4AI4A

Crystal structure of e38q mutant of 3-methyladenine dna glycosylase i from staphylococcus aureus
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
186
structure length
186
Chain Sequence
MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALQSQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCPSKPKHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-3-METHYLADENINE GLYCOSYLASE I
publication title A Model for 3-Methyladenine Recognition by 3-Methyladenine DNA Glycosylase I (Tag) from Staphylococcus Aureus.
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus mssa476
molecule tags Hydrolase
total genus 75
structure length 186
sequence length 186
ec nomenclature ec 3.2.2.20: DNA-3-methyladenine glycosylase I.
pdb deposition date 2012-02-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4ai4A00
3CW7A 3CWAA 4AI4A 1N39A 3IHOA 4YPRA 4EA5A 2NOIA 3CVTA 1PU8A 1ORPA 1N3AA 2JG6A 2NOHA 1M3HA 4UNFA 5AN4A 3KNTA 2I5WA 2NOLA 2XHIA 1RRSA 1MUNA 4E9FA 3I0WA 4OFAA 3OH9A 3FHFA 2OFIA 1XG7A 5CHZA 3CWUA 1YQLA 1FN7A 1KEAA 4EA4A 1HU0A 2YG9A 4AIAA 3CWTA 4EJZA 3CVSA 4E9GA 5DPKA 1YQMA 3OGDA 4EJYA 4E9EA 1NGNA 2ABKA 1ORNA 5KN9A 2OFKA 1M3QA 1KG7A 3OH6A 2H56A 1NKUA 1MPGA 1PU7A 3N0UA 3FHGA 1WEGA 4UOBA 4EVVA 2NOBA 1KG5A 4EW0A 3IH7A 3F0ZA 2JHNA 1PU6A 1LWVA 4OFEA 2NOEA 1EBMA 1WEIA 1VRLA 1DIZA 5KN8A 3I0XA 3FSPA 1P7MA 1LWYA 1YQRA 1KG2A 4DK9A 4B21A 1YQKA 1RRQA 1XQOA 2NOFA 2JHJA 1KG6A 1LMZA 1P59A 4EW4A 4PIIA 1MUYA 4AI5A 1KG3A 4B24A 4YPHA 1KQJA 1KO9A 1KG4A 4HSBA 3N5NX 4B22A 3CWSA 1WEFA 2NOZA 2YG8A 3F10A 3D4VA 3KTUA 1N3CA 4OFHA 3S6IA 4B23A 1LWWA 1MUDA 4YOQA 4E9HA 3G0QA 1XQPA 1PVSA
chains in the Genus database with same CATH superfamily
3CW7A 3CWAA 4BACA 4AI4A 3OYNA 3VW4A 1N39A 4YPRA 3IHOA 4EA5A 2NOIA 4BDYA 3CVTA 1PU8A 3S3MA 1ORPA 1N3AA 2JG6A 2NOHA 4E7KA 1M3HA 4UNFA 5AN4A 3KNTA 2I5WA 2NOLA 4E7IA 3G0QA 2XHIA 1RRSA 1MUNA 4E7JA 4BE2A 3OYAA 3I0WA 4E9FA 4OFAA 3OYFA 3OH9A 3FHFA 4BDZA 2OFIA 1XG7A 5CHZA 4ZTJA 3CWUA 3OYLA 1YQLA 1FN7A 2JPSA 1KEAA 4EA4A 1HU0A 2YG9A 4AIAA 3CWTA 4EJZA 3CVSA 4E9GA 5DPKA 1YQMA 3OS2A 3OGDA 2V75A 4EJYA 4E9EA 1NGNA 2ABKA 3OS1A 5KN9A 1ORNA 2OFKA 1M3QA 4BE1A 1KG7A 3OH6A 2H56A 1NKUA 5FROA 1MPGA 3NNQA 5FRNA 1PU7A 3N0UA 3FHGA 1WEGA 4UOBA 4NZGA 4EVVA 3L2WA 2NOBA 2W03A 1KG5A 4EW0A 3IH7A 3F0ZA 2JHNA 1PU6A 1LWVA 4OFEA 3OYBA 3R2XC 2NOEA 3OYEA 1EBMA 1WEIA 4ZTFA 3LCNA 3OYCA 3OYIA 3L2RA 1VRLA 5KN8A 1DIZA 3I0XA 3FSPA 1P7MA 1LWYA 1YQRA 1KG2A 4DK9A 4B21A 1YQKA 1RRQA 1XQOA 3L2VA 3S3NA 3L2UA 2NOFA 2JHJA 1PVSA 3OYJA 3OS0A 1KG6A 1LMZA 3OYKA 1P59A 4IKFA 4E7LA 4EW4A 4PIIA 5FRMA 4BE0A 1MUYA 4AI5A 3OY9A 3OYHA 1KG3A 1U84A 4B24A 4YPHA 1KQJA 1KO9A 1KG4A 4HSBA 3N5NX 4B22A 3CWSA 4E7HA 3L2QA 3S3OA 3OYDA 1WEFA 2NOZA 2YG8A 3F10A 3D4VA 3KTUA 1N3CA 4OFHA 3S6IA 4B23A 1LWWA 1MUDA 2W04A 4YOQA 4E9HA 3OYGA 1XQPA 3OYMA
chains in the Genus database with same CATH topology
3CW7A 3CWAA 4AI4A 1N39A 3IHOA 4YPRA 4EA5A 2NOIA 3CVTA 1PU8A 1ORPA 1N3AA 2JG6A 2NOHA 1M3HA 4UNFA 5AN4A 3KNTA 2I5WA 2NOLA 2XHIA 1RRSA 1MUNA 4E9FA 3I0WA 4OFAA 3OH9A 3FHFA 2OFIA 1XG7A 5CHZA 3CWUA 1YQLA 1FN7A 1KEAA 4EA4A 1HU0A 2YG9A 4AIAA 3CWTA 4EJZA 3CVSA 4E9GA 5DPKA 1YQMA 3OGDA 4EJYA 4E9EA 1NGNA 2ABKA 1ORNA 5KN9A 2OFKA 1M3QA 1KG7A 3OH6A 2H56A 1NKUA 1MPGA 1PU7A 3N0UA 3FHGA 1WEGA 4UOBA 4EVVA 2NOBA 1KG5A 4EW0A 3IH7A 3F0ZA 2JHNA 1PU6A 1LWVA 4OFEA 2NOEA 1EBMA 1WEIA 1VRLA 1DIZA 5KN8A 3I0XA 3FSPA 1P7MA 1LWYA 1YQRA 1KG2A 4DK9A 4B21A 1YQKA 1RRQA 1XQOA 2NOFA 2JHJA 1KG6A 1LMZA 1P59A 4EW4A 4PIIA 1MUYA 4AI5A 1KG3A 4B24A 4YPHA 1KQJA 1KO9A 1KG4A 4HSBA 3N5NX 4B22A 3CWSA 1WEFA 2NOZA 2YG8A 3F10A 3D4VA 3KTUA 1N3CA 4OFHA 3S6IA 4B23A 1LWWA 1MUDA 4YOQA 4E9HA 3G0QA 1XQPA 1PVSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CW7 A;  3CWA A;  4AI4 A;  1N39 A;  3IHO A;  4YPR A;  4EA5 A;  2NOI A;  3CVT A;  1PU8 A;  1ORP A;  1N3A A;  2JG6 A;  2NOH A;  1M3H A;  4UNF A;  5AN4 A;  3KNT A;  2I5W A;  2NOL A;  2XHI A;  1RRS A;  1MUN A;  4E9F A;  3I0W A;  4OFA A;  3OH9 A;  3FHF A;  2OFI A;  1XG7 A;  5CHZ A;  3CWU A;  1YQL A;  1FN7 A;  1KEA A;  4EA4 A;  1HU0 A;  2YG9 A;  4AIA A;  3CWT A;  4EJZ A;  3CVS A;  4E9G A;  5DPK A;  1YQM A;  3OGD A;  4EJY A;  4E9E A;  1NGN A;  2ABK A;  1ORN A;  5KN9 A;  2OFK A;  1M3Q A;  1KG7 A;  3OH6 A;  2H56 A;  1NKU A;  1MPG A;  1PU7 A;  3N0U A;  3FHG A;  1WEG A;  4UOB A;  4EVV A;  2NOB A;  1KG5 A;  4EW0 A;  3IH7 A;  3F0Z A;  2JHN A;  1PU6 A;  1LWV A;  4OFE A;  2NOE A;  1EBM A;  1WEI A;  1VRL A;  1DIZ A;  5KN8 A;  3I0X A;  3FSP A;  1P7M A;  1LWY A;  1YQR A;  1KG2 A;  4DK9 A;  4B21 A;  1YQK A;  1RRQ A;  1XQO A;  2NOF A;  2JHJ A;  1KG6 A;  1LMZ A;  1P59 A;  4EW4 A;  4PII A;  1MUY A;  4AI5 A;  1KG3 A;  4B24 A;  4YPH A;  1KQJ A;  1KO9 A;  1KG4 A;  4HSB A;  3N5N X;  4B22 A;  3CWS A;  1WEF A;  2NOZ A;  2YG8 A;  3F10 A;  3D4V A;  3KTU A;  1N3C A;  4OFH A;  3S6I A;  4B23 A;  1LWW A;  1MUD A;  4YOQ A;  4E9H A;  3G0Q A;  1XQP A;  1PVS A; 
#chains in the Genus database with same CATH topology
 3CW7 A;  3CWA A;  4BAC A;  4AI4 A;  3OYN A;  3VW4 A;  1N39 A;  4YPR A;  3IHO A;  4EA5 A;  2NOI A;  4BDY A;  3CVT A;  1PU8 A;  3S3M A;  1ORP A;  1N3A A;  2JG6 A;  2NOH A;  4E7K A;  1M3H A;  4UNF A;  5AN4 A;  3KNT A;  2I5W A;  2NOL A;  4E7I A;  3G0Q A;  2XHI A;  1RRS A;  1MUN A;  4E7J A;  4BE2 A;  3OYA A;  3I0W A;  4E9F A;  4OFA A;  3OYF A;  3OH9 A;  3FHF A;  4BDZ A;  2OFI A;  1XG7 A;  5CHZ A;  4ZTJ A;  3CWU A;  3OYL A;  1YQL A;  1FN7 A;  2JPS A;  1KEA A;  4EA4 A;  1HU0 A;  2YG9 A;  4AIA A;  3CWT A;  4EJZ A;  3CVS A;  4E9G A;  5DPK A;  1YQM A;  3OS2 A;  3OGD A;  2V75 A;  4EJY A;  4E9E A;  1NGN A;  2ABK A;  3OS1 A;  5KN9 A;  1ORN A;  2OFK A;  1M3Q A;  4BE1 A;  1KG7 A;  3OH6 A;  2H56 A;  1NKU A;  5FRO A;  1MPG A;  3NNQ A;  5FRN A;  1PU7 A;  3N0U A;  3FHG A;  1WEG A;  4UOB A;  4NZG A;  4EVV A;  3L2W A;  2NOB A;  2W03 A;  1KG5 A;  4EW0 A;  3IH7 A;  3F0Z A;  2JHN A;  1PU6 A;  1LWV A;  4OFE A;  3OYB A;  3R2X C;  2NOE A;  3OYE A;  1EBM A;  1WEI A;  4ZTF A;  3LCN A;  3OYC A;  3OYI A;  3L2R A;  1VRL A;  5KN8 A;  1DIZ A;  3I0X A;  3FSP A;  1P7M A;  1LWY A;  1YQR A;  1KG2 A;  4DK9 A;  4B21 A;  1YQK A;  1RRQ A;  1XQO A;  3L2V A;  3S3N A;  3L2U A;  2NOF A;  2JHJ A;  1PVS A;  3OYJ A;  3OS0 A;  1KG6 A;  1LMZ A;  3OYK A;  1P59 A;  4IKF A;  4E7L A;  4EW4 A;  4PII A;  5FRM A;  4BE0 A;  1MUY A;  4AI5 A;  3OY9 A;  3OYH A;  1KG3 A;  1U84 A;  4B24 A;  4YPH A;  1KQJ A;  1KO9 A;  1KG4 A;  4HSB A;  3N5N X;  4B22 A;  3CWS A;  4E7H A;  3L2Q A;  3S3O A;  3OYD A;  1WEF A;  2NOZ A;  2YG8 A;  3F10 A;  3D4V A;  3KTU A;  1N3C A;  4OFH A;  3S6I A;  4B23 A;  1LWW A;  1MUD A;  2W04 A;  4YOQ A;  4E9H A;  3OYG A;  1XQP A;  3OYM A; 
#chains in the Genus database with same CATH homology
 3CW7 A;  3CWA A;  4AI4 A;  1N39 A;  3IHO A;  4YPR A;  4EA5 A;  2NOI A;  3CVT A;  1PU8 A;  1ORP A;  1N3A A;  2JG6 A;  2NOH A;  1M3H A;  4UNF A;  5AN4 A;  3KNT A;  2I5W A;  2NOL A;  2XHI A;  1RRS A;  1MUN A;  4E9F A;  3I0W A;  4OFA A;  3OH9 A;  3FHF A;  2OFI A;  1XG7 A;  5CHZ A;  3CWU A;  1YQL A;  1FN7 A;  1KEA A;  4EA4 A;  1HU0 A;  2YG9 A;  4AIA A;  3CWT A;  4EJZ A;  3CVS A;  4E9G A;  5DPK A;  1YQM A;  3OGD A;  4EJY A;  4E9E A;  1NGN A;  2ABK A;  1ORN A;  5KN9 A;  2OFK A;  1M3Q A;  1KG7 A;  3OH6 A;  2H56 A;  1NKU A;  1MPG A;  1PU7 A;  3N0U A;  3FHG A;  1WEG A;  4UOB A;  4EVV A;  2NOB A;  1KG5 A;  4EW0 A;  3IH7 A;  3F0Z A;  2JHN A;  1PU6 A;  1LWV A;  4OFE A;  2NOE A;  1EBM A;  1WEI A;  1VRL A;  1DIZ A;  5KN8 A;  3I0X A;  3FSP A;  1P7M A;  1LWY A;  1YQR A;  1KG2 A;  4DK9 A;  4B21 A;  1YQK A;  1RRQ A;  1XQO A;  2NOF A;  2JHJ A;  1KG6 A;  1LMZ A;  1P59 A;  4EW4 A;  4PII A;  1MUY A;  4AI5 A;  1KG3 A;  4B24 A;  4YPH A;  1KQJ A;  1KO9 A;  1KG4 A;  4HSB A;  3N5N X;  4B22 A;  3CWS A;  1WEF A;  2NOZ A;  2YG8 A;  3F10 A;  3D4V A;  3KTU A;  1N3C A;  4OFH A;  3S6I A;  4B23 A;  1LWW A;  1MUD A;  4YOQ A;  4E9H A;  3G0Q A;  1XQP A;  1PVS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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