4AC7B

The crystal structure of sporosarcina pasteurii urease in complex with citrate
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
122
structure length
122
Chain Sequence
NYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELGYKGVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE SUBUNIT GAMMA
publication title The Crystal Structure of Sporosarcina Pasteurii Urease in a Complex with Citrate Provides New Hints for Inhibitor Design.
pubmed doi rcsb
total genus 28
structure length 122
sequence length 122
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2011-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 4ac7B00
1FWFB 2UBPB 4G7EB 4GOAA 1FWBB 4EP8B 4CEUB 1UBPB 5FSEB 1A5KB 5A6TB 1KRBB 1A5NB 1FWHB 4G7EA 4H9MA 1EJRB 1EJWB 5FSDB 4EPBB 1IE7B 1EJVB 1E9ZA 1A5LB 1FWJB 1S3TB 1KRCB 1FWIB 3QGAA 1EJXB 1EJUB 4EPEB 1KRAB 4EPDB 1FWDB 1FWAB 1EJSB 1FWGB 3UBPB 4GY7A 4Z42B 4CEXB 1FWEB 1E9YA 4UBPB 3LA4A 5G4HB 1A5OB 3QGKA 1A5MB 1EJTB 1EF2B 2KAUB 1FWCB 4AC7B
chains in the Genus database with same CATH superfamily
1FWFB 2UBPB 4G7EB 4GOAA 1FWBB 4EP8B 4CEUB 1UBPB 5FSEB 1A5KB 5A6TB 1KRBB 1A5NB 1FWHB 4G7EA 4H9MA 1EJRB 1EJWB 5FSDB 4EPBB 1IE7B 1EJVB 1E9ZA 1A5LB 1FWJB 1S3TB 1KRCB 1FWIB 3QGAA 1EJXB 1EJUB 4EPEB 1KRAB 4EPDB 1FWDB 1FWAB 1EJSB 1FWGB 3UBPB 4GY7A 4Z42B 4CEXB 1FWEB 1E9YA 4UBPB 3LA4A 5G4HB 1A5OB 3QGKA 1A5MB 1EJTB 1EF2B 2KAUB 1FWCB 4AC7B
chains in the Genus database with same CATH topology
1FWFB 2UBPB 4G7EB 4GOAA 1FWBB 4EP8B 4CEUB 1UBPB 5FSEB 1A5KB 5A6TB 1KRBB 1A5NB 1FWHB 4G7EA 4H9MA 1EJRB 1EJWB 5FSDB 4EPBB 1IE7B 1EJVB 1E9ZA 1A5LB 1FWJB 1S3TB 1KRCB 1FWIB 3QGAA 1EJXB 1EJUB 4EPEB 1KRAB 4EPDB 1FWDB 1FWAB 1EJSB 1FWGB 3UBPB 4GY7A 4Z42B 4CEXB 1FWEB 1E9YA 4UBPB 3LA4A 5G4HB 1A5OB 3QGKA 1A5MB 1EJTB 1EF2B 2KAUB 1FWCB 4AC7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FWF B;  2UBP B;  4G7E B;  4GOA A;  1FWB B;  4EP8 B;  4CEU B;  1UBP B;  5FSE B;  1A5K B;  5A6T B;  1KRB B;  1A5N B;  1FWH B;  4G7E A;  4H9M A;  1EJR B;  1EJW B;  5FSD B;  4EPB B;  1IE7 B;  1EJV B;  1E9Z A;  1A5L B;  1FWJ B;  1S3T B;  1KRC B;  1FWI B;  3QGA A;  1EJX B;  1EJU B;  4EPE B;  1KRA B;  4EPD B;  1FWD B;  1FWA B;  1EJS B;  1FWG B;  3UBP B;  4GY7 A;  4Z42 B;  4CEX B;  1FWE B;  1E9Y A;  4UBP B;  3LA4 A;  5G4H B;  1A5O B;  3QGK A;  1A5M B;  1EJT B;  1EF2 B;  2KAU B;  1FWC B;  4AC7 B; 
#chains in the Genus database with same CATH topology
 1FWF B;  2UBP B;  4G7E B;  4GOA A;  1FWB B;  4EP8 B;  4CEU B;  1UBP B;  5FSE B;  1A5K B;  5A6T B;  1KRB B;  1A5N B;  1FWH B;  4G7E A;  4H9M A;  1EJR B;  1EJW B;  5FSD B;  4EPB B;  1IE7 B;  1EJV B;  1E9Z A;  1A5L B;  1FWJ B;  1S3T B;  1KRC B;  1FWI B;  3QGA A;  1EJX B;  1EJU B;  4EPE B;  1KRA B;  4EPD B;  1FWD B;  1FWA B;  1EJS B;  1FWG B;  3UBP B;  4GY7 A;  4Z42 B;  4CEX B;  1FWE B;  1E9Y A;  4UBP B;  3LA4 A;  5G4H B;  1A5O B;  3QGK A;  1A5M B;  1EJT B;  1EF2 B;  2KAU B;  1FWC B;  4AC7 B; 
#chains in the Genus database with same CATH homology
 1FWF B;  2UBP B;  4G7E B;  4GOA A;  1FWB B;  4EP8 B;  4CEU B;  1UBP B;  5FSE B;  1A5K B;  5A6T B;  1KRB B;  1A5N B;  1FWH B;  4G7E A;  4H9M A;  1EJR B;  1EJW B;  5FSD B;  4EPB B;  1IE7 B;  1EJV B;  1E9Z A;  1A5L B;  1FWJ B;  1S3T B;  1KRC B;  1FWI B;  3QGA A;  1EJX B;  1EJU B;  4EPE B;  1KRA B;  4EPD B;  1FWD B;  1FWA B;  1EJS B;  1FWG B;  3UBP B;  4GY7 A;  4Z42 B;  4CEX B;  1FWE B;  1E9Y A;  4UBP B;  3LA4 A;  5G4H B;  1A5O B;  3QGK A;  1A5M B;  1EJT B;  1EF2 B;  2KAU B;  1FWC B;  4AC7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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