4AI4A

Crystal structure of e38q mutant of 3-methyladenine dna glycosylase i from staphylococcus aureus
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
186
structure length
186
Chain Sequence
MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALQSQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCPSKPKHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Staphylococcus aureus subsp. aureus mssa476
publication title A Model for 3-Methyladenine Recognition by 3-Methyladenine DNA Glycosylase I (Tag) from Staphylococcus Aureus.
pubmed doi rcsb
molecule keywords DNA-3-METHYLADENINE GLYCOSYLASE I
total genus 75
structure length 186
sequence length 186
ec nomenclature ec 3.2.2.20: DNA-3-methyladenine glycosylase I.
pdb deposition date 2012-02-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4ai4A00
1PU7A 2YG9A 1RRQA 1WEIA 1VRLA 3I0XA 3CVSA 3OH9A 4EW0A 4AI4A 1MUNA 1LWVA 4OFHA 4PIIA 4EA4A 4DK9A 1LWWA 1LWYA 1N3AA 1KEAA 1MUDA 1WEFA 2OFIA 1PU8A 1RRSA 3KNTA 2NOHA 1XG7A 4YOQA 5DPKA 5KN8A 1LMZA 4E9FA 1N3CA 1KG4A 1ORPA 1PU6A 4UNFA 1KG6A 1XQPA 3FHFA 3F10A 3F0ZA 2NOLA 1YQKA 2H56A 4E9HA 3I0WA 2YG8A 1YQMA 1NKUA 3N5NX 1KG7A 1EBMA 4B24A 4B23A 3CWUA 4OFEA 2XHIA 1KQJA 4EJZA 4HSBA 1KO9A 3N0UA 4E9EA 4EW4A 4B21A 4E9GA 5AN4A 2JG6A 3CW7A 2NOIA 3S6IA 3FSPA 2NOBA 3CWTA 1YQLA 2ABKA 1M3QA 4AI5A 1P59A 1NGNA 4OFAA 2JHJA 2I5WA 1MPGA 1WEGA 3CWAA 1PVSA 3KTUA 2NOEA 3IHOA 2JHNA 3CVTA 4EVVA 2NOFA 1KG5A 4B22A 1HU0A 4YPHA 1KG3A 4UOBA 1FN7A 1MUYA 4AIAA 1KG2A 3OGDA 1YQRA 1M3HA 5KN9A 3CWSA 5CHZA 1XQOA 3OH6A 1N39A 1DIZA 1ORNA 1P7MA 3IH7A 4EJYA 3G0QA 3D4VA 4YPRA 2NOZA 2OFKA 3FHGA 4EA5A
chains in the Genus database with same CATH superfamily
1PU7A 2YG9A 3R2XC 1RRQA 1WEIA 4IKFA 1U84A 3I0XA 4BE2A 1VRLA 3CVSA 3OH9A 4EW0A 4AI4A 1MUNA 1LWVA 3OYIA 4BE1A 4OFHA 4PIIA 4EA4A 4DK9A 1LWWA 1LWYA 1N3AA 1KEAA 3OYLA 1MUDA 1WEFA 2OFIA 4ZTFA 1PU8A 1RRSA 3KNTA 2NOHA 3NNQA 1XG7A 4YOQA 4BACA 5DPKA 3OYNA 5KN8A 4E7KA 3L2WA 3OYBA 1LMZA 4E9FA 1N3CA 1KG4A 1ORPA 1PU6A 2JPSA 4UNFA 3S3OA 1KG6A 1XQPA 3FHFA 3F10A 3F0ZA 2NOLA 5FROA 1YQKA 2H56A 3OS1A 3S3MA 4BDZA 3OS0A 4E9HA 3I0WA 2YG8A 1YQMA 3L2UA 3OY9A 3OYAA 3OS2A 1NKUA 3N5NX 1KG7A 1EBMA 4B24A 4B23A 3OYDA 3CWUA 4OFEA 2XHIA 1KQJA 4EJZA 3OYFA 4HSBA 1KO9A 3N0UA 4E9EA 4EW4A 4B21A 4E9GA 5AN4A 2JG6A 4E7JA 3CW7A 3LCNA 3L2QA 2NOIA 3S6IA 3FSPA 2NOBA 3CWTA 5FRMA 1YQLA 2ABKA 1M3QA 4AI5A 4BE0A 1NGNA 1P59A 4OFAA 2JHJA 2I5WA 1MPGA 4E7LA 1WEGA 3CWAA 3S3NA 1PVSA 4NZGA 4E7HA 4E7IA 3KTUA 2NOEA 3IHOA 2JHNA 3CVTA 2V75A 3OYKA 4EVVA 2NOFA 3OYMA 1KG5A 4B22A 1HU0A 5FRNA 4YPHA 2W03A 1KG3A 4UOBA 1FN7A 1MUYA 4AIAA 1KG2A 3OGDA 1YQRA 1M3HA 5KN9A 2W04A 3CWSA 3OYHA 3L2VA 5CHZA 1XQOA 3OH6A 1N39A 4BDYA 3OYJA 1DIZA 3VW4A 1ORNA 1P7MA 3IH7A 3OYEA 3OYCA 3OYGA 4EJYA 3G0QA 3D4VA 4YPRA 4ZTJA 2NOZA 2OFKA 3FHGA 3L2RA 4EA5A
chains in the Genus database with same CATH topology
1PU7A 2YG9A 1RRQA 1WEIA 1VRLA 3I0XA 3CVSA 3OH9A 4EW0A 4AI4A 1MUNA 1LWVA 4OFHA 4PIIA 4EA4A 4DK9A 1LWWA 1LWYA 1N3AA 1KEAA 1MUDA 1WEFA 2OFIA 1PU8A 1RRSA 3KNTA 2NOHA 1XG7A 4YOQA 5DPKA 5KN8A 1LMZA 4E9FA 1N3CA 1KG4A 1ORPA 1PU6A 4UNFA 1KG6A 1XQPA 3FHFA 3F10A 3F0ZA 2NOLA 1YQKA 2H56A 4E9HA 3I0WA 2YG8A 1YQMA 1NKUA 3N5NX 1KG7A 1EBMA 4B24A 4B23A 3CWUA 4OFEA 2XHIA 1KQJA 4EJZA 4HSBA 1KO9A 3N0UA 4E9EA 4EW4A 4B21A 4E9GA 5AN4A 2JG6A 3CW7A 2NOIA 3S6IA 3FSPA 2NOBA 3CWTA 1YQLA 2ABKA 1M3QA 4AI5A 1P59A 1NGNA 4OFAA 2JHJA 2I5WA 1MPGA 1WEGA 3CWAA 1PVSA 3KTUA 2NOEA 3IHOA 2JHNA 3CVTA 4EVVA 2NOFA 1KG5A 4B22A 1HU0A 4YPHA 1KG3A 4UOBA 1FN7A 1MUYA 4AIAA 1KG2A 3OGDA 1YQRA 1M3HA 5KN9A 3CWSA 5CHZA 1XQOA 3OH6A 1N39A 1DIZA 1ORNA 1P7MA 3IH7A 4EJYA 3G0QA 3D4VA 4YPRA 2NOZA 2OFKA 3FHGA 4EA5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PU7 A;  2YG9 A;  1RRQ A;  1WEI A;  1VRL A;  3I0X A;  3CVS A;  3OH9 A;  4EW0 A;  4AI4 A;  1MUN A;  1LWV A;  4OFH A;  4PII A;  4EA4 A;  4DK9 A;  1LWW A;  1LWY A;  1N3A A;  1KEA A;  1MUD A;  1WEF A;  2OFI A;  1PU8 A;  1RRS A;  3KNT A;  2NOH A;  1XG7 A;  4YOQ A;  5DPK A;  5KN8 A;  1LMZ A;  4E9F A;  1N3C A;  1KG4 A;  1ORP A;  1PU6 A;  4UNF A;  1KG6 A;  1XQP A;  3FHF A;  3F10 A;  3F0Z A;  2NOL A;  1YQK A;  2H56 A;  4E9H A;  3I0W A;  2YG8 A;  1YQM A;  1NKU A;  3N5N X;  1KG7 A;  1EBM A;  4B24 A;  4B23 A;  3CWU A;  4OFE A;  2XHI A;  1KQJ A;  4EJZ A;  4HSB A;  1KO9 A;  3N0U A;  4E9E A;  4EW4 A;  4B21 A;  4E9G A;  5AN4 A;  2JG6 A;  3CW7 A;  2NOI A;  3S6I A;  3FSP A;  2NOB A;  3CWT A;  1YQL A;  2ABK A;  1M3Q A;  4AI5 A;  1P59 A;  1NGN A;  4OFA A;  2JHJ A;  2I5W A;  1MPG A;  1WEG A;  3CWA A;  1PVS A;  3KTU A;  2NOE A;  3IHO A;  2JHN A;  3CVT A;  4EVV A;  2NOF A;  1KG5 A;  4B22 A;  1HU0 A;  4YPH A;  1KG3 A;  4UOB A;  1FN7 A;  1MUY A;  4AIA A;  1KG2 A;  3OGD A;  1YQR A;  1M3H A;  5KN9 A;  3CWS A;  5CHZ A;  1XQO A;  3OH6 A;  1N39 A;  1DIZ A;  1ORN A;  1P7M A;  3IH7 A;  4EJY A;  3G0Q A;  3D4V A;  4YPR A;  2NOZ A;  2OFK A;  3FHG A;  4EA5 A; 
#chains in the Genus database with same CATH topology
 1PU7 A;  2YG9 A;  3R2X C;  1RRQ A;  1WEI A;  4IKF A;  1U84 A;  3I0X A;  4BE2 A;  1VRL A;  3CVS A;  3OH9 A;  4EW0 A;  4AI4 A;  1MUN A;  1LWV A;  3OYI A;  4BE1 A;  4OFH A;  4PII A;  4EA4 A;  4DK9 A;  1LWW A;  1LWY A;  1N3A A;  1KEA A;  3OYL A;  1MUD A;  1WEF A;  2OFI A;  4ZTF A;  1PU8 A;  1RRS A;  3KNT A;  2NOH A;  3NNQ A;  1XG7 A;  4YOQ A;  4BAC A;  5DPK A;  3OYN A;  5KN8 A;  4E7K A;  3L2W A;  3OYB A;  1LMZ A;  4E9F A;  1N3C A;  1KG4 A;  1ORP A;  1PU6 A;  2JPS A;  4UNF A;  3S3O A;  1KG6 A;  1XQP A;  3FHF A;  3F10 A;  3F0Z A;  2NOL A;  5FRO A;  1YQK A;  2H56 A;  3OS1 A;  3S3M A;  4BDZ A;  3OS0 A;  4E9H A;  3I0W A;  2YG8 A;  1YQM A;  3L2U A;  3OY9 A;  3OYA A;  3OS2 A;  1NKU A;  3N5N X;  1KG7 A;  1EBM A;  4B24 A;  4B23 A;  3OYD A;  3CWU A;  4OFE A;  2XHI A;  1KQJ A;  4EJZ A;  3OYF A;  4HSB A;  1KO9 A;  3N0U A;  4E9E A;  4EW4 A;  4B21 A;  4E9G A;  5AN4 A;  2JG6 A;  4E7J A;  3CW7 A;  3LCN A;  3L2Q A;  2NOI A;  3S6I A;  3FSP A;  2NOB A;  3CWT A;  5FRM A;  1YQL A;  2ABK A;  1M3Q A;  4AI5 A;  4BE0 A;  1NGN A;  1P59 A;  4OFA A;  2JHJ A;  2I5W A;  1MPG A;  4E7L A;  1WEG A;  3CWA A;  3S3N A;  1PVS A;  4NZG A;  4E7H A;  4E7I A;  3KTU A;  2NOE A;  3IHO A;  2JHN A;  3CVT A;  2V75 A;  3OYK A;  4EVV A;  2NOF A;  3OYM A;  1KG5 A;  4B22 A;  1HU0 A;  5FRN A;  4YPH A;  2W03 A;  1KG3 A;  4UOB A;  1FN7 A;  1MUY A;  4AIA A;  1KG2 A;  3OGD A;  1YQR A;  1M3H A;  5KN9 A;  2W04 A;  3CWS A;  3OYH A;  3L2V A;  5CHZ A;  1XQO A;  3OH6 A;  1N39 A;  4BDY A;  3OYJ A;  1DIZ A;  3VW4 A;  1ORN A;  1P7M A;  3IH7 A;  3OYE A;  3OYC A;  3OYG A;  4EJY A;  3G0Q A;  3D4V A;  4YPR A;  4ZTJ A;  2NOZ A;  2OFK A;  3FHG A;  3L2R A;  4EA5 A; 
#chains in the Genus database with same CATH homology
 1PU7 A;  2YG9 A;  1RRQ A;  1WEI A;  1VRL A;  3I0X A;  3CVS A;  3OH9 A;  4EW0 A;  4AI4 A;  1MUN A;  1LWV A;  4OFH A;  4PII A;  4EA4 A;  4DK9 A;  1LWW A;  1LWY A;  1N3A A;  1KEA A;  1MUD A;  1WEF A;  2OFI A;  1PU8 A;  1RRS A;  3KNT A;  2NOH A;  1XG7 A;  4YOQ A;  5DPK A;  5KN8 A;  1LMZ A;  4E9F A;  1N3C A;  1KG4 A;  1ORP A;  1PU6 A;  4UNF A;  1KG6 A;  1XQP A;  3FHF A;  3F10 A;  3F0Z A;  2NOL A;  1YQK A;  2H56 A;  4E9H A;  3I0W A;  2YG8 A;  1YQM A;  1NKU A;  3N5N X;  1KG7 A;  1EBM A;  4B24 A;  4B23 A;  3CWU A;  4OFE A;  2XHI A;  1KQJ A;  4EJZ A;  4HSB A;  1KO9 A;  3N0U A;  4E9E A;  4EW4 A;  4B21 A;  4E9G A;  5AN4 A;  2JG6 A;  3CW7 A;  2NOI A;  3S6I A;  3FSP A;  2NOB A;  3CWT A;  1YQL A;  2ABK A;  1M3Q A;  4AI5 A;  1P59 A;  1NGN A;  4OFA A;  2JHJ A;  2I5W A;  1MPG A;  1WEG A;  3CWA A;  1PVS A;  3KTU A;  2NOE A;  3IHO A;  2JHN A;  3CVT A;  4EVV A;  2NOF A;  1KG5 A;  4B22 A;  1HU0 A;  4YPH A;  1KG3 A;  4UOB A;  1FN7 A;  1MUY A;  4AIA A;  1KG2 A;  3OGD A;  1YQR A;  1M3H A;  5KN9 A;  3CWS A;  5CHZ A;  1XQO A;  3OH6 A;  1N39 A;  1DIZ A;  1ORN A;  1P7M A;  3IH7 A;  4EJY A;  3G0Q A;  3D4V A;  4YPR A;  2NOZ A;  2OFK A;  3FHG A;  4EA5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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