4AIQA

The frpb iron transporter from neisseria meningitidis (f5-1 variant)
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
679
structure length
660
Chain Sequence
IRTNIVTLQQKDESTATDMRELLKEEPSIDFGGGNGTSQFLTLRGMGQNSVDIKVDNAYSDSQILYHQGRFIVDPALVKVVSVQKGAGSASAGIGATNGAIIAKTVDAQDLLKGLDKNWGVRLNSGFASNEGVSYGASVFGKEGNFDGLFSYNRNDEKEYEAGKGFRNFNGGKTVPYSALDKRSYLAKIGTTFGDGDHRIVLSHMEDQHRGIRTVREEFTVGDASSRTNITRQAPPYRETTQSNTNLAYTGKDLGFVEKLDANAYVLEKKRYSADDKDNGYAGNVVGPNHTRITTRGMNFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNGEFEISGEKAKDKKDMDLVHSYKLSNPTKTDTGAYIEAIHELDGFTLTGGLRYDRFKVKTHDGKTVSSSNLNPSFGVIWQPHEHWSFSSSHNYASRSPRLYDALQTHGKRGIISIADGTKAERARNTEIGFNYNDGTFAANGSYFWQTIKDALANPQNRHVSAAVREAVNAGYIKNHGYELGASYRTGGLTAKVGVSHSKPRFYDTHPKKLLSANPEFGAQVGRAWTASLAYRFQNPNLEIGWRGRYVQKAVGSILVAGQKDRKLENVVRKGFGVNDVFANWKPLGKDTLNVNLSVNNVFNTFYYPHSQRWTNTLPGVGRDVRLGVNYKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
molecule keywords FERRIC ENTEROBACTIN RECEPTOR
publication title Use of a Molecular Decoy to Segregate Transport from Antigenicity in the Frpb Iron Transporter from Neisseria Meningitidis
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 198
structure length 660
sequence length 679
ec nomenclature
pdb deposition date 2012-02-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 4aiqA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 4aiqA01
4AIQA 4B7OA 2W76A 1NQEA 1FEPA 1QFFA 4EPAA 2W6UA 3CSNA 2HDIA 1KMPA 2W16A 3M8BA 1KMOA 2W6TA 3V8XA 4CU4A 1QJQA 3RGNA 1BY5A 1PNZA 3FHHA 5FOKA 3RGMA 2W78A 2FCPA 3V89A 3DDRA 1UJWA 2GRXA 3EFMA 2YSUA 4RDTA 1NQHA 1NQGA 3QLBA 2W77A 1BY3A 1XKWA 1QFGA 1XKHA 1QKCA 2W75A 2GSKA 4RDRA 1FI1A 2O5PA 1PO0A 3M8DA 2GUFA 1FCPA 1PO3A 1NQFA 4AIPA 2IAHA 2HDFA 3CSLA
chains in the Genus database with same CATH superfamily
4AIQA 4B7OA 2W76A 1JBIA 1NQEA 1FEPA 1QFFA 1MPMA 4EPAA 2W6UA 3CSNA 1MPQA 2HDIA 1KMPA 2W16A 3M8BA 1AF6A 2MPRA 1KMOA 2W6TA 3V8XA 4CU4A 1QJQA 3RGNA 1MALA 1BY5A 1PNZA 1OH2P 3FHHA 5FOKA 3RGMA 2W78A 2FCPA 1MPNA 3DDRA 1MPRA 3V89A 1UJWA 2GRXA 3EFMA 2YSUA 4RDTA 1A0SP 1NQHA 1NQGA 1OH2Q 3QLBA 4RDRA 2W77A 1BY3A 1XKWA 1A0TP 1QFGA 1MPOA 1QKCA 2GSKA 1XKHA 1FI1A 2O5PA 2W75A 1PO0A 3M8DA 2GUFA 1FCPA 1PO3A 1NQFA 4AIPA 2IAHA 2HDFA 3CSLA
chains in the Genus database with same CATH topology
4AIQA 4B7OA 2W76A 1NQEA 1FEPA 1QFFA 4EPAA 2W6UA 3CSNA 2HDIA 1KMPA 2W16A 3M8BA 1KMOA 2W6TA 3V8XA 4CU4A 1QJQA 3RGNA 1BY5A 1PNZA 3FHHA 5FOKA 3RGMA 2W78A 2FCPA 3V89A 3DDRA 1UJWA 2GRXA 3EFMA 2YSUA 4RDTA 1NQHA 1NQGA 3QLBA 2W77A 1BY3A 1XKWA 1QFGA 1XKHA 1QKCA 2W75A 2GSKA 4RDRA 1FI1A 2O5PA 1PO0A 3M8DA 2GUFA 1FCPA 1PO3A 1NQFA 4AIPA 2IAHA 2HDFA 3CSLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AIQ A;  4B7O A;  2W76 A;  1NQE A;  1FEP A;  1QFF A;  4EPA A;  2W6U A;  3CSN A;  2HDI A;  1KMP A;  2W16 A;  3M8B A;  1KMO A;  2W6T A;  3V8X A;  4CU4 A;  1QJQ A;  3RGN A;  1BY5 A;  1PNZ A;  3FHH A;  5FOK A;  3RGM A;  2W78 A;  2FCP A;  3V89 A;  3DDR A;  1UJW A;  2GRX A;  3EFM A;  2YSU A;  4RDT A;  1NQH A;  1NQG A;  3QLB A;  2W77 A;  1BY3 A;  1XKW A;  1QFG A;  1XKH A;  1QKC A;  2W75 A;  2GSK A;  4RDR A;  1FI1 A;  2O5P A;  1PO0 A;  3M8D A;  2GUF A;  1FCP A;  1PO3 A;  1NQF A;  4AIP A;  2IAH A;  2HDF A;  3CSL A; 
#chains in the Genus database with same CATH topology
 4AIQ A;  4B7O A;  2W76 A;  1JBI A;  1NQE A;  1FEP A;  1QFF A;  1MPM A;  4EPA A;  2W6U A;  3CSN A;  1MPQ A;  2HDI A;  1KMP A;  2W16 A;  3M8B A;  1AF6 A;  2MPR A;  1KMO A;  2W6T A;  3V8X A;  4CU4 A;  1QJQ A;  3RGN A;  1MAL A;  1BY5 A;  1PNZ A;  1OH2 P;  3FHH A;  5FOK A;  3RGM A;  2W78 A;  2FCP A;  1MPN A;  3DDR A;  1MPR A;  3V89 A;  1UJW A;  2GRX A;  3EFM A;  2YSU A;  4RDT A;  1A0S P;  1NQH A;  1NQG A;  1OH2 Q;  3QLB A;  4RDR A;  2W77 A;  1BY3 A;  1XKW A;  1A0T P;  1QFG A;  1MPO A;  1QKC A;  2GSK A;  1XKH A;  1FI1 A;  2O5P A;  2W75 A;  1PO0 A;  3M8D A;  2GUF A;  1FCP A;  1PO3 A;  1NQF A;  4AIP A;  2IAH A;  2HDF A;  3CSL A; 
#chains in the Genus database with same CATH homology
 4AIQ A;  4B7O A;  2W76 A;  1NQE A;  1FEP A;  1QFF A;  4EPA A;  2W6U A;  3CSN A;  2HDI A;  1KMP A;  2W16 A;  3M8B A;  1KMO A;  2W6T A;  3V8X A;  4CU4 A;  1QJQ A;  3RGN A;  1BY5 A;  1PNZ A;  3FHH A;  5FOK A;  3RGM A;  2W78 A;  2FCP A;  3V89 A;  3DDR A;  1UJW A;  2GRX A;  3EFM A;  2YSU A;  4RDT A;  1NQH A;  1NQG A;  3QLB A;  2W77 A;  1BY3 A;  1XKW A;  1QFG A;  1XKH A;  1QKC A;  2W75 A;  2GSK A;  4RDR A;  1FI1 A;  2O5P A;  1PO0 A;  3M8D A;  2GUF A;  1FCP A;  1PO3 A;  1NQF A;  4AIP A;  2IAH A;  2HDF A;  3CSL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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