4AFKA

In meso structure of alginate transporter, alge, from pseudomonas aeruginosa, pao1
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
454
structure length
430
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
total genus 131
structure length 430
sequence length 454
ec nomenclature
pdb deposition date 2012-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4afkA00
4AFKA 5IYUA 4XNLA 5D5DA 3RBHA 4AZLA 4B61A 4XNKA
chains in the Genus database with same CATH superfamily
3V8UA 4O3WA 3DA3A 2M06A 1ZHYA 1BH3A 2QTKA 2X27X 4LSIA 4PJ0O 2F1CX 2WVPA 3AA7A 4D5UA 4FESA 5H2FO 2N2LA 4QQ1A 2WJRA 4IL6O 2PORA 4BUMX 5KAIO 5AFUK 1ORMA 1YS5A 2R88A 4K3BA 3O0EA 2MNHA 2J1NA 4GCQA 1ZHWA 2XE1A 2XE3A 4FZLA 3DWNA 1HXTA 4AYMC 4AKMA 4O4UA 2KXPA 2ZFGA 3POUA 3WI5A 4CTDA 4FUVA 2XTRA 3AA7B 2WJQA 3EMNX 4GHBA 3POXA 5AFUL 5GV0A 4KR4A 7PRNA 4B61A 1P4TA 1GFMA 4O49A 5ADXK 4AYDC 2O4VA 3NSGA 4FRTA 1BXWA 3PGRA 5FVNA 3VE1A 3VY9X 4AKRA 5T5FA 2F1TA 4RJXA 4FRXA 3SYSA 3SZDA 4N58A 3AAAA 1QJ9A 2Y7SA 5GTHO 2W81C 1GFOA 2Y0LA 1GFPA 2IWWA 3HOEA 4Z3TA 1ZHZA 1S5LO 3SY7A 3T24A 2PRNA 4O3ZA 4JFBA 4E1SA 1ZHTA 3LK3B 5DL7A 2OMFA 2R4LA 3JCUO 3PQSA 2R4NA 3DA4A 1IZNB 5B66O 2IWVA 3WU2O 4G75A 1MPFA 3SZVA 1QJ8A 2XE2A 3UU2A 2FGQX 1MM4A 2MHLA 2W80C 3KZIO 2FGRA 3LK41 4K3CA 2KC0A 4O3YA 5DL5A 3K19A 2ODJA 3BS0A 3BRZA 3AA6A 3VE2A 4AYEC 1G90A 1GFNA 3HOLA 3DZMA 3QRCA 3AAEB 3AA0B 4C69X 4C4VA 3PF1A 6PRNA 3AA0A 3AAEA 5G39A 4N75A 1OPFA 3A2SX 4PUXA 4FMSA 4LSHA 3UAQA 4O4XA 3SY9A 2XTQA 2F1VA 2R89A 4UB8O 3TZGA 4D65A 4FSPA 1T1LA 3HWBA 2LFUA 3LK2A 3PGUA 3AA1A 5TISO 2XG6A 3DWOX 3G7GA 4AYNA 2JQYA 4F4BA 5E79O 3GP6A 2N2MA 5GTIO 1E54A 3LK2B 2KZ7B 3LK3A 1H6S1 2AXTO 3QRAA 3AA1B 4FZMA 8PRNA 2ERVA 4XNLA 3PORA 1OSMA 1PHOA 2KDYA 2YPVA 3A0HO 2YNKA 4JCHA 4PR7A 4U9CA 4E1TA 3T20A 2K0LA 4C00A 5ADXL 5G3AA 3AAAB 4LSEA 3FYXA 4LSFA 2Y0HA 5KAFO 3PQUA 2Y0KA 3BRYA 2ZLDA 4G76A 4KR8A 4C4VB 2R4PA 4FQEA 4AKRB 4FOZA 3C5OA 4FSOA 1BT9A 3VZUX 3WI4A 3A0BO 4FT6A 2R4OA 4D64A 5PRNA 1PRNA 2X9KA 2J4UP 2K4TA 5DL8A 4O3XB 1GFQA 2KZ7A 3PRNA 3UPGA 1HXXA 3NJTA 3HW9A 4N59A 3KVDD 1IZNA 1HXUA 2KXPB 1Q9FA 4GF4A 3SYBA 4AUIA 3VZTX 1Q9GA 2XMXA 4GCPA 4RLBA 4AZLA 4FZNA 4N74A 2R8AA 1QJPA 1ZHXA 4KRAA 4AFKA 2M07A 3POQA 3T0SA 5G38A 1T16A 3RBHA 3VY8X 3LK42 2Y2XA 5G26A 5EE2A 5JDPA 4RL9A 4XNKA 4RLCA 2JMMA 1MM5A 5IYUA 2LHFA 2GE4A 5DL6A 5D5DA 4RJWA 4UB6O 2XE5A 3VZWX 5B5EO 3AA6B 3PGSA 1THQA 3JTYA 4GCSA 4AYID
chains in the Genus database with same CATH topology
3V8UA 4O3WA 3DA3A 2M06A 1ZHYA 1BH3A 2QTKA 2X27X 4LSIA 4D5UA 3AA7A 4FESA 2N2LA 4QQ1A 2PORA 5AFUK 1ORMA 1YS5A 3O0EA 2MNHA 2J1NA 4GCQA 1ZHWA 2XE1A 2XE3A 4FZLA 1HXTA 4AYMC 4AKMA 4O4UA 2KXPA 2ZFGA 3POUA 3WI5A 4FUVA 2XTRA 3AA7B 3EMNX 4GHBA 3POXA 5AFUL 5GV0A 4KR4A 7PRNA 4B61A 1P4TA 1GFMA 4O49A 5ADXK 4AYDC 2O4VA 3NSGA 4FRTA 1BXWA 3VE1A 5FVNA 3VY9X 4AKRA 4F4BA 5T5FA 2F1TA 4RJXA 4FRXA 3SYSA 3SZDA 4N58A 3AAAA 1QJ9A 2Y7SA 2W81C 1GFOA 2Y0LA 1GFPA 3HOEA 4Z3TA 1ZHZA 3SY7A 3T24A 2PRNA 4O3ZA 4JFBA 4E1SA 1ZHTA 3LK3B 5DL7A 2OMFA 3PQSA 3DA4A 1IZNB 4G75A 1MPFA 3SZVA 2XE2A 1QJ8A 3UU2A 2FGQX 1MM4A 2MHLA 2W80C 2FGRA 3LK41 2KC0A 4O3YA 5DL5A 3K19A 2ODJA 3AA6A 3VE2A 4AYEC 1G90A 1GFNA 3HOLA 3QRCA 3AAEB 3AA0B 4C69X 6PRNA 3AA0A 3AAEA 1OPFA 3A2SX 4PUXA 4FMSA 4LSHA 3UAQA 4O4XA 3SY9A 2XTQA 2F1VA 4D65A 3TZGA 4FSPA 3LK2A 3HWBA 2LFUA 3AA1A 2XG6A 3G7GA 4AYNA 3GP6A 2N2MA 1E54A 3LK2B 2KZ7B 3LK3A 1H6S1 3QRAA 4FZMA 3AA1B 8PRNA 2ERVA 4XNLA 3PORA 1OSMA 1PHOA 2KDYA 2YPVA 2YNKA 4JCHA 4U9CA 4E1TA 3T20A 2K0LA 5ADXL 3AAAB 4LSEA 3FYXA 4LSFA 2Y0HA 3PQUA 2Y0KA 2ZLDA 4G76A 4KR8A 4AKRB 4FOZA 3C5OA 4FSOA 1BT9A 3VZUX 3WI4A 4FT6A 4D64A 5PRNA 1PRNA 2J4UP 2K4TA 5DL8A 4O3XB 1GFQA 2KZ7A 3PRNA 3UPGA 1HXXA 4BUMX 3HW9A 4N59A 3KVDD 1IZNA 1HXUA 2KXPB 1Q9FA 4GF4A 3SYBA 4AUIA 3VZTX 1Q9GA 2XMXA 4GCPA 4RLBA 4AZLA 4FZNA 1QJPA 1ZHXA 4KRAA 4AFKA 2M07A 3POQA 3T0SA 3RBHA 3VY8X 3LK42 2Y2XA 5G26A 5EE2A 5JDPA 4RL9A 4XNKA 4RLCA 2JMMA 1MM5A 5IYUA 2LHFA 2GE4A 5DL6A 5D5DA 4RJWA 2XE5A 3VZWX 3AA6B 1THQA 3JTYA 4GCSA 4AYID
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AFK A;  5IYU A;  4XNL A;  5D5D A;  3RBH A;  4AZL A;  4B61 A;  4XNK A; 
#chains in the Genus database with same CATH topology
 3V8U A;  4O3W A;  3DA3 A;  2M06 A;  1ZHY A;  1BH3 A;  2QTK A;  2X27 X;  4LSI A;  4PJ0 O;  2F1C X;  2WVP A;  3AA7 A;  4D5U A;  4FES A;  5H2F O;  2N2L A;  4QQ1 A;  2WJR A;  4IL6 O;  2POR A;  4BUM X;  5KAI O;  5AFU K;  1ORM A;  1YS5 A;  2R88 A;  4K3B A;  3O0E A;  2MNH A;  2J1N A;  4GCQ A;  1ZHW A;  2XE1 A;  2XE3 A;  4FZL A;  3DWN A;  1HXT A;  4AYM C;  4AKM A;  4O4U A;  2KXP A;  2ZFG A;  3POU A;  3WI5 A;  4CTD A;  4FUV A;  2XTR A;  3AA7 B;  2WJQ A;  3EMN X;  4GHB A;  3POX A;  5AFU L;  5GV0 A;  4KR4 A;  7PRN A;  4B61 A;  1P4T A;  1GFM A;  4O49 A;  5ADX K;  4AYD C;  2O4V A;  3NSG A;  4FRT A;  1BXW A;  3PGR A;  5FVN A;  3VE1 A;  3VY9 X;  4AKR A;  5T5F A;  2F1T A;  4RJX A;  4FRX A;  3SYS A;  3SZD A;  4N58 A;  3AAA A;  1QJ9 A;  2Y7S A;  5GTH O;  2W81 C;  1GFO A;  2Y0L A;  1GFP A;  2IWW A;  3HOE A;  4Z3T A;  1ZHZ A;  1S5L O;  3SY7 A;  3T24 A;  2PRN A;  4O3Z A;  4JFB A;  4E1S A;  1ZHT A;  3LK3 B;  5DL7 A;  2OMF A;  2R4L A;  3JCU O;  3PQS A;  2R4N A;  3DA4 A;  1IZN B;  5B66 O;  2IWV A;  3WU2 O;  4G75 A;  1MPF A;  3SZV A;  1QJ8 A;  2XE2 A;  3UU2 A;  2FGQ X;  1MM4 A;  2MHL A;  2W80 C;  3KZI O;  2FGR A;  3LK4 1;  4K3C A;  2KC0 A;  4O3Y A;  5DL5 A;  3K19 A;  2ODJ A;  3BS0 A;  3BRZ A;  3AA6 A;  3VE2 A;  4AYE C;  1G90 A;  1GFN A;  3HOL A;  3DZM A;  3QRC A;  3AAE B;  3AA0 B;  4C69 X;  4C4V A;  3PF1 A;  6PRN A;  3AA0 A;  3AAE A;  5G39 A;  4N75 A;  1OPF A;  3A2S X;  4PUX A;  4FMS A;  4LSH A;  3UAQ A;  4O4X A;  3SY9 A;  2XTQ A;  2F1V A;  2R89 A;  4UB8 O;  3TZG A;  4D65 A;  4FSP A;  1T1L A;  3HWB A;  2LFU A;  3LK2 A;  3PGU A;  3AA1 A;  5TIS O;  2XG6 A;  3DWO X;  3G7G A;  4AYN A;  2JQY A;  4F4B A;  5E79 O;  3GP6 A;  2N2M A;  5GTI O;  1E54 A;  3LK2 B;  2KZ7 B;  3LK3 A;  1H6S 1;  2AXT O;  3QRA A;  3AA1 B;  4FZM A;  8PRN A;  2ERV A;  4XNL A;  3POR A;  1OSM A;  1PHO A;  2KDY A;  2YPV A;  3A0H O;  2YNK A;  4JCH A;  4PR7 A;  4U9C A;  4E1T A;  3T20 A;  2K0L A;  4C00 A;  5ADX L;  5G3A A;  3AAA B;  4LSE A;  3FYX A;  4LSF A;  2Y0H A;  5KAF O;  3PQU A;  2Y0K A;  3BRY A;  2ZLD A;  4G76 A;  4KR8 A;  4C4V B;  2R4P A;  4FQE A;  4AKR B;  4FOZ A;  3C5O A;  4FSO A;  1BT9 A;  3VZU X;  3WI4 A;  3A0B O;  4FT6 A;  2R4O A;  4D64 A;  5PRN A;  1PRN A;  2X9K A;  2J4U P;  2K4T A;  5DL8 A;  4O3X B;  1GFQ A;  2KZ7 A;  3PRN A;  3UPG A;  1HXX A;  3NJT A;  3HW9 A;  4N59 A;  3KVD D;  1IZN A;  1HXU A;  2KXP B;  1Q9F A;  4GF4 A;  3SYB A;  4AUI A;  3VZT X;  1Q9G A;  2XMX A;  4GCP A;  4RLB A;  4AZL A;  4FZN A;  4N74 A;  2R8A A;  1QJP A;  1ZHX A;  4KRA A;  4AFK A;  2M07 A;  3POQ A;  3T0S A;  5G38 A;  1T16 A;  3RBH A;  3VY8 X;  3LK4 2;  2Y2X A;  5G26 A;  5EE2 A;  5JDP A;  4RL9 A;  4XNK A;  4RLC A;  2JMM A;  1MM5 A;  5IYU A;  2LHF A;  2GE4 A;  5DL6 A;  5D5D A;  4RJW A;  4UB6 O;  2XE5 A;  3VZW X;  5B5E O;  3AA6 B;  3PGS A;  1THQ A;  3JTY A;  4GCS A;  4AYI D; 
#chains in the Genus database with same CATH homology
 3V8U A;  4O3W A;  3DA3 A;  2M06 A;  1ZHY A;  1BH3 A;  2QTK A;  2X27 X;  4LSI A;  4D5U A;  3AA7 A;  4FES A;  2N2L A;  4QQ1 A;  2POR A;  5AFU K;  1ORM A;  1YS5 A;  3O0E A;  2MNH A;  2J1N A;  4GCQ A;  1ZHW A;  2XE1 A;  2XE3 A;  4FZL A;  1HXT A;  4AYM C;  4AKM A;  4O4U A;  2KXP A;  2ZFG A;  3POU A;  3WI5 A;  4FUV A;  2XTR A;  3AA7 B;  3EMN X;  4GHB A;  3POX A;  5AFU L;  5GV0 A;  4KR4 A;  7PRN A;  4B61 A;  1P4T A;  1GFM A;  4O49 A;  5ADX K;  4AYD C;  2O4V A;  3NSG A;  4FRT A;  1BXW A;  3VE1 A;  5FVN A;  3VY9 X;  4AKR A;  4F4B A;  5T5F A;  2F1T A;  4RJX A;  4FRX A;  3SYS A;  3SZD A;  4N58 A;  3AAA A;  1QJ9 A;  2Y7S A;  2W81 C;  1GFO A;  2Y0L A;  1GFP A;  3HOE A;  4Z3T A;  1ZHZ A;  3SY7 A;  3T24 A;  2PRN A;  4O3Z A;  4JFB A;  4E1S A;  1ZHT A;  3LK3 B;  5DL7 A;  2OMF A;  3PQS A;  3DA4 A;  1IZN B;  4G75 A;  1MPF A;  3SZV A;  2XE2 A;  1QJ8 A;  3UU2 A;  2FGQ X;  1MM4 A;  2MHL A;  2W80 C;  2FGR A;  3LK4 1;  2KC0 A;  4O3Y A;  5DL5 A;  3K19 A;  2ODJ A;  3AA6 A;  3VE2 A;  4AYE C;  1G90 A;  1GFN A;  3HOL A;  3QRC A;  3AAE B;  3AA0 B;  4C69 X;  6PRN A;  3AA0 A;  3AAE A;  1OPF A;  3A2S X;  4PUX A;  4FMS A;  4LSH A;  3UAQ A;  4O4X A;  3SY9 A;  2XTQ A;  2F1V A;  4D65 A;  3TZG A;  4FSP A;  3LK2 A;  3HWB A;  2LFU A;  3AA1 A;  2XG6 A;  3G7G A;  4AYN A;  3GP6 A;  2N2M A;  1E54 A;  3LK2 B;  2KZ7 B;  3LK3 A;  1H6S 1;  3QRA A;  4FZM A;  3AA1 B;  8PRN A;  2ERV A;  4XNL A;  3POR A;  1OSM A;  1PHO A;  2KDY A;  2YPV A;  2YNK A;  4JCH A;  4U9C A;  4E1T A;  3T20 A;  2K0L A;  5ADX L;  3AAA B;  4LSE A;  3FYX A;  4LSF A;  2Y0H A;  3PQU A;  2Y0K A;  2ZLD A;  4G76 A;  4KR8 A;  4AKR B;  4FOZ A;  3C5O A;  4FSO A;  1BT9 A;  3VZU X;  3WI4 A;  4FT6 A;  4D64 A;  5PRN A;  1PRN A;  2J4U P;  2K4T A;  5DL8 A;  4O3X B;  1GFQ A;  2KZ7 A;  3PRN A;  3UPG A;  1HXX A;  4BUM X;  3HW9 A;  4N59 A;  3KVD D;  1IZN A;  1HXU A;  2KXP B;  1Q9F A;  4GF4 A;  3SYB A;  4AUI A;  3VZT X;  1Q9G A;  2XMX A;  4GCP A;  4RLB A;  4AZL A;  4FZN A;  1QJP A;  1ZHX A;  4KRA A;  4AFK A;  2M07 A;  3POQ A;  3T0S A;  3RBH A;  3VY8 X;  3LK4 2;  2Y2X A;  5G26 A;  5EE2 A;  5JDP A;  4RL9 A;  4XNK A;  4RLC A;  2JMM A;  1MM5 A;  5IYU A;  2LHF A;  2GE4 A;  5DL6 A;  5D5D A;  4RJW A;  2XE5 A;  3VZW X;  3AA6 B;  1THQ A;  3JTY A;  4GCS A;  4AYI D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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