXZ A;  2XT4 A;  1K8F A;  1JRG A;  4OJL A;  2INU A;  2NTQ A;  3VSU A;  1O8G A;  1IB4 A;  2IQ7 A;  2B0R A;  3GQ9 A;  1GQ8 A;  5C1E A;  3SZE A;  4KH3 A;  2QX3 A;  2X6Y A;  2VFN A;  3B8Y A;  4YCQ A;  1WXR A;  1HF2 A;  5C1C A;  1TYW A;  1RWR A;  4NK6 A;  1H80 A;  1PXZ A;  4YZ0 A;  1L1I A;  3H09 A;  4XQF A;  3VSV A;  3SY2 A;  1CLW A;  3T9G A;  1PE9 A;  4XMY A;  2PYH A;  4XON A;  2VBM A;  3EQN A;  1QA1 A;  1CZF A;  4W8T A;  1HG8 A;  4OM9 A;  2QZA A;  2XT2 A;  4XKW A;  1QQ1 A;  1QRB A;  2QY1 A;  4OJP A;  4XKV A;  1OFD A;  4W8S A;  4YEL A;  4Z03 A;  1EA0 A;  4YEI A;  4YZX A;  1IA5 A;  2O1D A;  1VBL A;  4W8Q A;  1IDK A;  1QCX A;  3LYC A;  4HWV A;  4XLH A;  4XOR A;  4XLF A;  3TH0 A;  3VMW A;  2QYU A;  4XNF A;  2NZM A;  3DU1 X;  4XOT A;  2BM5 A;  1EE6 A;  4XOP A;  3WWG A;  1QA3 A;  1KTW A;  5JLV C;  1WMR A;  2NT6 A;  3B4N A;  4XLE A;  2NSP A;  5AMV A;  3PSS A;  1O8I A;  1TYX A;  2VJJ A;  3P4G A;  2XC1 A;  2VJI A; 
#chains in the Genus database with same CATH homology
 3UW0 A;  3KRG A;  4URR A;  1O8K A;  4OJ5 A;  2INV A;  3ZSC A;  4NK8 A;  4AVZ A;  4YZQ A;  1OGM X;  4OJ6 A;  2X85 A;  2UVF A;  2VBE A;  2Z8G A;  1X0C A;  4Z06 A;  4C2L A;  4XL9 A;  1BHE A;  3ZPP A;  4Z05 A;  1BN8 A;  2ODL A;  1KCC A;  3VST A;  2O04 A;  3LMW A;  4XM3 A;  2PYG A;  1JTA A;  2O0W A;  3GQA A;  1PLU A;  1NHC A;  1O8D A;  4YEJ A;  4XLC A;  3SUC A;  1O8J A;  1RU4 A;  4OZZ A;  2O0V A;  1OFL A;  1O88 A;  2X6X A;  4PMH A;  1O8F A;  1IDJ A;  4XN0 A;  1XG2 A;  1K5C A;  2BSP A;  4XN3 A;  2NTB A;  2VBK A;  4EW9 A;  4W8R A;  4U4B A;  1OFM A;  2NT9 A;  1QJV A;  3EQO A;  4OJO A;  3GRH A;  4YZA A;  4YZ0 A;  2NTP A;  3JUR A;  4MR0 A;  1AIR A;  4XLA A;  3VMV A;  1RMG A;  2NST A;  3B90 A;  4MXN A;  3GQ8 A;  1OGO X;  4U49 A;  1O8H A;  3FY3 A;  1O8L A;  1O8E A;  4I84 A;  1O8M A;  4OZY A;  4XR6 A;  1KCD A;  2UVE A;  2PEC A;  2X3H A;  1DBO A;  1OOC A;  3GQ7 A;  1DBG A;  2EWE A;  2O17 A;  2X6W A;  2QXZ A;  1JRG A;  4OJL A;  2INU A;  2NTQ A;  3VSU A;  1O8G A;  1IB4 A;  2IQ7 A;  3GQ9 A;  1GQ8 A;  5C1E A;  2QX3 A;  2X6Y A;  3B8Y A;  5C1C A;  1RWR A;  4NK6 A;  1H80 A;  1PXZ A;  4XQF A;  3VSV A;  3T9G A;  1PE9 A;  4XMY A;  2PYH A;  4XON A;  2VBM A;  3EQN A;  1CZF A;  4W8T A;  1HG8 A;  4XKW A;  4XKV A;  2QY1 A;  4OJP A;  4W8S A;  4YEL A;  4Z03 A;  4YZX A;  1IA5 A;  2O1D A;  1VBL A;  4W8Q A;  1IDK A;  1QCX A;  4HWV A;  4XLH A;  4XOR A;  3VMW A;  4XLF A;  4XNF A;  2NZM A;  4XOT A;  3WWG A;  1EE6 A;  4XOP A;  1KTW A;  1WMR A;  2NT6 A;  3B4N A;  4XLE A;  2NSP A;  5AMV A;  1O8I A;  2VJJ A;  2VJI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...