The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
251
|
sequence length |
791
|
structure length |
674
|
Chain Sequence |
MTADEKRSLQCYRRYIERSLNPVYVLGNMTDWLPDELRERIRKEEERGVSGAAALFLDAVLQLEARGWFRGMLDAMLAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGESVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLDNRLLIATSVVQCNLVVLYEYSGNVTKMIQVGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Structural Basis for the Activation of Innate Immune Pattern Recognition Receptor Rig-I by Viral RNA.
pubmed doi rcsb |
molecule tags |
Hydrolase
|
source organism |
Anas platyrhynchos
|
molecule keywords |
RETINOIC ACID INDUCIBLE PROTEIN I
|
total genus |
251
|
structure length |
674
|
sequence length |
791
|
chains with identical sequence |
B, D, E
|
ec nomenclature | |
pdb deposition date | 2011-09-28 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00270 | DEAD | DEAD/DEAH box helicase |
A | PF00271 | Helicase_C | Helicase conserved C-terminal domain |
A | PF16739 | CARD_2 | Caspase recruitment domain |
A | PF18119 | RIG-I_C | RIG-I receptor C-terminal domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | ||
Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | ||
Mainly Alpha | Up-down Bundle | phosphoenolpyruvate carboxylase, domain 3 | phosphoenolpyruvate carboxylase, domain 3 | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |