4A24A

Structural and functional analysis of the deaf-1 and bs69 mynd domains
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
47
structure length
47
Chain Sequence
GAMEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
source organism Homo sapiens
publication title Structural and Functional Analysis of the Deaf-1 and Bs69 Mynd Domains.
pubmed doi rcsb
molecule keywords DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG
total genus 10
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2011-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01753 zf-MYND MYND finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.180 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 4a24A00
2ODDA 5EX0A 3OXGA 3OXFA 3MEKA 3OXLA 4A24A 3QWPA 2JW6A 5HQ8A 3RU0A 2OD1A 5CCMA 3PDNA 5HI7A 5EX3A 5CCLA
chains in the Genus database with same CATH superfamily
2CWFA 2M5XA 2N52A 2QQCA 3UFFA 1KBFA 2V1CA 2VRWB 1HDLA 1Y1CA 2RIJA 3E59A 1SGDI 4WP4A 4A24A 1PPFI 2SGDI 3SGQI 1FAQA 1WTJA 5HI7A 1CT0I 1TOTA 2SGFI 3GOXA 2L7XA 2X52A 1R79A 1IW4A 2JXDA 2KMRA 2ORWA 2ROWA 3QTLD 1K7UA 1CGII 2WVJA 2NU1I 1W4RA 2FNFX 3UGLA 1M8BA 2KMQA 1CT2I 1IY5A 4DNCA 1Q9BA 3R5AA 1TGSI 2DIPA 3VDPA 1TBRR 1KMAA 1SGRI 2RC4A 1K7TA 5E3RA 2LB7A 1SGPI 2LEOA 2B8TA 3TJQA 3HH2C 1RFHA 2KCXA 4OVOA 1OYVI 2YQPA 3VE5A 3SEKC 1V1HA 2B0UC 2GKRI 3RU0A 1AN1I 1WKXA 3UEYA 1BUSA 2KMPA 1CHOI 2ORVA 4UXIA 1H0ZA 1MJBA 2W0TA 2A20A 2GKTI 2P6AC 2QQ0A 3CXLA 2WGCA 2QQDA 3UOEA 1UVGA 1WGCA 5J8FA 5E3QA 2N17A 1S20A 2YUUA 1PTQA 2XRCA 1CGJI 1X74A 4MPIA 3TO9A 2SGQI 2ERWA 1HJAI 1CE3A 1XX6A 4JCVE 1SGNI 1HPTA 5HQ8A 1P9GA 2DB6A 2L8EA 3PDNA 1Y8FA 4GI3C 3KY9A 2ODDA 4E1PA 2K9HA 5J8CA 3OXLA 1NXUA 2Y0MA 2J9RA 4UXJA 1OMUA 3UEJA 2E73A 2NU0I 3E2IA 2SGEI 1TURA 2BUSA 2NU4I 3UGIA 2ENZA 3OXGA 2PQ8A 1UHAA 1ULNA 1R0RI 1MJAA 2OVOA 2UZ3A 1KBEA 5CCMA 1YU6C 1TBQR 4UXHA 3D00A 2F3CI 1HEVA 3BJIA 3TO6A 1W3SA 7WGAA 1M8CA 2GVIA 1CSOI 1OVOA 1Z2IA 2E5RA 2ELIA 1LR9A 4B6DA 2GIVA 1K7VA 3UGDA 1SGQI 1Y1BA 3TOAA 4HGUA 1TIHA 1BMOA 2J87A 3SGBI 2X3TA 2JZMA 3MEKA 1TUSA 3FSXA 5FUVA 1LR7A 1MJ9A 2QPOA 2QQEA 1DS2I 2WCYA 4E1RA 1PJUA 1MT1A 1PTRA 2OD1A 1U5KA 1ULKA 1VDDA 1WGTA 1X4SA 2NU2I 5EX3A 3OL0A 5FUYA 1V1IA 2JYYA 2DKVA 3TO7A 2JW6A 1XBTA 4AMLA 5FUWA 1UVFA 1FARA 1Z7KB 2V53A 2N71A 5EX0A 1DS3I 3R5CA 1YTPA 2NU3I 1XA6A 3OVOA 3B4VC 3QAHA 1FY7A 2CWGA 2OU2A 5CCLA 1NUBA 1OMTA 1PCEA 2JA1A 2ARPF 1SGYI 2GKVA 1P9ZA 2LUYA 2N1AB 2V1CC 5DAEA 2UVOA 9WGAA 4L9MA 5FUXA 3FC3A 1TBNA 1LR8A 1FYBA 3TOBA 3R5DA 3FSYA 3QWPA 2CJSC 2OZUA 2CWHA 3R5BA 5E3PA 1IY6A 5JHWC 4FKDA 1SGEI 1UUCA 3OXFA 2ENNA 2SGPI 1N13A 4SGBI 1TBOA 2KMOA 1CT4I 1ULMA 3VDUA
chains in the Genus database with same CATH topology
2M5XA 2N52A 2QQCA 3UFFA 1KBFA 2V1CA 2VRWB 1HDLA 1Y1CA 3E59A 4A24A 1SGDI 1PPFI 2SGDI 3SGQI 1FAQA 5HI7A 1CT0I 1TOTA 2SGFI 3GOXA 2L7XA 1IW4A 1R79A 2JXDA 2KMRA 2ORWA 2ROWA 3QTLD 1CGII 2WVJA 2NU1I 1W4RA 2FNFX 3UGLA 1M8BA 2KMQA 1CT2I 1IY5A 1TGSI 2DIPA 3VDPA 1TBRR 1KMAA 1SGRI 1SGPI 2LEOA 2B8TA 3TJQA 3HH2C 1RFHA 2KCXA 4OVOA 1OYVI 2YQPA 3VE5A 3SEKC 1V1HA 2B0UC 2GKRI 3RU0A 1AN1I 3UEYA 1BUSA 2KMPA 1CHOI 2ORVA 4UXIA 1H0ZA 2W0TA 2A20A 2GKTI 2P6AC 2QQ0A 3CXLA 2QQDA 1UVGA 2N17A 2YUUA 1PTQA 2XRCA 1CGJI 1X74A 2SGQI 2ERWA 1HJAI 1CE3A 1XX6A 4JCVE 1SGNI 1HPTA 5HQ8A 2DB6A 2L8EA 3PDNA 1Y8FA 4GI3C 3KY9A 2ODDA 4E1PA 2K9HA 3OXLA 2J9RA 4UXJA 1OMUA 3UEJA 2E73A 2NU0I 3E2IA 2SGEI 1TURA 2BUSA 2NU4I 3UGIA 2ENZA 3OXGA 1R0RI 2OVOA 2UZ3A 1KBEA 5CCMA 1YU6C 1TBQR 4UXHA 3D00A 2F3CI 3BJIA 1W3SA 1M8CA 2GVIA 1CSOI 1OVOA 2E5RA 2ELIA 1LR9A 4B6DA 3UGDA 1SGQI 1Y1BA 4HGUA 1TIHA 1BMOA 2J87A 3SGBI 2JZMA 3MEKA 1TUSA 5FUVA 1LR7A 2QPOA 2QQEA 1DS2I 2WCYA 4E1RA 1PJUA 1MT1A 1PTRA 2OD1A 1U5KA 1VDDA 1X4SA 2NU2I 5EX3A 5FUYA 3OL0A 1V1IA 2JYYA 2JW6A 1XBTA 5FUWA 1UVFA 1FARA 1Z7KB 2V53A 2N71A 5EX0A 1DS3I 1YTPA 2NU3I 1XA6A 3OVOA 3B4VC 5CCLA 1NUBA 1OMTA 1PCEA 2JA1A 2ARPF 1SGYI 2GKVA 2LUYA 2N1AB 2V1CC 5DAEA 4L9MA 5FUXA 3FC3A 1TBNA 1LR8A 1FYBA 3QWPA 2CJSC 1IY6A 5JHWC 4FKDA 1SGEI 1UUCA 3OXFA 2SGPI 1N13A 4SGBI 1TBOA 2KMOA 1CT4I 2ENNA 3VDUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ODD A;  5EX0 A;  3OXG A;  3OXF A;  3MEK A;  3OXL A;  4A24 A;  3QWP A;  2JW6 A;  5HQ8 A;  3RU0 A;  2OD1 A;  5CCM A;  3PDN A;  5HI7 A;  5EX3 A;  5CCL A; 
#chains in the Genus database with same CATH topology
 2CWF A;  2M5X A;  2N52 A;  2QQC A;  3UFF A;  1KBF A;  2V1C A;  2VRW B;  1HDL A;  1Y1C A;  2RIJ A;  3E59 A;  1SGD I;  4WP4 A;  4A24 A;  1PPF I;  2SGD I;  3SGQ I;  1FAQ A;  1WTJ A;  5HI7 A;  1CT0 I;  1TOT A;  2SGF I;  3GOX A;  2L7X A;  2X52 A;  1R79 A;  1IW4 A;  2JXD A;  2KMR A;  2ORW A;  2ROW A;  3QTL D;  1K7U A;  1CGI I;  2WVJ A;  2NU1 I;  1W4R A;  2FNF X;  3UGL A;  1M8B A;  2KMQ A;  1CT2 I;  1IY5 A;  4DNC A;  1Q9B A;  3R5A A;  1TGS I;  2DIP A;  3VDP A;  1TBR R;  1KMA A;  1SGR I;  2RC4 A;  1K7T A;  5E3R A;  2LB7 A;  1SGP I;  2LEO A;  2B8T A;  3TJQ A;  3HH2 C;  1RFH A;  2KCX A;  4OVO A;  1OYV I;  2YQP A;  3VE5 A;  3SEK C;  1V1H A;  2B0U C;  2GKR I;  3RU0 A;  1AN1 I;  1WKX A;  3UEY A;  1BUS A;  2KMP A;  1CHO I;  2ORV A;  4UXI A;  1H0Z A;  1MJB A;  2W0T A;  2A20 A;  2GKT I;  2P6A C;  2QQ0 A;  3CXL A;  2WGC A;  2QQD A;  3UOE A;  1UVG A;  1WGC A;  5J8F A;  5E3Q A;  2N17 A;  1S20 A;  2YUU A;  1PTQ A;  2XRC A;  1CGJ I;  1X74 A;  4MPI A;  3TO9 A;  2SGQ I;  2ERW A;  1HJA I;  1CE3 A;  1XX6 A;  4JCV E;  1SGN I;  1HPT A;  5HQ8 A;  1P9G A;  2DB6 A;  2L8E A;  3PDN A;  1Y8F A;  4GI3 C;  3KY9 A;  2ODD A;  4E1P A;  2K9H A;  5J8C A;  3OXL A;  1NXU A;  2Y0M A;  2J9R A;  4UXJ A;  1OMU A;  3UEJ A;  2E73 A;  2NU0 I;  3E2I A;  2SGE I;  1TUR A;  2BUS A;  2NU4 I;  3UGI A;  2ENZ A;  3OXG A;  2PQ8 A;  1UHA A;  1ULN A;  1R0R I;  1MJA A;  2OVO A;  2UZ3 A;  1KBE A;  5CCM A;  1YU6 C;  1TBQ R;  4UXH A;  3D00 A;  2F3C I;  1HEV A;  3BJI A;  3TO6 A;  1W3S A;  7WGA A;  1M8C A;  2GVI A;  1CSO I;  1OVO A;  1Z2I A;  2E5R A;  2ELI A;  1LR9 A;  4B6D A;  2GIV A;  1K7V A;  3UGD A;  1SGQ I;  1Y1B A;  3TOA A;  4HGU A;  1TIH A;  1BMO A;  2J87 A;  3SGB I;  2X3T A;  2JZM A;  3MEK A;  1TUS A;  3FSX A;  5FUV A;  1LR7 A;  1MJ9 A;  2QPO A;  2QQE A;  1DS2 I;  2WCY A;  4E1R A;  1PJU A;  1MT1 A;  1PTR A;  2OD1 A;  1U5K A;  1ULK A;  1VDD A;  1WGT A;  1X4S A;  2NU2 I;  5EX3 A;  3OL0 A;  5FUY A;  1V1I A;  2JYY A;  2DKV A;  3TO7 A;  2JW6 A;  1XBT A;  4AML A;  5FUW A;  1UVF A;  1FAR A;  1Z7K B;  2V53 A;  2N71 A;  5EX0 A;  1DS3 I;  3R5C A;  1YTP A;  2NU3 I;  1XA6 A;  3OVO A;  3B4V C;  3QAH A;  1FY7 A;  2CWG A;  2OU2 A;  5CCL A;  1NUB A;  1OMT A;  1PCE A;  2JA1 A;  2ARP F;  1SGY I;  2GKV A;  1P9Z A;  2LUY A;  2N1A B;  2V1C C;  5DAE A;  2UVO A;  9WGA A;  4L9M A;  5FUX A;  3FC3 A;  1TBN A;  1LR8 A;  1FYB A;  3TOB A;  3R5D A;  3FSY A;  3QWP A;  2CJS C;  2OZU A;  2CWH A;  3R5B A;  5E3P A;  1IY6 A;  5JHW C;  4FKD A;  1SGE I;  1UUC A;  3OXF A;  2ENN A;  2SGP I;  1N13 A;  4SGB I;  1TBO A;  2KMO A;  1CT4 I;  1ULM A;  3VDU A; 
#chains in the Genus database with same CATH homology
 2M5X A;  2N52 A;  2QQC A;  3UFF A;  1KBF A;  2V1C A;  2VRW B;  1HDL A;  1Y1C A;  3E59 A;  4A24 A;  1SGD I;  1PPF I;  2SGD I;  3SGQ I;  1FAQ A;  5HI7 A;  1CT0 I;  1TOT A;  2SGF I;  3GOX A;  2L7X A;  1IW4 A;  1R79 A;  2JXD A;  2KMR A;  2ORW A;  2ROW A;  3QTL D;  1CGI I;  2WVJ A;  2NU1 I;  1W4R A;  2FNF X;  3UGL A;  1M8B A;  2KMQ A;  1CT2 I;  1IY5 A;  1TGS I;  2DIP A;  3VDP A;  1TBR R;  1KMA A;  1SGR I;  1SGP I;  2LEO A;  2B8T A;  3TJQ A;  3HH2 C;  1RFH A;  2KCX A;  4OVO A;  1OYV I;  2YQP A;  3VE5 A;  3SEK C;  1V1H A;  2B0U C;  2GKR I;  3RU0 A;  1AN1 I;  3UEY A;  1BUS A;  2KMP A;  1CHO I;  2ORV A;  4UXI A;  1H0Z A;  2W0T A;  2A20 A;  2GKT I;  2P6A C;  2QQ0 A;  3CXL A;  2QQD A;  1UVG A;  2N17 A;  2YUU A;  1PTQ A;  2XRC A;  1CGJ I;  1X74 A;  2SGQ I;  2ERW A;  1HJA I;  1CE3 A;  1XX6 A;  4JCV E;  1SGN I;  1HPT A;  5HQ8 A;  2DB6 A;  2L8E A;  3PDN A;  1Y8F A;  4GI3 C;  3KY9 A;  2ODD A;  4E1P A;  2K9H A;  3OXL A;  2J9R A;  4UXJ A;  1OMU A;  3UEJ A;  2E73 A;  2NU0 I;  3E2I A;  2SGE I;  1TUR A;  2BUS A;  2NU4 I;  3UGI A;  2ENZ A;  3OXG A;  1R0R I;  2OVO A;  2UZ3 A;  1KBE A;  5CCM A;  1YU6 C;  1TBQ R;  4UXH A;  3D00 A;  2F3C I;  3BJI A;  1W3S A;  1M8C A;  2GVI A;  1CSO I;  1OVO A;  2E5R A;  2ELI A;  1LR9 A;  4B6D A;  3UGD A;  1SGQ I;  1Y1B A;  4HGU A;  1TIH A;  1BMO A;  2J87 A;  3SGB I;  2JZM A;  3MEK A;  1TUS A;  5FUV A;  1LR7 A;  2QPO A;  2QQE A;  1DS2 I;  2WCY A;  4E1R A;  1PJU A;  1MT1 A;  1PTR A;  2OD1 A;  1U5K A;  1VDD A;  1X4S A;  2NU2 I;  5EX3 A;  5FUY A;  3OL0 A;  1V1I A;  2JYY A;  2JW6 A;  1XBT A;  5FUW A;  1UVF A;  1FAR A;  1Z7K B;  2V53 A;  2N71 A;  5EX0 A;  1DS3 I;  1YTP A;  2NU3 I;  1XA6 A;  3OVO A;  3B4V C;  5CCL A;  1NUB A;  1OMT A;  1PCE A;  2JA1 A;  2ARP F;  1SGY I;  2GKV A;  2LUY A;  2N1A B;  2V1C C;  5DAE A;  4L9M A;  5FUX A;  3FC3 A;  1TBN A;  1LR8 A;  1FYB A;  3QWP A;  2CJS C;  1IY6 A;  5JHW C;  4FKD A;  1SGE I;  1UUC A;  3OXF A;  2SGP I;  1N13 A;  4SGB I;  1TBO A;  2KMO A;  1CT4 I;  2ENN A;  3VDU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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