4A24A

Structural and functional analysis of the deaf-1 and bs69 mynd domains
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
47
structure length
47
Chain Sequence
b'GAMEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural and Functional Analysis of the Deaf-1 and Bs69 Mynd Domains.
pubmed doi rcsb
molecule keywords DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG
source organism Homo sapiens
molecule tags Transcription
total genus 10
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2011-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01753 zf-MYND MYND finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.180 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 4a24A00
3RU0A 3QWPA 2ODDA 3MEKA 5EX0A 3OXLA 3OXFA 5HQ8A 5EX3A 5HI7A 2JW6A 3PDNA 2OD1A 4A24A 3OXGA 5CCLA 5CCMA
chains in the Genus database with same CATH superfamily
2GKTI 1CE3A 1HEVA 1KMAA 3VDUA 1HJAI 2RC4A 3HH2C 1SGNI 4AMLA 2ERWA 4L9MA 4A24A 2P6AC 2L8EA 2LUYA 1SGDI 2Y0MA 1PTRA 3UGIA 2GVIA 2NU0I 1LR8A 1R79A 2E5RA 2ENZA 2KMRA 2KMOA 2X3TA 4UXIA 3VDPA 1LR7A 3VE5A 1IY6A 1UUCA 1WKXA 1OYVI 3OVOA 4UXHA 1MJAA 2N1AB 5FUWA 5DAEA 1NUBA 5J8CA 3FSYA 2SGEI 1TBNA 1V1IA 2J87A 2XRCA 3R5DA 1IW4A 1FAQA 2SGFI 1FY7A 2CWGA 2LB7A 1BUSA 4GI3C 3TOAA 1CT0I 1TOTA 1TBRR 2VRWB 2NU3I 4WP4A 5FUVA 3UEJA 1Y1CA 1UVGA 1CGII 3UGDA 2DKVA 2F3CI 3QWPA 2ODDA 4B6DA 2V1CA 1WGTA 2RIJA 1CT2I 1CT4I 1Z7KB 2OU2A 1S20A 4SGBI 2JW6A 4JCVE 1W3SA 2CJSC 2ELIA 5CCLA 3D00A 3UGLA 1U5KA 1H0ZA 2JA1A 2K9HA 2JXDA 1V1HA 1FARA 1WGCA 2ENNA 3SGQI 2FNFX 2N71A 1RFHA 1TURA 2OD1A 3TO6A 5HQ8A 5FUXA 3GOXA 2QQDA 2GKVA 3OXFA 1HDLA 3QAHA 1YTPA 3QTLD 1ULKA 9WGAA 4E1RA 4FKDA 1CHOI 3UEYA 1X4SA 2DIPA 1R0RI 1OVOA 3TO9A 5EX0A 1W4RA 3UFFA 3R5AA 1ULMA 3TOBA 1NXUA 5JHWC 1SGRI 1SGQI 5FUYA 1P9ZA 3E59A 1OMUA 7WGAA 1MJ9A 5E3PA 1BMOA 3R5BA 1SGEI 3OL0A 2SGDI 1IY5A 3UOEA 2QQEA 3SGBI 3PDNA 1X74A 2OVOA 1PCEA 1K7TA 2J9RA 2BUSA 5J8FA 2LEOA 1CGJI 1M8CA 2ROWA 2WCYA 3E2IA 2A20A 1CSOI 4HGUA 1TBQR 2PQ8A 1PJUA 5EX3A 3BJIA 1K7UA 2WVJA 1TUSA 1PTQA 1WTJA 2SGPI 2GIVA 5E3QA 3TJQA 4DNCA 3KY9A 1Z2IA 1MJBA 1MT1A 1HPTA 1SGPI 2JYYA 5CCMA 1VDDA 2CWHA 1M8BA 2NU4I 1TIHA 2NU2I 2KMQA 2WGCA 1TGSI 1FYBA 2KCXA 1DS2I 1P9GA 5HI7A 4MPIA 3FSXA 3OXLA 2QPOA 1K7VA 2JZMA 3CXLA 1ULNA 3TO7A 4E1PA 1LR9A 5E3RA 1N13A 4UXJA 1TBOA 1Y1BA 2GKRI 2M5XA 2QQ0A 2V1CC 2SGQI 2YQPA 2CWFA 1DS3I 2KMPA 2N17A 2ORVA 3R5CA 1Y8FA 2N52A 2B0UC 2OZUA 2V53A 1SGYI 3OXGA 4OVOA 2B8TA 2QQCA 2X52A 2DB6A 2ARPF 2L7XA 1UVFA 2UVOA 1XX6A 2W0TA 1XA6A 3FC3A 1Q9BA 3RU0A 1XBTA 2NU1I 3MEKA 1KBFA 3SEKC 3B4VC 1YU6C 1AN1I 2E73A 2ORWA 2YUUA 1UHAA 1OMTA 2UZ3A 1PPFI 1KBEA
chains in the Genus database with same CATH topology
2GKTI 1CE3A 1KMAA 3VDUA 1HJAI 3HH2C 1SGNI 2ERWA 4L9MA 4A24A 2P6AC 2L8EA 2LUYA 1SGDI 3UGIA 1PTRA 2GVIA 2NU0I 1LR8A 1R79A 2E5RA 2ENZA 2KMRA 2KMOA 4UXIA 3VDPA 1LR7A 3VE5A 1IY6A 1UUCA 1OYVI 3OVOA 4UXHA 5FUWA 2N1AB 5DAEA 1NUBA 2SGEI 1TBNA 1V1IA 2J87A 2XRCA 1IW4A 1FAQA 2SGFI 4GI3C 1CT0I 1TOTA 1TBRR 2VRWB 2NU3I 5FUVA 3UEJA 3UGDA 1Y1CA 1UVGA 1CGII 2F3CI 3QWPA 2ODDA 4B6DA 2V1CA 1CT2I 1CT4I 1Z7KB 4SGBI 2JW6A 4JCVE 1W3SA 2CJSC 2ELIA 5CCLA 3D00A 3UGLA 1U5KA 1H0ZA 2JA1A 2K9HA 2JXDA 1V1HA 1FARA 2ENNA 3SGQI 2FNFX 2N71A 1RFHA 1TURA 2OD1A 5HQ8A 5FUXA 3GOXA 2QQDA 2GKVA 3OXFA 1HDLA 1YTPA 3QTLD 4E1RA 4FKDA 1CHOI 3UEYA 1X4SA 2DIPA 1R0RI 1OVOA 3UFFA 5EX0A 1W4RA 5JHWC 1SGRI 1SGQI 5FUYA 3E59A 1OMUA 1BMOA 1SGEI 3OL0A 2SGDI 1IY5A 2QQEA 3SGBI 3PDNA 1X74A 2OVOA 1PCEA 2J9RA 2BUSA 2LEOA 1CGJI 1M8CA 2ROWA 2WCYA 3E2IA 2A20A 1CSOI 4HGUA 1TBQR 1PJUA 5EX3A 3BJIA 2WVJA 1TUSA 1PTQA 2SGPI 3TJQA 3KY9A 1MT1A 1HPTA 1SGPI 2JYYA 5CCMA 1VDDA 2NU4I 1M8BA 1TIHA 2NU2I 2KMQA 1FYBA 1TGSI 2KCXA 1DS2I 5HI7A 3OXLA 2QPOA 3CXLA 2JZMA 4E1PA 1LR9A 1N13A 4UXJA 1TBOA 1Y1BA 2GKRI 2M5XA 2QQ0A 2V1CC 2SGQI 2YQPA 1DS3I 2KMPA 2N17A 2ORVA 1Y8FA 2N52A 2B0UC 2V53A 4OVOA 1SGYI 3OXGA 1BUSA 2B8TA 2QQCA 2DB6A 2ARPF 2L7XA 1UVFA 1XX6A 2W0TA 1XA6A 3FC3A 3RU0A 1XBTA 2NU1I 3MEKA 1KBFA 3SEKC 3B4VC 1YU6C 1AN1I 2E73A 2ORWA 2YUUA 1OMTA 2UZ3A 1PPFI 1KBEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RU0 A;  3QWP A;  2ODD A;  3MEK A;  5EX0 A;  3OXL A;  3OXF A;  5HQ8 A;  5EX3 A;  5HI7 A;  2JW6 A;  3PDN A;  2OD1 A;  4A24 A;  3OXG A;  5CCL A;  5CCM A; 
#chains in the Genus database with same CATH topology
 2GKT I;  1CE3 A;  1HEV A;  1KMA A;  3VDU A;  1HJA I;  2RC4 A;  3HH2 C;  1SGN I;  4AML A;  2ERW A;  4L9M A;  4A24 A;  2P6A C;  2L8E A;  2LUY A;  1SGD I;  2Y0M A;  1PTR A;  3UGI A;  2GVI A;  2NU0 I;  1LR8 A;  1R79 A;  2E5R A;  2ENZ A;  2KMR A;  2KMO A;  2X3T A;  4UXI A;  3VDP A;  1LR7 A;  3VE5 A;  1IY6 A;  1UUC A;  1WKX A;  1OYV I;  3OVO A;  4UXH A;  1MJA A;  2N1A B;  5FUW A;  5DAE A;  1NUB A;  5J8C A;  3FSY A;  2SGE I;  1TBN A;  1V1I A;  2J87 A;  2XRC A;  3R5D A;  1IW4 A;  1FAQ A;  2SGF I;  1FY7 A;  2CWG A;  2LB7 A;  1BUS A;  4GI3 C;  3TOA A;  1CT0 I;  1TOT A;  1TBR R;  2VRW B;  2NU3 I;  4WP4 A;  5FUV A;  3UEJ A;  1Y1C A;  1UVG A;  1CGI I;  3UGD A;  2DKV A;  2F3C I;  3QWP A;  2ODD A;  4B6D A;  2V1C A;  1WGT A;  2RIJ A;  1CT2 I;  1CT4 I;  1Z7K B;  2OU2 A;  1S20 A;  4SGB I;  2JW6 A;  4JCV E;  1W3S A;  2CJS C;  2ELI A;  5CCL A;  3D00 A;  3UGL A;  1U5K A;  1H0Z A;  2JA1 A;  2K9H A;  2JXD A;  1V1H A;  1FAR A;  1WGC A;  2ENN A;  3SGQ I;  2FNF X;  2N71 A;  1RFH A;  1TUR A;  2OD1 A;  3TO6 A;  5HQ8 A;  5FUX A;  3GOX A;  2QQD A;  2GKV A;  3OXF A;  1HDL A;  3QAH A;  1YTP A;  3QTL D;  1ULK A;  9WGA A;  4E1R A;  4FKD A;  1CHO I;  3UEY A;  1X4S A;  2DIP A;  1R0R I;  1OVO A;  3TO9 A;  5EX0 A;  1W4R A;  3UFF A;  3R5A A;  1ULM A;  3TOB A;  1NXU A;  5JHW C;  1SGR I;  1SGQ I;  5FUY A;  1P9Z A;  3E59 A;  1OMU A;  7WGA A;  1MJ9 A;  5E3P A;  1BMO A;  3R5B A;  1SGE I;  3OL0 A;  2SGD I;  1IY5 A;  3UOE A;  2QQE A;  3SGB I;  3PDN A;  1X74 A;  2OVO A;  1PCE A;  1K7T A;  2J9R A;  2BUS A;  5J8F A;  2LEO A;  1CGJ I;  1M8C A;  2ROW A;  2WCY A;  3E2I A;  2A20 A;  1CSO I;  4HGU A;  1TBQ R;  2PQ8 A;  1PJU A;  5EX3 A;  3BJI A;  1K7U A;  2WVJ A;  1TUS A;  1PTQ A;  1WTJ A;  2SGP I;  2GIV A;  5E3Q A;  3TJQ A;  4DNC A;  3KY9 A;  1Z2I A;  1MJB A;  1MT1 A;  1HPT A;  1SGP I;  2JYY A;  5CCM A;  1VDD A;  2CWH A;  1M8B A;  2NU4 I;  1TIH A;  2NU2 I;  2KMQ A;  2WGC A;  1TGS I;  1FYB A;  2KCX A;  1DS2 I;  1P9G A;  5HI7 A;  4MPI A;  3FSX A;  3OXL A;  2QPO A;  1K7V A;  2JZM A;  3CXL A;  1ULN A;  3TO7 A;  4E1P A;  1LR9 A;  5E3R A;  1N13 A;  4UXJ A;  1TBO A;  1Y1B A;  2GKR I;  2M5X A;  2QQ0 A;  2V1C C;  2SGQ I;  2YQP A;  2CWF A;  1DS3 I;  2KMP A;  2N17 A;  2ORV A;  3R5C A;  1Y8F A;  2N52 A;  2B0U C;  2OZU A;  2V53 A;  1SGY I;  3OXG A;  4OVO A;  2B8T A;  2QQC A;  2X52 A;  2DB6 A;  2ARP F;  2L7X A;  1UVF A;  2UVO A;  1XX6 A;  2W0T A;  1XA6 A;  3FC3 A;  1Q9B A;  3RU0 A;  1XBT A;  2NU1 I;  3MEK A;  1KBF A;  3SEK C;  3B4V C;  1YU6 C;  1AN1 I;  2E73 A;  2ORW A;  2YUU A;  1UHA A;  1OMT A;  2UZ3 A;  1PPF I;  1KBE A; 
#chains in the Genus database with same CATH homology
 2GKT I;  1CE3 A;  1KMA A;  3VDU A;  1HJA I;  3HH2 C;  1SGN I;  2ERW A;  4L9M A;  4A24 A;  2P6A C;  2L8E A;  2LUY A;  1SGD I;  3UGI A;  1PTR A;  2GVI A;  2NU0 I;  1LR8 A;  1R79 A;  2E5R A;  2ENZ A;  2KMR A;  2KMO A;  4UXI A;  3VDP A;  1LR7 A;  3VE5 A;  1IY6 A;  1UUC A;  1OYV I;  3OVO A;  4UXH A;  5FUW A;  2N1A B;  5DAE A;  1NUB A;  2SGE I;  1TBN A;  1V1I A;  2J87 A;  2XRC A;  1IW4 A;  1FAQ A;  2SGF I;  4GI3 C;  1CT0 I;  1TOT A;  1TBR R;  2VRW B;  2NU3 I;  5FUV A;  3UEJ A;  3UGD A;  1Y1C A;  1UVG A;  1CGI I;  2F3C I;  3QWP A;  2ODD A;  4B6D A;  2V1C A;  1CT2 I;  1CT4 I;  1Z7K B;  4SGB I;  2JW6 A;  4JCV E;  1W3S A;  2CJS C;  2ELI A;  5CCL A;  3D00 A;  3UGL A;  1U5K A;  1H0Z A;  2JA1 A;  2K9H A;  2JXD A;  1V1H A;  1FAR A;  2ENN A;  3SGQ I;  2FNF X;  2N71 A;  1RFH A;  1TUR A;  2OD1 A;  5HQ8 A;  5FUX A;  3GOX A;  2QQD A;  2GKV A;  3OXF A;  1HDL A;  1YTP A;  3QTL D;  4E1R A;  4FKD A;  1CHO I;  3UEY A;  1X4S A;  2DIP A;  1R0R I;  1OVO A;  3UFF A;  5EX0 A;  1W4R A;  5JHW C;  1SGR I;  1SGQ I;  5FUY A;  3E59 A;  1OMU A;  1BMO A;  1SGE I;  3OL0 A;  2SGD I;  1IY5 A;  2QQE A;  3SGB I;  3PDN A;  1X74 A;  2OVO A;  1PCE A;  2J9R A;  2BUS A;  2LEO A;  1CGJ I;  1M8C A;  2ROW A;  2WCY A;  3E2I A;  2A20 A;  1CSO I;  4HGU A;  1TBQ R;  1PJU A;  5EX3 A;  3BJI A;  2WVJ A;  1TUS A;  1PTQ A;  2SGP I;  3TJQ A;  3KY9 A;  1MT1 A;  1HPT A;  1SGP I;  2JYY A;  5CCM A;  1VDD A;  2NU4 I;  1M8B A;  1TIH A;  2NU2 I;  2KMQ A;  1FYB A;  1TGS I;  2KCX A;  1DS2 I;  5HI7 A;  3OXL A;  2QPO A;  3CXL A;  2JZM A;  4E1P A;  1LR9 A;  1N13 A;  4UXJ A;  1TBO A;  1Y1B A;  2GKR I;  2M5X A;  2QQ0 A;  2V1C C;  2SGQ I;  2YQP A;  1DS3 I;  2KMP A;  2N17 A;  2ORV A;  1Y8F A;  2N52 A;  2B0U C;  2V53 A;  4OVO A;  1SGY I;  3OXG A;  1BUS A;  2B8T A;  2QQC A;  2DB6 A;  2ARP F;  2L7X A;  1UVF A;  1XX6 A;  2W0T A;  1XA6 A;  3FC3 A;  3RU0 A;  1XBT A;  2NU1 I;  3MEK A;  1KBF A;  3SEK C;  3B4V C;  1YU6 C;  1AN1 I;  2E73 A;  2ORW A;  2YUU A;  1OMT A;  2UZ3 A;  1PPF I;  1KBE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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