4AFKA

In meso structure of alginate transporter, alge, from pseudomonas aeruginosa, pao1
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
454
structure length
430
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
total genus 131
structure length 430
sequence length 454
ec nomenclature
pdb deposition date 2012-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4afkA00
4XNKA 4XNLA 4AZLA 5D5DA 5IYUA 4AFKA 3RBHA 4B61A
chains in the Genus database with same CATH superfamily
3DA3A 1P4TA 1YS5A 4AKRA 3V8UA 1IZNA 4O4UA 2R4OA 4AKRB 4C69X 1IZNB 4O4XA 2XG6A 1MM4A 4FRXA 4D5UA 3POXA 2LHFA 2XTQA 4N58A 4JCHA 4F4BA 4U9CA 3LK41 4LSHA 3AA6A 2YNKA 4AKMA 1ZHZA 3AA6B 3NSGA 3PGSA 5T5FA 6PRNA 2JMMA 1MM5A 2PRNA 2KXPB 2Y2XA 4KR8A 1PRNA 4AYEC 2J1NA 1PHOA 4FZLA 4LSFA 2LFUA 2KZ7A 2Y7SA 3T24A 2KZ7B 2W80C 5GTIO 5AFUL 4GF4A 1GFNA 5DL5A 4RJWA 4C00A 4C4VB 4FQEA 5D5DA 3AA1A 3WI5A 2IWWA 5G39A 1MPFA 5GV0A 3JTYA 1BXWA 2N2MA 4PUXA 5EE2A 5G26A 1Q9GA 3PGRA 4XNKA 3O0EA 4XNLA 2FGRA 4AZLA 1ZHWA 3BRYA 3KVDD 3QRAA 4N74A 4RLBA 5DL6A 3SYBA 5FVNA 3RBHA 2WVPA 3POUA 1BT9A 2GE4A 2R8AA 5KAFO 1HXXA 5JDPA 4G75A 2QTKA 4RL9A 5AFUK 2M07A 2XE2A 4E1TA 5DL8A 5DL7A 2KXPA 3DWOX 3TZGA 2WJQA 3BRZA 4AYDC 4QQ1A 2N2LA 2XE5A 5PRNA 5B5EO 3DZMA 3KZIO 1GFPA 3LK42 3PRNA 4KRAA 4FT6A 2R88A 3HOLA 4GHBA 5G38A 4FESA 3SY9A 4BUMX 2W81C 1GFQA 4LSEA 3AA0B 4AYNA 4C4VA 5ADXL 4FUVA 3VE1A 4RLCA 2R4LA 5H2FO 1ZHXA 1G90A 3VZTX 3T20A 1OPFA 1H6S1 2ODJA 3LK2B 5KAIO 3PQUA 3VY9X 1OSMA 1ZHTA 4JFBA 2Y0HA 4LSIA 3SY7A 4AYID 1E54A 4O3WA 1HXTA 2Y0LA 4PJ0O 4UB6O 3G7GA 4N75A 3AAEB 3WU2O 2F1TA 2R4NA 2YPVA 3SZVA 3VZUX 2XMXA 3POQA 4D65A 2XE3A 2F1CX 4IL6O 4O3XB 4O49A 2KDYA 3DA4A 5ADXK 4PR7A 2MHLA 4K3BA 5E79O 4FMSA 1ORMA 1S5LO 2K0LA 3T0SA 4AFKA 4RJXA 1ZHYA 3SZDA 3UU2A 2JQYA 3UPGA 5GTHO 3PQSA 3BS0A 2X9KA 3LK3B 2X27X 3AA0A 3HOEA 3HW9A 5IYUA 3C5OA 2R89A 4FSPA 3AAAB 3SYSA 4CTDA 4O3ZA 3NJTA 1GFOA 3A0BO 3WI4A 4N59A 3LK2A 2ZLDA 1QJ8A 7PRNA 3AA7A 2AXTO 4AYMC 2XTRA 2ERVA 3AA7B 1T16A 3A0HO 2ZFGA 3EMNX 1QJ9A 5TISO 4FZMA 8PRNA 3AAEA 3FYXA 4K3CA 2F1VA 2R4PA 4Z3TA 4G76A 1THQA 2IWVA 3VY8X 2KC0A 2O4VA 2J4UP 2PORA 4AUIA 3HWBA 1GFMA 3PF1A 3K19A 4O3YA 3GP6A 4D64A 3DWNA 3UAQA 2MNHA 2Y0KA 3QRCA 3PORA 4FZNA 2OMFA 3JCUO 1Q9FA 4FRTA 4GCSA 4KR4A 2FGQX 5G3AA 3VE2A 4B61A 4UB8O 1BH3A 1HXUA 1QJPA 3LK3A 3PGUA 2XE1A 4E1SA 3VZWX 5B66O 4GCPA 3AA1B 2M06A 4GCQA 3A2SX 2K4TA 4FSOA 3AAAA 4FOZA 1T1LA 2WJRA
chains in the Genus database with same CATH topology
3DA3A 1P4TA 1YS5A 4AKRA 3V8UA 1IZNA 4O4UA 4AKRB 4C69X 1IZNB 4O4XA 2XG6A 1MM4A 4FRXA 4D5UA 3POXA 2LHFA 2XTQA 4N58A 4JCHA 4F4BA 4U9CA 3LK41 4LSHA 3AA6A 2YNKA 4AKMA 1ZHZA 3AA6B 3NSGA 5T5FA 6PRNA 2JMMA 1MM5A 2PRNA 2KXPB 2Y2XA 4KR8A 1PRNA 4AYEC 2J1NA 1PHOA 4FZLA 4LSFA 2LFUA 2KZ7A 2Y7SA 3T24A 2KZ7B 2W80C 5AFUL 4GF4A 1GFNA 5DL5A 4RJWA 5D5DA 3AA1A 3WI5A 1MPFA 3JTYA 1BXWA 2N2MA 4PUXA 5EE2A 5G26A 1Q9GA 4XNKA 3O0EA 4XNLA 2FGRA 4AZLA 1ZHWA 3QRAA 3KVDD 4RLBA 3SYBA 4E1TA 5DL6A 5FVNA 3RBHA 3POUA 1BT9A 2GE4A 1HXXA 5JDPA 4G75A 2QTKA 4RL9A 5AFUK 2M07A 2XE2A 5DL8A 5DL7A 2KXPA 3TZGA 4AYDC 4QQ1A 2N2LA 2XE5A 5PRNA 3PRNA 1GFPA 3LK42 4KRAA 4FT6A 3HOLA 4GHBA 3SY9A 4BUMX 4FESA 5GV0A 2W81C 1GFQA 4LSEA 3AA0B 4AYNA 5ADXL 4FUVA 3VE1A 4RLCA 1ZHXA 1G90A 3VZTX 3T20A 1OPFA 1H6S1 2ODJA 3LK2B 3VY9X 3PQUA 1OSMA 1ZHTA 4JFBA 2Y0HA 4LSIA 3SY7A 4AYID 1E54A 4O3WA 1HXTA 2Y0LA 3G7GA 3AAEB 2F1TA 2YPVA 3SZVA 3VZUX 2XMXA 3POQA 4D65A 2XE3A 4O3XB 4O49A 2KDYA 3DA4A 5ADXK 2MHLA 4FMSA 1ORMA 2K0LA 3T0SA 4RJXA 1ZHYA 3SZDA 3UU2A 3UPGA 3PQSA 3LK3B 2X27X 3AA0A 3HOEA 3HW9A 5IYUA 3C5OA 4FSPA 3AAAB 3SYSA 1GFOA 3WI4A 7PRNA 4N59A 3LK2A 2ZLDA 1QJ8A 3AA7A 4AYMC 2XTRA 2ERVA 3AA7B 3EMNX 8PRNA 2ZFGA 1QJ9A 4FZMA 3AAEA 3FYXA 2F1VA 4Z3TA 4G76A 1THQA 3VY8X 2KC0A 2O4VA 2J4UP 2PORA 4AUIA 3HWBA 1GFMA 4O3YA 3K19A 4D64A 3GP6A 3UAQA 2MNHA 2Y0KA 3QRCA 3PORA 4FZNA 2OMFA 4FRTA 1Q9FA 4GCSA 4KR4A 4AFKA 2FGQX 3VE2A 4B61A 1BH3A 1HXUA 1QJPA 3LK3A 4E1SA 2XE1A 3VZWX 4GCPA 3AA1B 2M06A 4GCQA 3A2SX 2K4TA 4FSOA 3AAAA 4FOZA 4O3ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNK A;  4XNL A;  4AZL A;  5D5D A;  5IYU A;  4AFK A;  3RBH A;  4B61 A; 
#chains in the Genus database with same CATH topology
 3DA3 A;  1P4T A;  1YS5 A;  4AKR A;  3V8U A;  1IZN A;  4O4U A;  2R4O A;  4AKR B;  4C69 X;  1IZN B;  4O4X A;  2XG6 A;  1MM4 A;  4FRX A;  4D5U A;  3POX A;  2LHF A;  2XTQ A;  4N58 A;  4JCH A;  4F4B A;  4U9C A;  3LK4 1;  4LSH A;  3AA6 A;  2YNK A;  4AKM A;  1ZHZ A;  3AA6 B;  3NSG A;  3PGS A;  5T5F A;  6PRN A;  2JMM A;  1MM5 A;  2PRN A;  2KXP B;  2Y2X A;  4KR8 A;  1PRN A;  4AYE C;  2J1N A;  1PHO A;  4FZL A;  4LSF A;  2LFU A;  2KZ7 A;  2Y7S A;  3T24 A;  2KZ7 B;  2W80 C;  5GTI O;  5AFU L;  4GF4 A;  1GFN A;  5DL5 A;  4RJW A;  4C00 A;  4C4V B;  4FQE A;  5D5D A;  3AA1 A;  3WI5 A;  2IWW A;  5G39 A;  1MPF A;  5GV0 A;  3JTY A;  1BXW A;  2N2M A;  4PUX A;  5EE2 A;  5G26 A;  1Q9G A;  3PGR A;  4XNK A;  3O0E A;  4XNL A;  2FGR A;  4AZL A;  1ZHW A;  3BRY A;  3KVD D;  3QRA A;  4N74 A;  4RLB A;  5DL6 A;  3SYB A;  5FVN A;  3RBH A;  2WVP A;  3POU A;  1BT9 A;  2GE4 A;  2R8A A;  5KAF O;  1HXX A;  5JDP A;  4G75 A;  2QTK A;  4RL9 A;  5AFU K;  2M07 A;  2XE2 A;  4E1T A;  5DL8 A;  5DL7 A;  2KXP A;  3DWO X;  3TZG A;  2WJQ A;  3BRZ A;  4AYD C;  4QQ1 A;  2N2L A;  2XE5 A;  5PRN A;  5B5E O;  3DZM A;  3KZI O;  1GFP A;  3LK4 2;  3PRN A;  4KRA A;  4FT6 A;  2R88 A;  3HOL A;  4GHB A;  5G38 A;  4FES A;  3SY9 A;  4BUM X;  2W81 C;  1GFQ A;  4LSE A;  3AA0 B;  4AYN A;  4C4V A;  5ADX L;  4FUV A;  3VE1 A;  4RLC A;  2R4L A;  5H2F O;  1ZHX A;  1G90 A;  3VZT X;  3T20 A;  1OPF A;  1H6S 1;  2ODJ A;  3LK2 B;  5KAI O;  3PQU A;  3VY9 X;  1OSM A;  1ZHT A;  4JFB A;  2Y0H A;  4LSI A;  3SY7 A;  4AYI D;  1E54 A;  4O3W A;  1HXT A;  2Y0L A;  4PJ0 O;  4UB6 O;  3G7G A;  4N75 A;  3AAE B;  3WU2 O;  2F1T A;  2R4N A;  2YPV A;  3SZV A;  3VZU X;  2XMX A;  3POQ A;  4D65 A;  2XE3 A;  2F1C X;  4IL6 O;  4O3X B;  4O49 A;  2KDY A;  3DA4 A;  5ADX K;  4PR7 A;  2MHL A;  4K3B A;  5E79 O;  4FMS A;  1ORM A;  1S5L O;  2K0L A;  3T0S A;  4AFK A;  4RJX A;  1ZHY A;  3SZD A;  3UU2 A;  2JQY A;  3UPG A;  5GTH O;  3PQS A;  3BS0 A;  2X9K A;  3LK3 B;  2X27 X;  3AA0 A;  3HOE A;  3HW9 A;  5IYU A;  3C5O A;  2R89 A;  4FSP A;  3AAA B;  3SYS A;  4CTD A;  4O3Z A;  3NJT A;  1GFO A;  3A0B O;  3WI4 A;  4N59 A;  3LK2 A;  2ZLD A;  1QJ8 A;  7PRN A;  3AA7 A;  2AXT O;  4AYM C;  2XTR A;  2ERV A;  3AA7 B;  1T16 A;  3A0H O;  2ZFG A;  3EMN X;  1QJ9 A;  5TIS O;  4FZM A;  8PRN A;  3AAE A;  3FYX A;  4K3C A;  2F1V A;  2R4P A;  4Z3T A;  4G76 A;  1THQ A;  2IWV A;  3VY8 X;  2KC0 A;  2O4V A;  2J4U P;  2POR A;  4AUI A;  3HWB A;  1GFM A;  3PF1 A;  3K19 A;  4O3Y A;  3GP6 A;  4D64 A;  3DWN A;  3UAQ A;  2MNH A;  2Y0K A;  3QRC A;  3POR A;  4FZN A;  2OMF A;  3JCU O;  1Q9F A;  4FRT A;  4GCS A;  4KR4 A;  2FGQ X;  5G3A A;  3VE2 A;  4B61 A;  4UB8 O;  1BH3 A;  1HXU A;  1QJP A;  3LK3 A;  3PGU A;  2XE1 A;  4E1S A;  3VZW X;  5B66 O;  4GCP A;  3AA1 B;  2M06 A;  4GCQ A;  3A2S X;  2K4T A;  4FSO A;  3AAA A;  4FOZ A;  1T1L A;  2WJR A; 
#chains in the Genus database with same CATH homology
 3DA3 A;  1P4T A;  1YS5 A;  4AKR A;  3V8U A;  1IZN A;  4O4U A;  4AKR B;  4C69 X;  1IZN B;  4O4X A;  2XG6 A;  1MM4 A;  4FRX A;  4D5U A;  3POX A;  2LHF A;  2XTQ A;  4N58 A;  4JCH A;  4F4B A;  4U9C A;  3LK4 1;  4LSH A;  3AA6 A;  2YNK A;  4AKM A;  1ZHZ A;  3AA6 B;  3NSG A;  5T5F A;  6PRN A;  2JMM A;  1MM5 A;  2PRN A;  2KXP B;  2Y2X A;  4KR8 A;  1PRN A;  4AYE C;  2J1N A;  1PHO A;  4FZL A;  4LSF A;  2LFU A;  2KZ7 A;  2Y7S A;  3T24 A;  2KZ7 B;  2W80 C;  5AFU L;  4GF4 A;  1GFN A;  5DL5 A;  4RJW A;  5D5D A;  3AA1 A;  3WI5 A;  1MPF A;  3JTY A;  1BXW A;  2N2M A;  4PUX A;  5EE2 A;  5G26 A;  1Q9G A;  4XNK A;  3O0E A;  4XNL A;  2FGR A;  4AZL A;  1ZHW A;  3QRA A;  3KVD D;  4RLB A;  3SYB A;  4E1T A;  5DL6 A;  5FVN A;  3RBH A;  3POU A;  1BT9 A;  2GE4 A;  1HXX A;  5JDP A;  4G75 A;  2QTK A;  4RL9 A;  5AFU K;  2M07 A;  2XE2 A;  5DL8 A;  5DL7 A;  2KXP A;  3TZG A;  4AYD C;  4QQ1 A;  2N2L A;  2XE5 A;  5PRN A;  3PRN A;  1GFP A;  3LK4 2;  4KRA A;  4FT6 A;  3HOL A;  4GHB A;  3SY9 A;  4BUM X;  4FES A;  5GV0 A;  2W81 C;  1GFQ A;  4LSE A;  3AA0 B;  4AYN A;  5ADX L;  4FUV A;  3VE1 A;  4RLC A;  1ZHX A;  1G90 A;  3VZT X;  3T20 A;  1OPF A;  1H6S 1;  2ODJ A;  3LK2 B;  3VY9 X;  3PQU A;  1OSM A;  1ZHT A;  4JFB A;  2Y0H A;  4LSI A;  3SY7 A;  4AYI D;  1E54 A;  4O3W A;  1HXT A;  2Y0L A;  3G7G A;  3AAE B;  2F1T A;  2YPV A;  3SZV A;  3VZU X;  2XMX A;  3POQ A;  4D65 A;  2XE3 A;  4O3X B;  4O49 A;  2KDY A;  3DA4 A;  5ADX K;  2MHL A;  4FMS A;  1ORM A;  2K0L A;  3T0S A;  4RJX A;  1ZHY A;  3SZD A;  3UU2 A;  3UPG A;  3PQS A;  3LK3 B;  2X27 X;  3AA0 A;  3HOE A;  3HW9 A;  5IYU A;  3C5O A;  4FSP A;  3AAA B;  3SYS A;  1GFO A;  3WI4 A;  7PRN A;  4N59 A;  3LK2 A;  2ZLD A;  1QJ8 A;  3AA7 A;  4AYM C;  2XTR A;  2ERV A;  3AA7 B;  3EMN X;  8PRN A;  2ZFG A;  1QJ9 A;  4FZM A;  3AAE A;  3FYX A;  2F1V A;  4Z3T A;  4G76 A;  1THQ A;  3VY8 X;  2KC0 A;  2O4V A;  2J4U P;  2POR A;  4AUI A;  3HWB A;  1GFM A;  4O3Y A;  3K19 A;  4D64 A;  3GP6 A;  3UAQ A;  2MNH A;  2Y0K A;  3QRC A;  3POR A;  4FZN A;  2OMF A;  4FRT A;  1Q9F A;  4GCS A;  4KR4 A;  4AFK A;  2FGQ X;  3VE2 A;  4B61 A;  1BH3 A;  1HXU A;  1QJP A;  3LK3 A;  4E1S A;  2XE1 A;  3VZW X;  4GCP A;  3AA1 B;  2M06 A;  4GCQ A;  3A2S X;  2K4T A;  4FSO A;  3AAA A;  4FOZ A;  4O3Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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