4AAEA

Crystal structure of the mutant d75n i-crei in complex with an altered target (the four central bases, 2nn region, are composed by agcg from 5' to 3')
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSNYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA ENDONUCLEASE I-CREI
publication title Non-Specific Protein-DNA Interactions Control I-Crei Target Binding and Cleavage.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 46
structure length 152
sequence length 152
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2011-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4aaeA00
1B24A 2VBJB 1EF0A 3QQYA 5A74A 3MIPA 1R7MA 2VBOA 2FLDA 2VBJA 3R7PA 2XE0B 1T9IA 5AKFA 4UN8A 4YISA 1P8KZ 5AKNA 1N3FA 1G9ZA 4UNCA 1JVAA 1UM2A 2DCHX 2XE0A 3E54A 4UN8G 4AAGA 2VBNB 2QOJZ 2O7MA 2VS8A 1U0DA 1U0CA 5A0MB 3EH8A 2VBNA 4Z1XA 4AQXA 3OOLA 2CW8A 5A0MA 4UN7A 2I3QA 5A0WA 4AAEA 1LWSA 3MXBB 4AQUA 4UN7G 4Z1ZA 4LOXA 1G9YA 5A78A 1LWTA 3HYJA 1N3EA 4UN9A 5AKMA 2I3PA 2CW7A 5E5SA 3MXAA 3HYIA 2VBLB 1M5XA 4UNBA 2VS7A 4AABA 1AF5A 4AAFA 5E63A 3MISA 2VBLA 3MX9A 1VDEA 3OORA 4YITA 1T9JA 4LQ0A 3C0XA 2EX5A 3UVFA 4AADA 4D6NA 3FD2A 5E67A 3MXBA 1DQ3A 2AB5A 4UT0A 1DFAA 4EFJA 3KO2A 3C0WA 5A72A 4UNAA 1BP7A 4YHXA 5AK9A 4D6OA 4UN9G 5A77A 4Z20A 1MOWA 2VBOB 5E5OA
chains in the Genus database with same CATH superfamily
1B24A 2VBJB 1EF0A 3QQYA 5A74A 3MIPA 1R7MA 2VBOA 2FLDA 2F4LA 2VBJA 3R7PA 2XE0B 1T9IA 5AKFA 4UN8A 4YISA 1P8KZ 5AKNA 1N3FA 1G9ZA 4UNCA 1JVAA 1UM2A 2DCHX 2XE0A 3E54A 4UN8G 4AAGA 2VBNB 2QOJZ 2O7MA 2VS8A 1U0DA 1U0CA 5A0MB 3EH8A 2VBNA 4Z1XA 4AQXA 3OOLA 2CW8A 5A0MA 4UN7A 2I3QA 5A0WA 4AAEA 1LWSA 3MXBB 4AQUA 4UN7G 4Z1ZA 4LOXA 1G9YA 5A78A 1LWTA 3HYJA 1N3EA 4UN9A 5AKMA 2I3PA 2CW7A 5E5SA 3MXAA 3HYIA 2VBLB 1M5XA 4UNBA 2VS7A 4AABA 1AF5A 4AAFA 5E63A 3MISA 2VBLA 3MX9A 1VDEA 3OORA 4YITA 1T9JA 4LQ0A 3C0XA 2EX5A 3UVFA 4AADA 4D6NA 3FD2A 5E67A 3MXBA 1DQ3A 2AB5A 4UT0A 1DFAA 4KZSA 4EFJA 3KO2A 3C0WA 5A72A 4UNAA 1BP7A 4YHXA 5AK9A 4D6OA 4UN9G 5A77A 4Z20A 1MOWA 2VBOB 5E5OA
chains in the Genus database with same CATH topology
1B24A 2VBJB 1EF0A 3QQYA 5A74A 3MIPA 1R7MA 2VBOA 2FLDA 2VBJA 3R7PA 2XE0B 1T9IA 5AKFA 4UN8A 4YISA 1P8KZ 5AKNA 1N3FA 1G9ZA 4UNCA 1JVAA 1UM2A 2DCHX 2XE0A 3E54A 4UN8G 4AAGA 2VBNB 2QOJZ 2O7MA 2VS8A 1U0DA 1U0CA 5A0MB 3EH8A 2VBNA 4Z1XA 4AQXA 3OOLA 2CW8A 5A0MA 4UN7A 2I3QA 5A0WA 4AAEA 1LWSA 3MXBB 4AQUA 4UN7G 4Z1ZA 4LOXA 1G9YA 5A78A 1LWTA 3HYJA 1N3EA 4UN9A 5AKMA 2I3PA 2CW7A 5E5SA 3MXAA 3HYIA 2VBLB 1M5XA 4UNBA 2VS7A 4AABA 1AF5A 4AAFA 5E63A 3MISA 2VBLA 3MX9A 1VDEA 3OORA 4YITA 1T9JA 4LQ0A 3C0XA 2EX5A 3UVFA 4AADA 4D6NA 3FD2A 5E67A 3MXBA 1DQ3A 2AB5A 4UT0A 1DFAA 4EFJA 3KO2A 3C0WA 5A72A 4UNAA 1BP7A 4YHXA 5AK9A 4D6OA 4UN9G 5A77A 4Z20A 1MOWA 2VBOB 5E5OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B24 A;  2VBJ B;  1EF0 A;  3QQY A;  5A74 A;  3MIP A;  1R7M A;  2VBO A;  2FLD A;  2VBJ A;  3R7P A;  2XE0 B;  1T9I A;  5AKF A;  4UN8 A;  4YIS A;  1P8K Z;  5AKN A;  1N3F A;  1G9Z A;  4UNC A;  1JVA A;  1UM2 A;  2DCH X;  2XE0 A;  3E54 A;  4UN8 G;  4AAG A;  2VBN B;  2QOJ Z;  2O7M A;  2VS8 A;  1U0D A;  1U0C A;  5A0M B;  3EH8 A;  2VBN A;  4Z1X A;  4AQX A;  3OOL A;  2CW8 A;  5A0M A;  4UN7 A;  2I3Q A;  5A0W A;  4AAE A;  1LWS A;  3MXB B;  4AQU A;  4UN7 G;  4Z1Z A;  4LOX A;  1G9Y A;  5A78 A;  1LWT A;  3HYJ A;  1N3E A;  4UN9 A;  5AKM A;  2I3P A;  2CW7 A;  5E5S A;  3MXA A;  3HYI A;  2VBL B;  1M5X A;  4UNB A;  2VS7 A;  4AAB A;  1AF5 A;  4AAF A;  5E63 A;  3MIS A;  2VBL A;  3MX9 A;  1VDE A;  3OOR A;  4YIT A;  1T9J A;  4LQ0 A;  3C0X A;  2EX5 A;  3UVF A;  4AAD A;  4D6N A;  3FD2 A;  5E67 A;  3MXB A;  1DQ3 A;  2AB5 A;  4UT0 A;  1DFA A;  4EFJ A;  3KO2 A;  3C0W A;  5A72 A;  4UNA A;  1BP7 A;  4YHX A;  5AK9 A;  4D6O A;  4UN9 G;  5A77 A;  4Z20 A;  1MOW A;  2VBO B;  5E5O A; 
#chains in the Genus database with same CATH topology
 1B24 A;  2VBJ B;  1EF0 A;  3QQY A;  5A74 A;  3MIP A;  1R7M A;  2VBO A;  2FLD A;  2F4L A;  2VBJ A;  3R7P A;  2XE0 B;  1T9I A;  5AKF A;  4UN8 A;  4YIS A;  1P8K Z;  5AKN A;  1N3F A;  1G9Z A;  4UNC A;  1JVA A;  1UM2 A;  2DCH X;  2XE0 A;  3E54 A;  4UN8 G;  4AAG A;  2VBN B;  2QOJ Z;  2O7M A;  2VS8 A;  1U0D A;  1U0C A;  5A0M B;  3EH8 A;  2VBN A;  4Z1X A;  4AQX A;  3OOL A;  2CW8 A;  5A0M A;  4UN7 A;  2I3Q A;  5A0W A;  4AAE A;  1LWS A;  3MXB B;  4AQU A;  4UN7 G;  4Z1Z A;  4LOX A;  1G9Y A;  5A78 A;  1LWT A;  3HYJ A;  1N3E A;  4UN9 A;  5AKM A;  2I3P A;  2CW7 A;  5E5S A;  3MXA A;  3HYI A;  2VBL B;  1M5X A;  4UNB A;  2VS7 A;  4AAB A;  1AF5 A;  4AAF A;  5E63 A;  3MIS A;  2VBL A;  3MX9 A;  1VDE A;  3OOR A;  4YIT A;  1T9J A;  4LQ0 A;  3C0X A;  2EX5 A;  3UVF A;  4AAD A;  4D6N A;  3FD2 A;  5E67 A;  3MXB A;  1DQ3 A;  2AB5 A;  4UT0 A;  1DFA A;  4KZS A;  4EFJ A;  3KO2 A;  3C0W A;  5A72 A;  4UNA A;  1BP7 A;  4YHX A;  5AK9 A;  4D6O A;  4UN9 G;  5A77 A;  4Z20 A;  1MOW A;  2VBO B;  5E5O A; 
#chains in the Genus database with same CATH homology
 1B24 A;  2VBJ B;  1EF0 A;  3QQY A;  5A74 A;  3MIP A;  1R7M A;  2VBO A;  2FLD A;  2VBJ A;  3R7P A;  2XE0 B;  1T9I A;  5AKF A;  4UN8 A;  4YIS A;  1P8K Z;  5AKN A;  1N3F A;  1G9Z A;  4UNC A;  1JVA A;  1UM2 A;  2DCH X;  2XE0 A;  3E54 A;  4UN8 G;  4AAG A;  2VBN B;  2QOJ Z;  2O7M A;  2VS8 A;  1U0D A;  1U0C A;  5A0M B;  3EH8 A;  2VBN A;  4Z1X A;  4AQX A;  3OOL A;  2CW8 A;  5A0M A;  4UN7 A;  2I3Q A;  5A0W A;  4AAE A;  1LWS A;  3MXB B;  4AQU A;  4UN7 G;  4Z1Z A;  4LOX A;  1G9Y A;  5A78 A;  1LWT A;  3HYJ A;  1N3E A;  4UN9 A;  5AKM A;  2I3P A;  2CW7 A;  5E5S A;  3MXA A;  3HYI A;  2VBL B;  1M5X A;  4UNB A;  2VS7 A;  4AAB A;  1AF5 A;  4AAF A;  5E63 A;  3MIS A;  2VBL A;  3MX9 A;  1VDE A;  3OOR A;  4YIT A;  1T9J A;  4LQ0 A;  3C0X A;  2EX5 A;  3UVF A;  4AAD A;  4D6N A;  3FD2 A;  5E67 A;  3MXB A;  1DQ3 A;  2AB5 A;  4UT0 A;  1DFA A;  4EFJ A;  3KO2 A;  3C0W A;  5A72 A;  4UNA A;  1BP7 A;  4YHX A;  5AK9 A;  4D6O A;  4UN9 G;  5A77 A;  4Z20 A;  1MOW A;  2VBO B;  5E5O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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