4AIPA

The frpb iron transporter from neisseria meningitidis (f3-3 variant)
Total Genus 195
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
195
sequence length
682
structure length
661
Chain Sequence
DRQGSKIRTNIVTLQQKDESTATDMRELLKEEPSIDFGGGNGTSQFLTLRGMGQNSVDIKVDNAYSDSQILYHQGRFIVDPALVKVVSVQKGAGSASAGIGATNGAIIAKTVDAQDLLKGLDKNWGVRLNSGFASNNGVSYGASVFGKEGNFDGLFSYNRNDEKDYEAGKGFRNVNGGKTVPYSALDKRSYLAKIGTTFGDDDHRIVLSHMKDQHRGIRTVREEFTVGDKSSRINIDRQAPAYRETTQSNTNLAYTGKNLGFVEKLDANAYVLEKERYSADDSGTGYAGNVKGPNHTRITTRGANFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNSKFSIPTPMEQQMKDRADEDTVHAYKLSNPTKTDTGVYIEAIHDIGDFTLTGGLRYDRFKVKTHDGKTVSSSNLNPSFGVIWQPHEHWSFSASHNYASRSPRLYDALQTHGKRGIISIADGTKAERARNTEIGFNYNDGTFAANGSYFWQTIKDALANPQAVREAVNAGYIKNHGYELGASYRTGGLTAKVGVSHSKPRFYDTHKDKLLSANPEFGAQVGRTWTASLAYRFQNPNLEIGWRGRYVQKATGSILAAGQKNLENVVRKGFGVNDVFANWKPLGKDTLNVNLSVNNVFNKFYYPHSQRWTNTLPGVGRDVRLGVNYKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
molecule keywords FE-REGULATED PROTEIN B
publication title Use of a Molecular Decoy to Segregate Transport from Antigenicity in the Frpb Iron Transporter from Neisseria Meningitidis
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 195
structure length 661
sequence length 682
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2012-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 4aipA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 4aipA01
1FI1A 2HDFA 3CSNA 2GSKA 2YSUA 4B7OA 2W6TA 4CU4A 1PO3A 3M8DA 3RGNA 3FHHA 4RDTA 1QKCA 1QFGA 3CSLA 3V8XA 1FEPA 4AIQA 2W76A 2GUFA 3RGMA 2W6UA 1QJQA 3EFMA 2O5PA 1XKHA 2HDIA 2GRXA 2FCPA 1XKWA 1NQEA 1BY3A 1KMPA 1PNZA 2W78A 2W75A 1BY5A 2W77A 5FOKA 1KMOA 1FCPA 3M8BA 3QLBA 1PO0A 2IAHA 4EPAA 1NQFA 3DDRA 4RDRA 4AIPA 3V89A 1NQGA 1QFFA 1UJWA 2W16A 1NQHA
chains in the Genus database with same CATH superfamily
1FI1A 2HDFA 3CSNA 2GSKA 2YSUA 4B7OA 1MPNA 2W6TA 4CU4A 1MPRA 1PO3A 3M8DA 1OH2Q 1MPMA 1A0SP 3RGNA 3FHHA 4RDTA 1QKCA 1OH2P 1MALA 1QFGA 3CSLA 3V8XA 1FEPA 4AIQA 2W76A 2GUFA 3RGMA 2W6UA 1JBIA 1MPOA 1QJQA 3EFMA 2O5PA 1XKHA 2HDIA 2GRXA 1A0TP 2FCPA 1XKWA 1NQEA 1BY3A 1KMPA 1PNZA 2W78A 2W75A 1BY5A 2W77A 5FOKA 1MPQA 1FCPA 3M8BA 3QLBA 1KMOA 2IAHA 4EPAA 1PO0A 1NQFA 3DDRA 4RDRA 4AIPA 1AF6A 2MPRA 3V89A 1NQGA 1QFFA 1UJWA 2W16A 1NQHA
chains in the Genus database with same CATH topology
1FI1A 2HDFA 3CSNA 2GSKA 2YSUA 4B7OA 2W6TA 4CU4A 1PO3A 3M8DA 3RGNA 3FHHA 4RDTA 1QKCA 1QFGA 3CSLA 3V8XA 1FEPA 4AIQA 2W76A 2GUFA 3RGMA 2W6UA 1QJQA 3EFMA 2O5PA 1XKHA 2HDIA 2GRXA 2FCPA 1XKWA 1NQEA 1BY3A 1KMPA 1PNZA 2W78A 2W75A 1BY5A 2W77A 5FOKA 1KMOA 1FCPA 3M8BA 3QLBA 1PO0A 2IAHA 4EPAA 1NQFA 3DDRA 4RDRA 4AIPA 3V89A 1NQGA 1QFFA 1UJWA 2W16A 1NQHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FI1 A;  2HDF A;  3CSN A;  2GSK A;  2YSU A;  4B7O A;  2W6T A;  4CU4 A;  1PO3 A;  3M8D A;  3RGN A;  3FHH A;  4RDT A;  1QKC A;  1QFG A;  3CSL A;  3V8X A;  1FEP A;  4AIQ A;  2W76 A;  2GUF A;  3RGM A;  2W6U A;  1QJQ A;  3EFM A;  2O5P A;  1XKH A;  2HDI A;  2GRX A;  2FCP A;  1XKW A;  1NQE A;  1BY3 A;  1KMP A;  1PNZ A;  2W78 A;  2W75 A;  1BY5 A;  2W77 A;  5FOK A;  1KMO A;  1FCP A;  3M8B A;  3QLB A;  1PO0 A;  2IAH A;  4EPA A;  1NQF A;  3DDR A;  4RDR A;  4AIP A;  3V89 A;  1NQG A;  1QFF A;  1UJW A;  2W16 A;  1NQH A; 
#chains in the Genus database with same CATH topology
 1FI1 A;  2HDF A;  3CSN A;  2GSK A;  2YSU A;  4B7O A;  1MPN A;  2W6T A;  4CU4 A;  1MPR A;  1PO3 A;  3M8D A;  1OH2 Q;  1MPM A;  1A0S P;  3RGN A;  3FHH A;  4RDT A;  1QKC A;  1OH2 P;  1MAL A;  1QFG A;  3CSL A;  3V8X A;  1FEP A;  4AIQ A;  2W76 A;  2GUF A;  3RGM A;  2W6U A;  1JBI A;  1MPO A;  1QJQ A;  3EFM A;  2O5P A;  1XKH A;  2HDI A;  2GRX A;  1A0T P;  2FCP A;  1XKW A;  1NQE A;  1BY3 A;  1KMP A;  1PNZ A;  2W78 A;  2W75 A;  1BY5 A;  2W77 A;  5FOK A;  1MPQ A;  1FCP A;  3M8B A;  3QLB A;  1KMO A;  2IAH A;  4EPA A;  1PO0 A;  1NQF A;  3DDR A;  4RDR A;  4AIP A;  1AF6 A;  2MPR A;  3V89 A;  1NQG A;  1QFF A;  1UJW A;  2W16 A;  1NQH A; 
#chains in the Genus database with same CATH homology
 1FI1 A;  2HDF A;  3CSN A;  2GSK A;  2YSU A;  4B7O A;  2W6T A;  4CU4 A;  1PO3 A;  3M8D A;  3RGN A;  3FHH A;  4RDT A;  1QKC A;  1QFG A;  3CSL A;  3V8X A;  1FEP A;  4AIQ A;  2W76 A;  2GUF A;  3RGM A;  2W6U A;  1QJQ A;  3EFM A;  2O5P A;  1XKH A;  2HDI A;  2GRX A;  2FCP A;  1XKW A;  1NQE A;  1BY3 A;  1KMP A;  1PNZ A;  2W78 A;  2W75 A;  1BY5 A;  2W77 A;  5FOK A;  1KMO A;  1FCP A;  3M8B A;  3QLB A;  1PO0 A;  2IAH A;  4EPA A;  1NQF A;  3DDR A;  4RDR A;  4AIP A;  3V89 A;  1NQG A;  1QFF A;  1UJW A;  2W16 A;  1NQH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...