4A1NA

Human mitochondrial endo-exonuclease
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
293
structure length
290
Chain Sequence
KAVLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHLDRTSDIRNICSVDTCKLLDFQEFTLYLSTRKIEGSVLRLEKIMVNLKNEIEPDDYFMSRYEKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords NUCLEASE EXOG, MITOCHONDRIAL
publication title Human Mitochondrial Endo-Exonuclease
rcsb
source organism Homo sapiens
total genus 76
structure length 290
sequence length 293
ec nomenclature ec 3.1.30.-:
pdb deposition date 2011-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease
A PF18026 Exog_C Endo/exonuclease (EXOG) C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 4a1nA01
2XGRA 4QN0A 4ZG7A 4ZG9A 5HRTA 5IJSA 5LIAA 3OWVA 5DLTA 2XRGA 3ISMA 1G8TA 3NKOA 3WAWA 4B56A 2XR9A 5KXAA 4QGOA 1QAEA 4ZG6A 4GTZA 5DLWA 5GKCA 3NKMA 4QH0A 1QL0A 3NKPA 3S5BA 3NKRA 5LQQA 3NKQA 3WAXA 4GTWA 5DLVA 5L0EA 3WAVA 4E3YA 1SMNA 3WAYA 4ZGAA 5IJQA 2O3BA 4A1NA 5L0BA 1ZM8A 3NKNA 5L0KA 5INHA 5GKPA 2XH3A 4GTXA 4GTYA
chains in the Genus database with same CATH superfamily
2XGRA 4QN0A 4ZG7A 4ZG9A 5HRTA 5IJSA 5LIAA 3OWVA 5DLTA 2XRGA 3ISMA 1G8TA 3NKOA 3WAWA 4B56A 2XR9A 5KXAA 4QGOA 1QAEA 4ZG6A 4GTZA 5DLWA 5GKCA 3NKMA 4QH0A 1QL0A 3NKPA 3S5BA 3NKRA 5LQQA 3NKQA 3WAXA 4GTWA 5DLVA 5L0EA 3WAVA 4E3YA 1SMNA 3WAYA 4ZGAA 5IJQA 2O3BA 4A1NA 5L0BA 1ZM8A 3NKNA 5L0KA 5INHA 5GKPA 2XH3A 4GTXA 4GTYA
chains in the Genus database with same CATH topology
2XGRA 4QN0A 4ZG7A 4ZG9A 5HRTA 5IJSA 5LIAA 3OWVA 5DLTA 2XRGA 3ISMA 1G8TA 3NKOA 3WAWA 4B56A 2XR9A 5KXAA 4QGOA 1QAEA 4ZG6A 4GTZA 5DLWA 5GKCA 3NKMA 4QH0A 1QL0A 3NKPA 3S5BA 3NKRA 5LQQA 3NKQA 3WAXA 4GTWA 5DLVA 5L0EA 3WAVA 4E3YA 1SMNA 3WAYA 4ZGAA 5IJQA 2O3BA 4A1NA 5L0BA 1ZM8A 3NKNA 5L0KA 5INHA 5GKPA 2XH3A 4GTXA 4GTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XGR A;  4QN0 A;  4ZG7 A;  4ZG9 A;  5HRT A;  5IJS A;  5LIA A;  3OWV A;  5DLT A;  2XRG A;  3ISM A;  1G8T A;  3NKO A;  3WAW A;  4B56 A;  2XR9 A;  5KXA A;  4QGO A;  1QAE A;  4ZG6 A;  4GTZ A;  5DLW A;  5GKC A;  3NKM A;  4QH0 A;  1QL0 A;  3NKP A;  3S5B A;  3NKR A;  5LQQ A;  3NKQ A;  3WAX A;  4GTW A;  5DLV A;  5L0E A;  3WAV A;  4E3Y A;  1SMN A;  3WAY A;  4ZGA A;  5IJQ A;  2O3B A;  4A1N A;  5L0B A;  1ZM8 A;  3NKN A;  5L0K A;  5INH A;  5GKP A;  2XH3 A;  4GTX A;  4GTY A; 
#chains in the Genus database with same CATH topology
 2XGR A;  4QN0 A;  4ZG7 A;  4ZG9 A;  5HRT A;  5IJS A;  5LIA A;  3OWV A;  5DLT A;  2XRG A;  3ISM A;  1G8T A;  3NKO A;  3WAW A;  4B56 A;  2XR9 A;  5KXA A;  4QGO A;  1QAE A;  4ZG6 A;  4GTZ A;  5DLW A;  5GKC A;  3NKM A;  4QH0 A;  1QL0 A;  3NKP A;  3S5B A;  3NKR A;  5LQQ A;  3NKQ A;  3WAX A;  4GTW A;  5DLV A;  5L0E A;  3WAV A;  4E3Y A;  1SMN A;  3WAY A;  4ZGA A;  5IJQ A;  2O3B A;  4A1N A;  5L0B A;  1ZM8 A;  3NKN A;  5L0K A;  5INH A;  5GKP A;  2XH3 A;  4GTX A;  4GTY A; 
#chains in the Genus database with same CATH homology
 2XGR A;  4QN0 A;  4ZG7 A;  4ZG9 A;  5HRT A;  5IJS A;  5LIA A;  3OWV A;  5DLT A;  2XRG A;  3ISM A;  1G8T A;  3NKO A;  3WAW A;  4B56 A;  2XR9 A;  5KXA A;  4QGO A;  1QAE A;  4ZG6 A;  4GTZ A;  5DLW A;  5GKC A;  3NKM A;  4QH0 A;  1QL0 A;  3NKP A;  3S5B A;  3NKR A;  5LQQ A;  3NKQ A;  3WAX A;  4GTW A;  5DLV A;  5L0E A;  3WAV A;  4E3Y A;  1SMN A;  3WAY A;  4ZGA A;  5IJQ A;  2O3B A;  4A1N A;  5L0B A;  1ZM8 A;  3NKN A;  5L0K A;  5INH A;  5GKP A;  2XH3 A;  4GTX A;  4GTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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