4AI4A

Crystal structure of e38q mutant of 3-methyladenine dna glycosylase i from staphylococcus aureus
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
186
structure length
186
Chain Sequence
MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALQSQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCPSKPKHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DNA-3-METHYLADENINE GLYCOSYLASE I
publication title A Model for 3-Methyladenine Recognition by 3-Methyladenine DNA Glycosylase I (Tag) from Staphylococcus Aureus.
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus mssa476
total genus 75
structure length 186
sequence length 186
ec nomenclature ec 3.2.2.20: DNA-3-methyladenine glycosylase I.
pdb deposition date 2012-02-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4ai4A00
1YQKA 1P7MA 2NOIA 1KG7A 1KEAA 2JHJA 1KG4A 3F0ZA 1MPGA 2YG9A 1ORPA 4B21A 5KN9A 4OFEA 1FN7A 1LWWA 4E9EA 1NGNA 4E9HA 1KG5A 2OFIA 4OFHA 1RRQA 3CWSA 4UOBA 3I0XA 1P59A 3G0QA 1M3QA 1M3HA 1RRSA 3CW7A 3CVSA 2NOHA 3D4VA 3OGDA 1KQJA 3OH9A 3CWAA 2YG8A 3S6IA 2JHNA 1XQOA 3KNTA 1ORNA 4EJYA 4YPHA 4E9GA 1VRLA 4YOQA 3N5NX 1MUDA 4EA4A 5KN8A 4B22A 1MUYA 2XHIA 4PIIA 1KO9A 1DIZA 3FSPA 2I5WA 4EVVA 4B23A 1YQMA 3FHFA 4OFAA 2ABKA 3IHOA 2NOBA 3CVTA 4AIAA 3F10A 2JG6A 1XQPA 3I0WA 1KG3A 4EJZA 4EW4A 3N0UA 1KG6A 4AI5A 4AI4A 3CWUA 5CHZA 2NOEA 2NOLA 4EW0A 2H56A 1LWVA 1NKUA 1PU8A 1WEFA 4B24A 1LMZA 1WEGA 2OFKA 4HSBA 2NOFA 1HU0A 1YQLA 1EBMA 1PU7A 4EA5A 1N3AA 1PVSA 4UNFA 3CWTA 3IH7A 2NOZA 1XG7A 5AN4A 1N39A 1LWYA 1MUNA 3FHGA 5DPKA 1PU6A 1WEIA 4DK9A 4YPRA 3OH6A 3KTUA 1YQRA 1KG2A 1N3CA 4E9FA
chains in the Genus database with same CATH superfamily
1YQKA 1P7MA 5FRNA 2NOIA 1KG7A 1KEAA 2JHJA 1KG4A 3OYEA 2W03A 3F0ZA 4NZGA 3OY9A 3NNQA 1MPGA 3OYMA 2YG9A 1ORPA 3LCNA 4B21A 2JPSA 5KN9A 3S3NA 4OFEA 1FN7A 1LWWA 4E9EA 1NGNA 4E9HA 1KG5A 2OFIA 4OFHA 4E7LA 3L2WA 1RRQA 3CWSA 4UOBA 3I0XA 3OS1A 4BE2A 1P59A 1U84A 3G0QA 1M3QA 1M3HA 1RRSA 3CW7A 3CVSA 2NOHA 3D4VA 3OGDA 1KQJA 3OH9A 3CWAA 2YG8A 3S3OA 2JHNA 3S6IA 1XQOA 3KNTA 1ORNA 4BACA 4EJYA 4YPHA 3OS2A 4E9GA 1VRLA 4E7JA 4YOQA 4ZTFA 3N5NX 1MUDA 4EA4A 5KN8A 4B22A 1MUYA 2XHIA 3L2VA 4BDYA 4BE1A 3L2RA 4PIIA 4BDZA 1KO9A 1DIZA 3FSPA 2I5WA 5FRMA 4EVVA 4IKFA 4B23A 1YQMA 3FHFA 4BE0A 4OFAA 2ABKA 3OYDA 3OYKA 5FROA 3OYBA 3IHOA 2NOBA 3CVTA 3OYCA 4E7KA 4AIAA 3F10A 2JG6A 3L2UA 1XQPA 3I0WA 4E7IA 1KG3A 4EJZA 4EW4A 3N0UA 1KG6A 4AI5A 4AI4A 3OYHA 3CWUA 3OYJA 5CHZA 2NOEA 2NOLA 4EW0A 2H56A 4ZTJA 1LWVA 1NKUA 1PU8A 1WEFA 3R2XC 1LMZA 4B24A 3OYLA 1WEGA 2OFKA 4HSBA 2NOFA 1HU0A 1YQLA 1EBMA 1PU7A 4EA5A 1N3AA 1PVSA 4UNFA 3OYFA 3S3MA 3CWTA 3L2QA 3IH7A 2NOZA 3OYIA 3VW4A 1XG7A 5AN4A 3OS0A 1N39A 1LWYA 1MUNA 3OYAA 4E7HA 3FHGA 5DPKA 2W04A 1PU6A 1WEIA 4DK9A 4YPRA 3OH6A 3OYNA 3KTUA 2V75A 1YQRA 1KG2A 1N3CA 4E9FA 3OYGA
chains in the Genus database with same CATH topology
1YQKA 1P7MA 2NOIA 1KG7A 1KEAA 2JHJA 1KG4A 3F0ZA 1MPGA 2YG9A 1ORPA 4B21A 5KN9A 4OFEA 1FN7A 1LWWA 4E9EA 1NGNA 4E9HA 1KG5A 2OFIA 4OFHA 1RRQA 3CWSA 4UOBA 3I0XA 1P59A 3G0QA 1M3QA 1M3HA 1RRSA 3CW7A 3CVSA 2NOHA 3D4VA 3OGDA 1KQJA 3OH9A 3CWAA 2YG8A 3S6IA 2JHNA 1XQOA 3KNTA 1ORNA 4EJYA 4YPHA 4E9GA 1VRLA 4YOQA 3N5NX 1MUDA 4EA4A 5KN8A 4B22A 1MUYA 2XHIA 4PIIA 1KO9A 1DIZA 3FSPA 2I5WA 4EVVA 4B23A 1YQMA 3FHFA 4OFAA 2ABKA 3IHOA 2NOBA 3CVTA 4AIAA 3F10A 2JG6A 1XQPA 3I0WA 1KG3A 4EJZA 4EW4A 3N0UA 1KG6A 4AI5A 4AI4A 3CWUA 5CHZA 2NOEA 2NOLA 4EW0A 2H56A 1LWVA 1NKUA 1PU8A 1WEFA 4B24A 1LMZA 1WEGA 2OFKA 4HSBA 2NOFA 1HU0A 1YQLA 1EBMA 1PU7A 4EA5A 1N3AA 1PVSA 4UNFA 3CWTA 3IH7A 2NOZA 1XG7A 5AN4A 1N39A 1LWYA 1MUNA 3FHGA 5DPKA 1PU6A 1WEIA 4DK9A 4YPRA 3OH6A 3KTUA 1YQRA 1KG2A 1N3CA 4E9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQK A;  1P7M A;  2NOI A;  1KG7 A;  1KEA A;  2JHJ A;  1KG4 A;  3F0Z A;  1MPG A;  2YG9 A;  1ORP A;  4B21 A;  5KN9 A;  4OFE A;  1FN7 A;  1LWW A;  4E9E A;  1NGN A;  4E9H A;  1KG5 A;  2OFI A;  4OFH A;  1RRQ A;  3CWS A;  4UOB A;  3I0X A;  1P59 A;  3G0Q A;  1M3Q A;  1M3H A;  1RRS A;  3CW7 A;  3CVS A;  2NOH A;  3D4V A;  3OGD A;  1KQJ A;  3OH9 A;  3CWA A;  2YG8 A;  3S6I A;  2JHN A;  1XQO A;  3KNT A;  1ORN A;  4EJY A;  4YPH A;  4E9G A;  1VRL A;  4YOQ A;  3N5N X;  1MUD A;  4EA4 A;  5KN8 A;  4B22 A;  1MUY A;  2XHI A;  4PII A;  1KO9 A;  1DIZ A;  3FSP A;  2I5W A;  4EVV A;  4B23 A;  1YQM A;  3FHF A;  4OFA A;  2ABK A;  3IHO A;  2NOB A;  3CVT A;  4AIA A;  3F10 A;  2JG6 A;  1XQP A;  3I0W A;  1KG3 A;  4EJZ A;  4EW4 A;  3N0U A;  1KG6 A;  4AI5 A;  4AI4 A;  3CWU A;  5CHZ A;  2NOE A;  2NOL A;  4EW0 A;  2H56 A;  1LWV A;  1NKU A;  1PU8 A;  1WEF A;  4B24 A;  1LMZ A;  1WEG A;  2OFK A;  4HSB A;  2NOF A;  1HU0 A;  1YQL A;  1EBM A;  1PU7 A;  4EA5 A;  1N3A A;  1PVS A;  4UNF A;  3CWT A;  3IH7 A;  2NOZ A;  1XG7 A;  5AN4 A;  1N39 A;  1LWY A;  1MUN A;  3FHG A;  5DPK A;  1PU6 A;  1WEI A;  4DK9 A;  4YPR A;  3OH6 A;  3KTU A;  1YQR A;  1KG2 A;  1N3C A;  4E9F A; 
#chains in the Genus database with same CATH topology
 1YQK A;  1P7M A;  5FRN A;  2NOI A;  1KG7 A;  1KEA A;  2JHJ A;  1KG4 A;  3OYE A;  2W03 A;  3F0Z A;  4NZG A;  3OY9 A;  3NNQ A;  1MPG A;  3OYM A;  2YG9 A;  1ORP A;  3LCN A;  4B21 A;  2JPS A;  5KN9 A;  3S3N A;  4OFE A;  1FN7 A;  1LWW A;  4E9E A;  1NGN A;  4E9H A;  1KG5 A;  2OFI A;  4OFH A;  4E7L A;  3L2W A;  1RRQ A;  3CWS A;  4UOB A;  3I0X A;  3OS1 A;  4BE2 A;  1P59 A;  1U84 A;  3G0Q A;  1M3Q A;  1M3H A;  1RRS A;  3CW7 A;  3CVS A;  2NOH A;  3D4V A;  3OGD A;  1KQJ A;  3OH9 A;  3CWA A;  2YG8 A;  3S3O A;  2JHN A;  3S6I A;  1XQO A;  3KNT A;  1ORN A;  4BAC A;  4EJY A;  4YPH A;  3OS2 A;  4E9G A;  1VRL A;  4E7J A;  4YOQ A;  4ZTF A;  3N5N X;  1MUD A;  4EA4 A;  5KN8 A;  4B22 A;  1MUY A;  2XHI A;  3L2V A;  4BDY A;  4BE1 A;  3L2R A;  4PII A;  4BDZ A;  1KO9 A;  1DIZ A;  3FSP A;  2I5W A;  5FRM A;  4EVV A;  4IKF A;  4B23 A;  1YQM A;  3FHF A;  4BE0 A;  4OFA A;  2ABK A;  3OYD A;  3OYK A;  5FRO A;  3OYB A;  3IHO A;  2NOB A;  3CVT A;  3OYC A;  4E7K A;  4AIA A;  3F10 A;  2JG6 A;  3L2U A;  1XQP A;  3I0W A;  4E7I A;  1KG3 A;  4EJZ A;  4EW4 A;  3N0U A;  1KG6 A;  4AI5 A;  4AI4 A;  3OYH A;  3CWU A;  3OYJ A;  5CHZ A;  2NOE A;  2NOL A;  4EW0 A;  2H56 A;  4ZTJ A;  1LWV A;  1NKU A;  1PU8 A;  1WEF A;  3R2X C;  1LMZ A;  4B24 A;  3OYL A;  1WEG A;  2OFK A;  4HSB A;  2NOF A;  1HU0 A;  1YQL A;  1EBM A;  1PU7 A;  4EA5 A;  1N3A A;  1PVS A;  4UNF A;  3OYF A;  3S3M A;  3CWT A;  3L2Q A;  3IH7 A;  2NOZ A;  3OYI A;  3VW4 A;  1XG7 A;  5AN4 A;  3OS0 A;  1N39 A;  1LWY A;  1MUN A;  3OYA A;  4E7H A;  3FHG A;  5DPK A;  2W04 A;  1PU6 A;  1WEI A;  4DK9 A;  4YPR A;  3OH6 A;  3OYN A;  3KTU A;  2V75 A;  1YQR A;  1KG2 A;  1N3C A;  4E9F A;  3OYG A; 
#chains in the Genus database with same CATH homology
 1YQK A;  1P7M A;  2NOI A;  1KG7 A;  1KEA A;  2JHJ A;  1KG4 A;  3F0Z A;  1MPG A;  2YG9 A;  1ORP A;  4B21 A;  5KN9 A;  4OFE A;  1FN7 A;  1LWW A;  4E9E A;  1NGN A;  4E9H A;  1KG5 A;  2OFI A;  4OFH A;  1RRQ A;  3CWS A;  4UOB A;  3I0X A;  1P59 A;  3G0Q A;  1M3Q A;  1M3H A;  1RRS A;  3CW7 A;  3CVS A;  2NOH A;  3D4V A;  3OGD A;  1KQJ A;  3OH9 A;  3CWA A;  2YG8 A;  3S6I A;  2JHN A;  1XQO A;  3KNT A;  1ORN A;  4EJY A;  4YPH A;  4E9G A;  1VRL A;  4YOQ A;  3N5N X;  1MUD A;  4EA4 A;  5KN8 A;  4B22 A;  1MUY A;  2XHI A;  4PII A;  1KO9 A;  1DIZ A;  3FSP A;  2I5W A;  4EVV A;  4B23 A;  1YQM A;  3FHF A;  4OFA A;  2ABK A;  3IHO A;  2NOB A;  3CVT A;  4AIA A;  3F10 A;  2JG6 A;  1XQP A;  3I0W A;  1KG3 A;  4EJZ A;  4EW4 A;  3N0U A;  1KG6 A;  4AI5 A;  4AI4 A;  3CWU A;  5CHZ A;  2NOE A;  2NOL A;  4EW0 A;  2H56 A;  1LWV A;  1NKU A;  1PU8 A;  1WEF A;  4B24 A;  1LMZ A;  1WEG A;  2OFK A;  4HSB A;  2NOF A;  1HU0 A;  1YQL A;  1EBM A;  1PU7 A;  4EA5 A;  1N3A A;  1PVS A;  4UNF A;  3CWT A;  3IH7 A;  2NOZ A;  1XG7 A;  5AN4 A;  1N39 A;  1LWY A;  1MUN A;  3FHG A;  5DPK A;  1PU6 A;  1WEI A;  4DK9 A;  4YPR A;  3OH6 A;  3KTU A;  1YQR A;  1KG2 A;  1N3C A;  4E9F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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