4AGIA

Crystal structure of fucose binding lectin from aspergillus fumigatus (afl) in complex with seleno fucoside.
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
314
structure length
312
Chain Sequence
STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords FUCOSE-SPECIFIC LECTIN FLEA
publication title A Soluble Fucose-Specific Lectin from Aspergillus Fumigatus Conidia - Structure, Specificity and Possible Role in Fungal Pathogenicity.
pubmed doi rcsb
source organism Aspergillus fumigatus
total genus 80
structure length 312
sequence length 314
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.70 Mainly Beta 6 Propeller Neuraminidase Fucose-specific lectin 4agiA00
4C1YA 4D4UA 4AGIA 4D52A 4AGTA 4CSDA 4D52C 5EO8A 4AH4A 4UOUA 1OFZA 5H47A 5EO7A 4AHAA 1IUBA 4C1YB 1IUCA 4D52B
chains in the Genus database with same CATH superfamily
5D9CA 3VNGA 4XIOA 2ZW9A 2IAXA 1W20A 3LI4A 1EUUA 4XOGA 4AH4A 4GJTA 4FPKA 4CSDA 3AMSA 4MWVA 1W1XA 2HTYA 4MC7A 2B8HA 1A14N 1V0EA 2QWCA 2QWDA 1A4GA 2W5NA 2W8BB 5H47A 3SILA 2F12A 2RKCA 1IVCA 3K37A 1N6EA 3SOBB 1V04A 2HU0A 3HLHA 1Z4XA 2VW1A 3B7EA 4FJ6A 3INBA 2IVZA 4A0PA 4YZ4A 4X6KA 4GZTA 4MWYA 3H72A 1NPEA 3G4HA 2AH2A 2IARA 4CPMA 2AEQA 3V64C 5B2CA 4CPNA 4XJUA 4FOQA 1Z4YA 4XJ8A 1SUUA 2HTUA 2AGSA 4WA4A 2YA5A 4X4AA 4FPCA 5FZNA 4IFNX 2CMLA 1NMBN 5HUKA 3OPZA 4GNCA 4SLIA 3SALA 4CPOA 2DG0A 1MS5A 3KGGA 1Z4WA 1MWEA 2YA6A 4FPEA 1H6LA 1W8NA 2F11A 4K1IA 4C1YB 4WA3A 1RWIA 4MZAA 2C4AA 1INHA 4FOVA 1MS0A 4YZ2A 3ADEA 4GZWA 4XE9A 1DILA 1XOGA 1EUSA 2VPJA 3V1SA 1RWLA 4FPOB 4L7CA 1USRA 4IMBA 3O9JA 3FVZA 1N6DA 4M4UA 5HUGA 4XJAA 4HHOA 1ZGKA 4NN9A 1INWA 1INYA 3T1EA 1VCUA 1N6FA 5GX3A 3O9KA 1NSBA 4KS4A 3S94A 2VW2A 2YDTA 3A9GA 1Q7FA 3NSSA 1S0IA 1F8BA 4XILA 4MWRA 1E1AA 2ZWAA 3U0SA 2H2NA 2F25A 4MX0A 2FHRA 1IJQA 3O4PA 1NMAN 3BEQA 3WDZA 4D52B 4UF7A 2H2UA 1Z4VA 4GDJA 4L7DA 1V0FA 2HT8A 1IVGA 2BZDA 1NSDA 4R40A 4CH9A 4N1BA 4YW3A 2IAQA 3WWAA 2FPCA 1INXA 4KS2A 4MWXA 2F28A 2ZZKA 4FPFA 2IATA 4XHBA 1XOEA 3SRGA 4GZSA 4K1KA 2HTRA 3JU4A 1PJXA 3BYCA 4AGIA 2ZB5A 1MS4A 5EO8A 4HZZA 5EO7A 5F9TA 3TC9A 3WN7A 3WW9A 4XJZA 2XCYA 3ALXA 2QWFA 1C5KA 2ISMA 4MZEA 5FNRA 4XMBA 4YZ5A 4H53A 3S2KA 4M4NA 4MWUA 1NN2A 5JYYA 1N7DA 2WOZA 1CRUA 4XIKA 5GX5A 3K36A 4GZPA 3SOVA 3CL0A 2QWJA 2VWDA 1E8VA 3HRPA 2FP9A 1IVEA 1U6DX 4KS5A 4HHQA 3K3AA 3TIAA 4FP2A 1NCBN 2BERA 2W38A 5FNUA 2ZB6A 2G8SA 2FP8A 2HTWA 1MR5A 1KITA 1S1DA 4X49A 2BF6A 2HTQA 4FOWA 4JF7A 2IAWA 2YDPA 2X9MA 1X2JA 2VSKA 1IVFA 1V3BA 4D52C 1IVDA 2F10A 2A75A 4J9TA 3P5BL 1CQ1A 2F13A 4K1HA 1B9SA 3CKZA 4YY8A 3H73A 6NN9A 1NCCN 2XZIA 4IFJA 5GX2A 2HU4A 5HX0A 4GDIA 2FPBA 2QWGA 3TI6A 1INGA 4Q6KA 3LI3A 4O5TA 1CRZA 1W8OA 1L7HA 3A72A 2HT5A 4HW6A 3K38A 5HUMA 1INFA 2VK5A 4MWLA 3ZGDA 4KS1A 4YW2A 2HTVA 4DG6A 3B69A 3DASA 3SANA 3Q6PA 1MS9A 3W09A 1QBIA 4FPGA 4GN8A 1QLGA 2XN4A 1C9UA 3LI5A 4IN4A 4FZHA 4DGRA 2GVVA 4PWZA 5FWWA 1SLLA 1NCDN 3VNHA 4B7RA 3II7A 3KYAA 4MJUA 5HUNA 1IUBA 1V2IA 4MWJA 2IASA 4GZXA 4CPYA 4CPLA 4L7BA 3TI8A 1B9VA 1S0JA 1WP5A 2F29A 3V65B 4K1JA 5NN9A 4FPYA 7NN9A 4D8SA 4YW1A 4M3MA 4XHXA 4B7NA 1F8DA 4HZXA 4YZ3A 3TI4A 2QWEA 4H52A 1MS8A 2F26A 4HIZA 2F24A 1N1VA 4QN5A 1Z50A 1BJIA 4HZYA 4FPLA 1F8EA 5D9DA 4I00A 5CGJA 2GVXA 4MWWA 2XZKA 4FQ4A 1V0ZA 3AMRA 4NCSA 1L7GA 4FPHA 3D11A 2BATA 1B9TA 1NNBA 4IFLX 2SLIA 4WEGA 2GVUA 2DG1A 4UOUA 2W8BA 4MWQA 1Z4ZA 1MZ5A 1WCSA 1S18A 1W21A 4GNBA 5GTQA 3E5ZA 4XJWA 3GVKA 2VAQA 1V3CA 2VW0A 2GVWA 4XMAA 3TICA 1W0OA 4ZY3A 3SLIA 4FPJA 1EUTA 3HLIA 4QN7A 4KS3A 2Z32A 1NSCA 2IAUA 4XMIA 1SNTA 3SREA 5D9BA 1DIMA 2QWIA 3FW0A 1NCAN 4B7JA 1NNCA 2DSOA 4QN6A 4YW5A 5FNQA 4MJVA 3ZGCA 4CPZA 4CHBA 1K32A 2YA7A 2HT7A 4HZVA 1ZI0A 3IAXA 1E8TA 4YZ1A 4QN3A 2C4LA 3NO0A 2HQSA 5GX4A 1N1YA 3A71A 3TI3A 3SOQA 3Q6TA 5GX1A 2QWAA 3ALWA 4D4UA 2F0ZA 4GZOA 3TI5A 1N1TA 4WA5A 4GN9A 4NC5A 4X47A 2W5OA 1IVBA 4K3YA 4C1YA 3TIBA 2QE8A 1POOA 2DYHA 4GN7A 4IYGA 1INVA 2YA4A 4JMLA 4GEZA 5B2DA 1USXA 4XJ9A 5FNSA 1V3EA 2JKBA 4G3NA 2F27A 2OJHA 2AEPA 4GB1A 3CYEA 1V3DA 3S8ZA 4ZLRA 4QN4A 4M4VA 1L7FA 4FOYA 4FVKA 1N1SA 4ZGCA 4QNPA 2IAPA 4XJQA 1F8CA 2IAVA 2V91A 2YA8A 4Q1UA 2QWBA 2VSMA 4B7QA 2QWHA 3NN9A 1SO7A 3H71A 1EURA 2VK6A 2XZJA 1MS3A 4GNAA 1WCQA 3A9HA 4GZQA 4HZWA 2SILA 5FNTA 4D52A 3D12A 5M1ZA 3GVJA 3L6VA 1MS1A 1X2RA 2FLUX 5FZJA 4O5SA 2IAOA 3UC1A 1NMCA 1E8UA 2SIMA 4FP3A 1SLIA 4IQKA 2P4OA 2GHSA 1OFZA 2VVZA 4WEFA 4BBWA 3G4EA 5F72C 4AHAA 2QWKA 5EX7A 1W0PA 3H6JA 4YW4A 2VK7A 3CL2A 1CVMA 3DR2A 4B7MA 4XYXA 3Q6KA 4AGTA 1A4QA 3I1CA 1VCJA 4ASCA 4XJRA 2W20A 1MZ6A 3PJQA 3S8VA 1NNAA 3K39A 2POOA 3GVLA 1IUCA
chains in the Genus database with same CATH topology
4C1YA 4D4UA 4AGIA 4D52A 4AGTA 4CSDA 4D52C 5EO8A 4AH4A 4UOUA 1OFZA 5H47A 5EO7A 4AHAA 1IUBA 4C1YB 1IUCA 4D52B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C1Y A;  4D4U A;  4AGI A;  4D52 A;  4AGT A;  4CSD A;  4D52 C;  5EO8 A;  4AH4 A;  4UOU A;  1OFZ A;  5H47 A;  5EO7 A;  4AHA A;  1IUB A;  4C1Y B;  1IUC A;  4D52 B; 
#chains in the Genus database with same CATH topology
 5D9C A;  3VNG A;  4XIO A;  2ZW9 A;  2IAX A;  1W20 A;  3LI4 A;  1EUU A;  4XOG A;  4AH4 A;  4GJT A;  4FPK A;  4CSD A;  3AMS A;  4MWV A;  1W1X A;  2HTY A;  4MC7 A;  2B8H A;  1A14 N;  1V0E A;  2QWC A;  2QWD A;  1A4G A;  2W5N A;  2W8B B;  5H47 A;  3SIL A;  2F12 A;  2RKC A;  1IVC A;  3K37 A;  1N6E A;  3SOB B;  1V04 A;  2HU0 A;  3HLH A;  1Z4X A;  2VW1 A;  3B7E A;  4FJ6 A;  3INB A;  2IVZ A;  4A0P A;  4YZ4 A;  4X6K A;  4GZT A;  4MWY A;  3H72 A;  1NPE A;  3G4H A;  2AH2 A;  2IAR A;  4CPM A;  2AEQ A;  3V64 C;  5B2C A;  4CPN A;  4XJU A;  4FOQ A;  1Z4Y A;  4XJ8 A;  1SUU A;  2HTU A;  2AGS A;  4WA4 A;  2YA5 A;  4X4A A;  4FPC A;  5FZN A;  4IFN X;  2CML A;  1NMB N;  5HUK A;  3OPZ A;  4GNC A;  4SLI A;  3SAL A;  4CPO A;  2DG0 A;  1MS5 A;  3KGG A;  1Z4W A;  1MWE A;  2YA6 A;  4FPE A;  1H6L A;  1W8N A;  2F11 A;  4K1I A;  4C1Y B;  4WA3 A;  1RWI A;  4MZA A;  2C4A A;  1INH A;  4FOV A;  1MS0 A;  4YZ2 A;  3ADE A;  4GZW A;  4XE9 A;  1DIL A;  1XOG A;  1EUS A;  2VPJ A;  3V1S A;  1RWL A;  4FPO B;  4L7C A;  1USR A;  4IMB A;  3O9J A;  3FVZ A;  1N6D A;  4M4U A;  5HUG A;  4XJA A;  4HHO A;  1ZGK A;  4NN9 A;  1INW A;  1INY A;  3T1E A;  1VCU A;  1N6F A;  5GX3 A;  3O9K A;  1NSB A;  4KS4 A;  3S94 A;  2VW2 A;  2YDT A;  3A9G A;  1Q7F A;  3NSS A;  1S0I A;  1F8B A;  4XIL A;  4MWR A;  1E1A A;  2ZWA A;  3U0S A;  2H2N A;  2F25 A;  4MX0 A;  2FHR A;  1IJQ A;  3O4P A;  1NMA N;  3BEQ A;  3WDZ A;  4D52 B;  4UF7 A;  2H2U A;  1Z4V A;  4GDJ A;  4L7D A;  1V0F A;  2HT8 A;  1IVG A;  2BZD A;  1NSD A;  4R40 A;  4CH9 A;  4N1B A;  4YW3 A;  2IAQ A;  3WWA A;  2FPC A;  1INX A;  4KS2 A;  4MWX A;  2F28 A;  2ZZK A;  4FPF A;  2IAT A;  4XHB A;  1XOE A;  3SRG A;  4GZS A;  4K1K A;  2HTR A;  3JU4 A;  1PJX A;  3BYC A;  4AGI A;  2ZB5 A;  1MS4 A;  5EO8 A;  4HZZ A;  5EO7 A;  5F9T A;  3TC9 A;  3WN7 A;  3WW9 A;  4XJZ A;  2XCY A;  3ALX A;  2QWF A;  1C5K A;  2ISM A;  4MZE A;  5FNR A;  4XMB A;  4YZ5 A;  4H53 A;  3S2K A;  4M4N A;  4MWU A;  1NN2 A;  5JYY A;  1N7D A;  2WOZ A;  1CRU A;  4XIK A;  5GX5 A;  3K36 A;  4GZP A;  3SOV A;  3CL0 A;  2QWJ A;  2VWD A;  1E8V A;  3HRP A;  2FP9 A;  1IVE A;  1U6D X;  4KS5 A;  4HHQ A;  3K3A A;  3TIA A;  4FP2 A;  1NCB N;  2BER A;  2W38 A;  5FNU A;  2ZB6 A;  2G8S A;  2FP8 A;  2HTW A;  1MR5 A;  1KIT A;  1S1D A;  4X49 A;  2BF6 A;  2HTQ A;  4FOW A;  4JF7 A;  2IAW A;  2YDP A;  2X9M A;  1X2J A;  2VSK A;  1IVF A;  1V3B A;  4D52 C;  1IVD A;  2F10 A;  2A75 A;  4J9T A;  3P5B L;  1CQ1 A;  2F13 A;  4K1H A;  1B9S A;  3CKZ A;  4YY8 A;  3H73 A;  6NN9 A;  1NCC N;  2XZI A;  4IFJ A;  5GX2 A;  2HU4 A;  5HX0 A;  4GDI A;  2FPB A;  2QWG A;  3TI6 A;  1ING A;  4Q6K A;  3LI3 A;  4O5T A;  1CRZ A;  1W8O A;  1L7H A;  3A72 A;  2HT5 A;  4HW6 A;  3K38 A;  5HUM A;  1INF A;  2VK5 A;  4MWL A;  3ZGD A;  4KS1 A;  4YW2 A;  2HTV A;  4DG6 A;  3B69 A;  3DAS A;  3SAN A;  3Q6P A;  1MS9 A;  3W09 A;  1QBI A;  4FPG A;  4GN8 A;  1QLG A;  2XN4 A;  1C9U A;  3LI5 A;  4IN4 A;  4FZH A;  4DGR A;  2GVV A;  4PWZ A;  5FWW A;  1SLL A;  1NCD N;  3VNH A;  4B7R A;  3II7 A;  3KYA A;  4MJU A;  5HUN A;  1IUB A;  1V2I A;  4MWJ A;  2IAS A;  4GZX A;  4CPY A;  4CPL A;  4L7B A;  3TI8 A;  1B9V A;  1S0J A;  1WP5 A;  2F29 A;  3V65 B;  4K1J A;  5NN9 A;  4FPY A;  7NN9 A;  4D8S A;  4YW1 A;  4M3M A;  4XHX A;  4B7N A;  1F8D A;  4HZX A;  4YZ3 A;  3TI4 A;  2QWE A;  4H52 A;  1MS8 A;  2F26 A;  4HIZ A;  2F24 A;  1N1V A;  4QN5 A;  1Z50 A;  1BJI A;  4HZY A;  4FPL A;  1F8E A;  5D9D A;  4I00 A;  5CGJ A;  2GVX A;  4MWW A;  2XZK A;  4FQ4 A;  1V0Z A;  3AMR A;  4NCS A;  1L7G A;  4FPH A;  3D11 A;  2BAT A;  1B9T A;  1NNB A;  4IFL X;  2SLI A;  4WEG A;  2GVU A;  2DG1 A;  4UOU A;  2W8B A;  4MWQ A;  1Z4Z A;  1MZ5 A;  1WCS A;  1S18 A;  1W21 A;  4GNB A;  5GTQ A;  3E5Z A;  4XJW A;  3GVK A;  2VAQ A;  1V3C A;  2VW0 A;  2GVW A;  4XMA A;  3TIC A;  1W0O A;  4ZY3 A;  3SLI A;  4FPJ A;  1EUT A;  3HLI A;  4QN7 A;  4KS3 A;  2Z32 A;  1NSC A;  2IAU A;  4XMI A;  1SNT A;  3SRE A;  5D9B A;  1DIM A;  2QWI A;  3FW0 A;  1NCA N;  4B7J A;  1NNC A;  2DSO A;  4QN6 A;  4YW5 A;  5FNQ A;  4MJV A;  3ZGC A;  4CPZ A;  4CHB A;  1K32 A;  2YA7 A;  2HT7 A;  4HZV A;  1ZI0 A;  3IAX A;  1E8T A;  4YZ1 A;  4QN3 A;  2C4L A;  3NO0 A;  2HQS A;  5GX4 A;  1N1Y A;  3A71 A;  3TI3 A;  3SOQ A;  3Q6T A;  5GX1 A;  2QWA A;  3ALW A;  4D4U A;  2F0Z A;  4GZO A;  3TI5 A;  1N1T A;  4WA5 A;  4GN9 A;  4NC5 A;  4X47 A;  2W5O A;  1IVB A;  4K3Y A;  4C1Y A;  3TIB A;  2QE8 A;  1POO A;  2DYH A;  4GN7 A;  4IYG A;  1INV A;  2YA4 A;  4JML A;  4GEZ A;  5B2D A;  1USX A;  4XJ9 A;  5FNS A;  1V3E A;  2JKB A;  4G3N A;  2F27 A;  2OJH A;  2AEP A;  4GB1 A;  3CYE A;  1V3D A;  3S8Z A;  4ZLR A;  4QN4 A;  4M4V A;  1L7F A;  4FOY A;  4FVK A;  1N1S A;  4ZGC A;  4QNP A;  2IAP A;  4XJQ A;  1F8C A;  2IAV A;  2V91 A;  2YA8 A;  4Q1U A;  2QWB A;  2VSM A;  4B7Q A;  2QWH A;  3NN9 A;  1SO7 A;  3H71 A;  1EUR A;  2VK6 A;  2XZJ A;  1MS3 A;  4GNA A;  1WCQ A;  3A9H A;  4GZQ A;  4HZW A;  2SIL A;  5FNT A;  4D52 A;  3D12 A;  5M1Z A;  3GVJ A;  3L6V A;  1MS1 A;  1X2R A;  2FLU X;  5FZJ A;  4O5S A;  2IAO A;  3UC1 A;  1NMC A;  1E8U A;  2SIM A;  4FP3 A;  1SLI A;  4IQK A;  2P4O A;  2GHS A;  1OFZ A;  2VVZ A;  4WEF A;  4BBW A;  3G4E A;  5F72 C;  4AHA A;  2QWK A;  5EX7 A;  1W0P A;  3H6J A;  4YW4 A;  2VK7 A;  3CL2 A;  1CVM A;  3DR2 A;  4B7M A;  4XYX A;  3Q6K A;  4AGT A;  1A4Q A;  3I1C A;  1VCJ A;  4ASC A;  4XJR A;  2W20 A;  1MZ6 A;  3PJQ A;  3S8V A;  1NNA A;  3K39 A;  2POO A;  3GVL A;  1IUC A; 
#chains in the Genus database with same CATH homology
 4C1Y A;  4D4U A;  4AGI A;  4D52 A;  4AGT A;  4CSD A;  4D52 C;  5EO8 A;  4AH4 A;  4UOU A;  1OFZ A;  5H47 A;  5EO7 A;  4AHA A;  1IUB A;  4C1Y B;  1IUC A;  4D52 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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