4AFKA

In meso structure of alginate transporter, alge, from pseudomonas aeruginosa, pao1
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
454
structure length
430
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
total genus 131
structure length 430
sequence length 454
ec nomenclature
pdb deposition date 2012-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4afkA00
4XNKA 5D5DA 4B61A 3RBHA 5IYUA 4AFKA 4XNLA 4AZLA
chains in the Genus database with same CATH superfamily
4K3CA 5DL5A 3PRNA 7PRNA 4KR4A 1GFQA 4B61A 1ZHXA 3AA7A 3LK3B 4N58A 2LHFA 4XNLA 4E1TA 4LSEA 3A2SX 2Y0KA 4RJXA 5GTHO 1BH3A 2WJQA 4RJWA 4N59A 2XE5A 4FUVA 2LFUA 3PORA 3QRCA 1ZHZA 2ERVA 2X9KA 4LSFA 1T1LA 4FSPA 1P4TA 4GF4A 3VE1A 3POUA 2W81C 3T24A 3PF1A 5AFUL 5AFUK 4LSHA 5ADXL 1GFNA 1T16A 2YPVA 3AA1B 3AA0B 2MNHA 4FZNA 1E54A 1QJPA 4G76A 2N2LA 2ZLDA 4JCHA 4AFKA 5DL6A 5IYUA 2ODJA 3GP6A 3TZGA 3C5OA 4RLCA 1IZNB 2XG6A 3POXA 4RL9A 3JTYA 5GTIO 3KZIO 3WI4A 2WJRA 5G39A 2XE1A 2KXPB 3AAEB 3DZMA 2R89A 3HW9A 4FESA 4E1SA 6PRNA 1ZHYA 2QTKA 3O0EA 3RBHA 8PRNA 2J4UP 5T5FA 2KXPA 3G7GA 2R88A 2K4TA 4O3YA 2JMMA 1ZHWA 4PR7A 1OPFA 4G75A 3HWBA 4IL6O 4FT6A 4UB8O 4D65A 3DA3A 3SY9A 2OMFA 2Y2XA 4FRTA 2XE3A 4C00A 2XE2A 2O4VA 1YS5A 5G26A 4O3XB 1GFMA 3HOEA 3UAQA 2W80C 4GCSA 2IWWA 2F1CX 1S5LO 1ZHTA 4GHBA 4FSOA 2FGQX 3AAAA 4O4XA 4K3BA 3SY7A 3VE2A 1MM4A 3VY9X 3LK2B 4N74A 3AA1A 5EE2A 2XTRA 4UB6O 2FGRA 4AYID 2XTQA 4D64A 1HXTA 1GFPA 2Y0LA 4C4VB 4F4BA 2Y7SA 3A0HO 4AYDC 4PJ0O 1H6S1 3AA6B 2Y0HA 2R8AA 1MPFA 4FZMA 3AAEA 4LSIA 4AYNA 2M06A 4CTDA 5B5EO 1HXUA 2X27X 4FRXA 1Q9GA 2KZ7B 3NJTA 2N2MA 5KAIO 3QRAA 4N75A 4U9CA 2KDYA 2R4NA 1PHOA 3LK42 3LK3A 4AZLA 3AAAB 2KZ7A 3BRYA 1IZNA 1BXWA 5DL7A 4O49A 4AYMC 5B66O 3DWNA 3POQA 4C69X 1MM5A 2MHLA 2F1TA 3PQSA 4KRAA 2IWVA 4AKMA 3A0BO 4AUIA 3LK41 1OSMA 4JFBA 2R4PA 4GCPA 3AA7B 5ADXK 2R4LA 2KC0A 3DA4A 3V8UA 2J1NA 3T20A 4XNKA 3PGUA 3K19A 2PORA 5PRNA 2K0LA 2PRNA 3UPGA 1ORMA 2F1VA 2JQYA 3LK2A 1G90A 1THQA 4AKRB 3VZTX 3JCUO 1QJ8A 3BRZA 3VZWX 4Z3TA 1PRNA 1HXXA 3UU2A 3PGSA 5GV0A 4FQEA 4KR8A 2R4OA 3AA6A 3KVDD 3NSGA 4BUMX 1GFOA 3SZVA 2XMXA 5G38A 3T0SA 3DWOX 5DL8A 2ZFGA 1BT9A 3WU2O 3SYBA 2AXTO 4RLBA 4FZLA 3VZUX 3HOLA 3VY8X 2GE4A 3FYXA 4D5UA 5E79O 4FMSA 3SYSA 5JDPA 3PQUA 2WVPA 4FOZA 4O3ZA 4QQ1A 4PUXA 3WI5A 2YNKA 4C4VA 3EMNX 4GCQA 4O4UA 5D5DA 5KAFO 3SZDA 3PGRA 5H2FO 3AA0A 5TISO 3BS0A 4O3WA 5G3AA 4AKRA 2M07A 1Q9FA 1QJ9A 5FVNA 4AYEC
chains in the Genus database with same CATH topology
5DL5A 3PRNA 7PRNA 4KR4A 1GFQA 1ZHXA 3AA7A 3LK3B 4N58A 2LHFA 4XNLA 4E1TA 4LSEA 3A2SX 2Y0KA 4RJXA 1BH3A 4RJWA 4N59A 2XE5A 4FUVA 2LFUA 3PORA 3QRCA 1ZHZA 2ERVA 4LSFA 4FSPA 1P4TA 4GF4A 3VE1A 3POUA 2W81C 3T24A 5AFUL 5AFUK 4LSHA 5ADXL 1GFNA 3AA0B 2YPVA 3AA1B 4FZNA 2MNHA 4B61A 1E54A 1QJPA 4G76A 2N2LA 2ZLDA 4JCHA 4AFKA 5DL6A 5IYUA 2ODJA 3GP6A 3TZGA 3C5OA 4RLCA 1IZNB 2XG6A 3POXA 4RL9A 3JTYA 3WI4A 2XE1A 2KXPB 3AAEB 3HW9A 4FESA 4E1SA 6PRNA 5GV0A 1ZHYA 2QTKA 3O0EA 3RBHA 8PRNA 2J4UP 5T5FA 2KXPA 3G7GA 2K4TA 4O3YA 2JMMA 1ZHWA 1OPFA 4G75A 3HWBA 4FT6A 4D65A 3DA3A 3SY9A 2OMFA 2Y2XA 4FRTA 2XE3A 2XE2A 2O4VA 1YS5A 5G26A 4O3XB 1GFMA 3HOEA 3UAQA 2W80C 4GCSA 4GHBA 1ZHTA 3VE2A 4FSOA 2FGQX 3AAAA 4O4XA 3SY7A 3VY9X 1MM4A 3LK2B 3AA1A 5EE2A 2XTRA 2FGRA 4AYID 2XTQA 4D64A 1HXTA 1GFPA 2Y0LA 4F4BA 2Y7SA 4AYDC 1H6S1 3AA6B 2Y0HA 4FZMA 1MPFA 4LSIA 3AAEA 4AYNA 2M06A 1HXUA 2X27X 4FRXA 1Q9GA 2KZ7B 2N2MA 3QRAA 4U9CA 2KDYA 3LK42 1PHOA 3LK3A 4AZLA 3AAAB 2KZ7A 1IZNA 1BXWA 5DL7A 4O49A 4AYMC 3POQA 4C69X 1MM5A 2MHLA 2F1TA 3PQSA 4KRAA 4AKMA 4AUIA 3LK41 1OSMA 4JFBA 4GCPA 3AA7B 5ADXK 2KC0A 3DA4A 3V8UA 2J1NA 3T20A 4XNKA 3K19A 2PORA 5PRNA 2K0LA 2PRNA 3UPGA 1ORMA 2F1VA 3LK2A 1G90A 1THQA 4AKRB 3VZTX 1QJ8A 3VZWX 4Z3TA 1PRNA 1HXXA 3UU2A 4KR8A 3KVDD 3AA6A 3NSGA 4BUMX 1GFOA 3SZVA 2XMXA 3T0SA 5DL8A 2ZFGA 1BT9A 3SYBA 4RLBA 3VZUX 4FZLA 3HOLA 3VY8X 2GE4A 3FYXA 4D5UA 5JDPA 4FMSA 3SYSA 3PQUA 4FOZA 4O3ZA 4QQ1A 4PUXA 3WI5A 2YNKA 3EMNX 4GCQA 4O4UA 5D5DA 3SZDA 3AA0A 4AKRA 4O3WA 4AYEC 2M07A 1Q9FA 1QJ9A 5FVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNK A;  5D5D A;  4B61 A;  3RBH A;  5IYU A;  4AFK A;  4XNL A;  4AZL A; 
#chains in the Genus database with same CATH topology
 4K3C A;  5DL5 A;  3PRN A;  7PRN A;  4KR4 A;  1GFQ A;  4B61 A;  1ZHX A;  3AA7 A;  3LK3 B;  4N58 A;  2LHF A;  4XNL A;  4E1T A;  4LSE A;  3A2S X;  2Y0K A;  4RJX A;  5GTH O;  1BH3 A;  2WJQ A;  4RJW A;  4N59 A;  2XE5 A;  4FUV A;  2LFU A;  3POR A;  3QRC A;  1ZHZ A;  2ERV A;  2X9K A;  4LSF A;  1T1L A;  4FSP A;  1P4T A;  4GF4 A;  3VE1 A;  3POU A;  2W81 C;  3T24 A;  3PF1 A;  5AFU L;  5AFU K;  4LSH A;  5ADX L;  1GFN A;  1T16 A;  2YPV A;  3AA1 B;  3AA0 B;  2MNH A;  4FZN A;  1E54 A;  1QJP A;  4G76 A;  2N2L A;  2ZLD A;  4JCH A;  4AFK A;  5DL6 A;  5IYU A;  2ODJ A;  3GP6 A;  3TZG A;  3C5O A;  4RLC A;  1IZN B;  2XG6 A;  3POX A;  4RL9 A;  3JTY A;  5GTI O;  3KZI O;  3WI4 A;  2WJR A;  5G39 A;  2XE1 A;  2KXP B;  3AAE B;  3DZM A;  2R89 A;  3HW9 A;  4FES A;  4E1S A;  6PRN A;  1ZHY A;  2QTK A;  3O0E A;  3RBH A;  8PRN A;  2J4U P;  5T5F A;  2KXP A;  3G7G A;  2R88 A;  2K4T A;  4O3Y A;  2JMM A;  1ZHW A;  4PR7 A;  1OPF A;  4G75 A;  3HWB A;  4IL6 O;  4FT6 A;  4UB8 O;  4D65 A;  3DA3 A;  3SY9 A;  2OMF A;  2Y2X A;  4FRT A;  2XE3 A;  4C00 A;  2XE2 A;  2O4V A;  1YS5 A;  5G26 A;  4O3X B;  1GFM A;  3HOE A;  3UAQ A;  2W80 C;  4GCS A;  2IWW A;  2F1C X;  1S5L O;  1ZHT A;  4GHB A;  4FSO A;  2FGQ X;  3AAA A;  4O4X A;  4K3B A;  3SY7 A;  3VE2 A;  1MM4 A;  3VY9 X;  3LK2 B;  4N74 A;  3AA1 A;  5EE2 A;  2XTR A;  4UB6 O;  2FGR A;  4AYI D;  2XTQ A;  4D64 A;  1HXT A;  1GFP A;  2Y0L A;  4C4V B;  4F4B A;  2Y7S A;  3A0H O;  4AYD C;  4PJ0 O;  1H6S 1;  3AA6 B;  2Y0H A;  2R8A A;  1MPF A;  4FZM A;  3AAE A;  4LSI A;  4AYN A;  2M06 A;  4CTD A;  5B5E O;  1HXU A;  2X27 X;  4FRX A;  1Q9G A;  2KZ7 B;  3NJT A;  2N2M A;  5KAI O;  3QRA A;  4N75 A;  4U9C A;  2KDY A;  2R4N A;  1PHO A;  3LK4 2;  3LK3 A;  4AZL A;  3AAA B;  2KZ7 A;  3BRY A;  1IZN A;  1BXW A;  5DL7 A;  4O49 A;  4AYM C;  5B66 O;  3DWN A;  3POQ A;  4C69 X;  1MM5 A;  2MHL A;  2F1T A;  3PQS A;  4KRA A;  2IWV A;  4AKM A;  3A0B O;  4AUI A;  3LK4 1;  1OSM A;  4JFB A;  2R4P A;  4GCP A;  3AA7 B;  5ADX K;  2R4L A;  2KC0 A;  3DA4 A;  3V8U A;  2J1N A;  3T20 A;  4XNK A;  3PGU A;  3K19 A;  2POR A;  5PRN A;  2K0L A;  2PRN A;  3UPG A;  1ORM A;  2F1V A;  2JQY A;  3LK2 A;  1G90 A;  1THQ A;  4AKR B;  3VZT X;  3JCU O;  1QJ8 A;  3BRZ A;  3VZW X;  4Z3T A;  1PRN A;  1HXX A;  3UU2 A;  3PGS A;  5GV0 A;  4FQE A;  4KR8 A;  2R4O A;  3AA6 A;  3KVD D;  3NSG A;  4BUM X;  1GFO A;  3SZV A;  2XMX A;  5G38 A;  3T0S A;  3DWO X;  5DL8 A;  2ZFG A;  1BT9 A;  3WU2 O;  3SYB A;  2AXT O;  4RLB A;  4FZL A;  3VZU X;  3HOL A;  3VY8 X;  2GE4 A;  3FYX A;  4D5U A;  5E79 O;  4FMS A;  3SYS A;  5JDP A;  3PQU A;  2WVP A;  4FOZ A;  4O3Z A;  4QQ1 A;  4PUX A;  3WI5 A;  2YNK A;  4C4V A;  3EMN X;  4GCQ A;  4O4U A;  5D5D A;  5KAF O;  3SZD A;  3PGR A;  5H2F O;  3AA0 A;  5TIS O;  3BS0 A;  4O3W A;  5G3A A;  4AKR A;  2M07 A;  1Q9F A;  1QJ9 A;  5FVN A;  4AYE C; 
#chains in the Genus database with same CATH homology
 5DL5 A;  3PRN A;  7PRN A;  4KR4 A;  1GFQ A;  1ZHX A;  3AA7 A;  3LK3 B;  4N58 A;  2LHF A;  4XNL A;  4E1T A;  4LSE A;  3A2S X;  2Y0K A;  4RJX A;  1BH3 A;  4RJW A;  4N59 A;  2XE5 A;  4FUV A;  2LFU A;  3POR A;  3QRC A;  1ZHZ A;  2ERV A;  4LSF A;  4FSP A;  1P4T A;  4GF4 A;  3VE1 A;  3POU A;  2W81 C;  3T24 A;  5AFU L;  5AFU K;  4LSH A;  5ADX L;  1GFN A;  3AA0 B;  2YPV A;  3AA1 B;  4FZN A;  2MNH A;  4B61 A;  1E54 A;  1QJP A;  4G76 A;  2N2L A;  2ZLD A;  4JCH A;  4AFK A;  5DL6 A;  5IYU A;  2ODJ A;  3GP6 A;  3TZG A;  3C5O A;  4RLC A;  1IZN B;  2XG6 A;  3POX A;  4RL9 A;  3JTY A;  3WI4 A;  2XE1 A;  2KXP B;  3AAE B;  3HW9 A;  4FES A;  4E1S A;  6PRN A;  5GV0 A;  1ZHY A;  2QTK A;  3O0E A;  3RBH A;  8PRN A;  2J4U P;  5T5F A;  2KXP A;  3G7G A;  2K4T A;  4O3Y A;  2JMM A;  1ZHW A;  1OPF A;  4G75 A;  3HWB A;  4FT6 A;  4D65 A;  3DA3 A;  3SY9 A;  2OMF A;  2Y2X A;  4FRT A;  2XE3 A;  2XE2 A;  2O4V A;  1YS5 A;  5G26 A;  4O3X B;  1GFM A;  3HOE A;  3UAQ A;  2W80 C;  4GCS A;  4GHB A;  1ZHT A;  3VE2 A;  4FSO A;  2FGQ X;  3AAA A;  4O4X A;  3SY7 A;  3VY9 X;  1MM4 A;  3LK2 B;  3AA1 A;  5EE2 A;  2XTR A;  2FGR A;  4AYI D;  2XTQ A;  4D64 A;  1HXT A;  1GFP A;  2Y0L A;  4F4B A;  2Y7S A;  4AYD C;  1H6S 1;  3AA6 B;  2Y0H A;  4FZM A;  1MPF A;  4LSI A;  3AAE A;  4AYN A;  2M06 A;  1HXU A;  2X27 X;  4FRX A;  1Q9G A;  2KZ7 B;  2N2M A;  3QRA A;  4U9C A;  2KDY A;  3LK4 2;  1PHO A;  3LK3 A;  4AZL A;  3AAA B;  2KZ7 A;  1IZN A;  1BXW A;  5DL7 A;  4O49 A;  4AYM C;  3POQ A;  4C69 X;  1MM5 A;  2MHL A;  2F1T A;  3PQS A;  4KRA A;  4AKM A;  4AUI A;  3LK4 1;  1OSM A;  4JFB A;  4GCP A;  3AA7 B;  5ADX K;  2KC0 A;  3DA4 A;  3V8U A;  2J1N A;  3T20 A;  4XNK A;  3K19 A;  2POR A;  5PRN A;  2K0L A;  2PRN A;  3UPG A;  1ORM A;  2F1V A;  3LK2 A;  1G90 A;  1THQ A;  4AKR B;  3VZT X;  1QJ8 A;  3VZW X;  4Z3T A;  1PRN A;  1HXX A;  3UU2 A;  4KR8 A;  3KVD D;  3AA6 A;  3NSG A;  4BUM X;  1GFO A;  3SZV A;  2XMX A;  3T0S A;  5DL8 A;  2ZFG A;  1BT9 A;  3SYB A;  4RLB A;  3VZU X;  4FZL A;  3HOL A;  3VY8 X;  2GE4 A;  3FYX A;  4D5U A;  5JDP A;  4FMS A;  3SYS A;  3PQU A;  4FOZ A;  4O3Z A;  4QQ1 A;  4PUX A;  3WI5 A;  2YNK A;  3EMN X;  4GCQ A;  4O4U A;  5D5D A;  3SZD A;  3AA0 A;  4AKR A;  4O3W A;  4AYE C;  2M07 A;  1Q9F A;  1QJ9 A;  5FVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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