4AGHA

Structural features of ssdna binding protein mosub1 from magnaporthe oryzae
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
80
structure length
80
Chain Sequence
GSQVDAEGNPFWEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAELRSRGHDITD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords MOSUB1, TRANSCRIPTION COFACTOR
publication title Structural Features of the Single-Stranded DNA-Binding Protein Mosub1 from Magnaporthe Oryzae.
pubmed doi rcsb
source organism Magnaporthe oryzae
total genus 14
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2012-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02229 PC4 Transcriptional Coactivator p15 (PC4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.31.10 Mainly Beta Roll Transcriptional Co-activator pc4; Chain A Transcriptional Coactivator Pc4; Chain A 4aghA00
2C62A 3N1JA 3RA0A 4KOQA 2NVNA 3R9ZA 1L3AA 3N1IA 4KOOA 1PCFA 2PHEA 2IT9A 4KOPA 3R9YA 4USGA 3N1HA 4BHMA 4AGHA 3N1LA 4BG7A 3N1KA
chains in the Genus database with same CATH superfamily
2C62A 3N1JA 2M4FA 3RA0A 3CM1A 2GIDA 2GJEA 2GIDB 4KOQA 4BODA 2NVNA 3R9ZA 1L3AA 3K44A 3N1IA 4KOOA 1PCFA 2PHEA 2GJED 2IT9A 3MTVA 4KOPA 3R9YA 2GIAA 3N1HA 4USGA 4J38A 4BOBA 2GIAB 5FGPA 4BF3A 4BXMA 3OBHA 4BHMA 4AGHA 3N1LA 4BG7A 3N1KA
chains in the Genus database with same CATH topology
2C62A 3N1JA 3RA0A 4KOQA 2NVNA 3R9ZA 1L3AA 3N1IA 4KOOA 1PCFA 2PHEA 2IT9A 4KOPA 3R9YA 4USGA 3N1HA 4BHMA 4AGHA 3N1LA 4BG7A 3N1KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C62 A;  3N1J A;  3RA0 A;  4KOQ A;  2NVN A;  3R9Z A;  1L3A A;  3N1I A;  4KOO A;  1PCF A;  2PHE A;  2IT9 A;  4KOP A;  3R9Y A;  4USG A;  3N1H A;  4BHM A;  4AGH A;  3N1L A;  4BG7 A;  3N1K A; 
#chains in the Genus database with same CATH topology
 2C62 A;  3N1J A;  2M4F A;  3RA0 A;  3CM1 A;  2GID A;  2GJE A;  2GID B;  4KOQ A;  4BOD A;  2NVN A;  3R9Z A;  1L3A A;  3K44 A;  3N1I A;  4KOO A;  1PCF A;  2PHE A;  2GJE D;  2IT9 A;  3MTV A;  4KOP A;  3R9Y A;  2GIA A;  3N1H A;  4USG A;  4J38 A;  4BOB A;  2GIA B;  5FGP A;  4BF3 A;  4BXM A;  3OBH A;  4BHM A;  4AGH A;  3N1L A;  4BG7 A;  3N1K A; 
#chains in the Genus database with same CATH homology
 2C62 A;  3N1J A;  3RA0 A;  4KOQ A;  2NVN A;  3R9Z A;  1L3A A;  3N1I A;  4KOO A;  1PCF A;  2PHE A;  2IT9 A;  4KOP A;  3R9Y A;  4USG A;  3N1H A;  4BHM A;  4AGH A;  3N1L A;  4BG7 A;  3N1K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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