4AIVA

Crystal structure of putative nadh-dependent nitrite reductase small subunit from mycobacterium tuberculosis
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
113
structure length
113
Chain Sequence
DIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PROBABLE NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT NIRD
publication title Crystal Structure of Nird, the Small Subunit of the Nitrite Reductase Nirbd from Mycobacterium Tuberculosis, at 2.0 Angstrom Resolution
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 21
structure length 113
sequence length 113
ec nomenclature ec 1.6.6.4: Transferred entry: 1.7.1.4.
pdb deposition date 2012-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13806 Rieske_2 Rieske-like [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4aivA00
1VM9A 2NVGA 3CX5E 3VMID 3GTSA 4QDDA 1RIEA 2IBZE 4H44D 3D89A 5KKZC 2E76D 4EMJB 2E4QA 2BCCE 4QUPA 3GTEA 3GZYA 3VCAA 1FQTA 1NU1E 1O7GA 1VCKA 2NUKA 2YFIA 5AEWA 1NDOA 3CXHE 4HM5A 4NB9D 2HMKA 1G8KB 2A06E 2XSHA 4QURA 1P84E 4HM7A 1RFSA 4NBGD 2E75D 4NBBD 5KLVE 4NBED 3VCPA 1SJGA 5AEUA 1SQBE 1ULIA 2B24A 1L0LE 3L72E 2HMNA 2JZAA 3GL0A 1BE3E 1UUWA 2B1XA 3H1HE 3GL2A 2YFJA 2E74D 3BCCE 2YFLA 3GCEA 3FOUA 5KLIC 4HKVA 2XR8A 2CKFA 4HJLA 2BMOA 4HM4A 2DE7D 3CWBE 3GB4A 2HMJA 4NBHD 4H13D 2QJKC 2I7FA 1PP9E 3H1JE 2E4PA 1VF5D 2HMMA 4QDFB 3EQQA 1NTZE 1UUVA 3L71E 2BMRA 1JM1A 2XRXA 5CXMA 3H1LE 4QDCA 2BMQA 4HM8A 2NVEA 4OGQD 4HM0A 1ZRTE 4PV1D 4HM6A 4U3FE 1WQLA 2QPZA 3C0DA 2YVJB 4P1CH 1O7WA 3L73E 2DE6D 3VMGD 3GZXA 4HM3A 2YIUC 4QCKA 5HL4A 3H1KE 2HMLA 1PPJE 1Q90C 1O7MA 1ULJA 2NUMA 4QDFA 1O7NA 2Q3WA 3H1IE 4NBCD 3AZCA 1SQVE 4NBDD 3GKEA 2QJYC 3TGUE 1L0NE 4NBAD 1SQXE 4HM1A 4H0LD 2HMOA 3GOBA 4NBFD 4NB8D 2D2CD 1NTKE 1EZVE 2GBWA 4AAYB 4AIVA 1O7HA 2FYNC 1O7PA 2XSOA 4HM2A 1SQPE 5BOKA 2NWFA 1KB9E 4PD4E 1KYOE 2JO6A 1SQQE 2DE5D 2ZYLA 3DQYA 4P1BH 1NYKA 1BCCE 3EN1A 2FYUE 2ZT9D 2QJPC 2NVFA 4QUQA 1NTME 3N0QA 3VMHD 3L74E 1EG9A 3L70E 2GBXA 3L75E 1G8JB
chains in the Genus database with same CATH superfamily
1VM9A 2NVGA 3CX5E 3VMID 3GTSA 4QDDA 1RIEA 2IBZE 4H44D 3D89A 5KKZC 2E76D 4EMJB 2E4QA 2BCCE 4QUPA 3GTEA 3GZYA 3VCAA 1FQTA 1NU1E 1O7GA 1VCKA 2NUKA 2YFIA 5AEWA 1NDOA 3CXHE 4HM5A 4NB9D 2HMKA 1G8KB 2A06E 2XSHA 4QURA 1P84E 4HM7A 1RFSA 4NBGD 2E75D 4NBBD 5KLVE 4NBED 3VCPA 1SJGA 5AEUA 1SQBE 1ULIA 2B24A 1L0LE 3L72E 2HMNA 2JZAA 3GL0A 1BE3E 1UUWA 2B1XA 3H1HE 3GL2A 2YFJA 2E74D 3BCCE 2YFLA 3GCEA 3FOUA 5KLIC 4HKVA 2XR8A 2CKFA 4HJLA 2BMOA 4HM4A 2DE7D 3CWBE 3GB4A 2HMJA 4NBHD 4H13D 2QJKC 2I7FA 1PP9E 3H1JE 2E4PA 1VF5D 2HMMA 4QDFB 3EQQA 1NTZE 1UUVA 3L71E 2BMRA 1JM1A 2XRXA 5CXMA 3H1LE 4QDCA 2BMQA 4HM8A 2NVEA 4OGQD 4HM0A 1ZRTE 4PV1D 4HM6A 4U3FE 1WQLA 2QPZA 3C0DA 2YVJB 4P1CH 1O7WA 3L73E 2DE6D 3VMGD 3GZXA 4HM3A 2YIUC 4QCKA 5HL4A 3H1KE 2HMLA 1PPJE 1Q90C 1O7MA 1ULJA 2NUMA 4QDFA 1O7NA 2Q3WA 3H1IE 4NBCD 3AZCA 1SQVE 4NBDD 3GKEA 2QJYC 3TGUE 1L0NE 4NBAD 1SQXE 4HM1A 4H0LD 2HMOA 3GOBA 4NBFD 4NB8D 2D2CD 1NTKE 1EZVE 2GBWA 4AAYB 4AIVA 1O7HA 2FYNC 1O7PA 2XSOA 4HM2A 1SQPE 5BOKA 2NWFA 1KB9E 4PD4E 1KYOE 2JO6A 1SQQE 2DE5D 2ZYLA 3DQYA 4P1BH 1NYKA 1BCCE 3EN1A 2FYUE 2ZT9D 2QJPC 2NVFA 4QUQA 1NTME 3N0QA 3VMHD 3L74E 1EG9A 3L70E 2GBXA 3L75E 1G8JB
chains in the Genus database with same CATH topology
1VM9A 2NVGA 3CX5E 3VMID 3GTSA 4QDDA 1RIEA 2IBZE 4H44D 3D89A 5KKZC 2E76D 4EMJB 2E4QA 2BCCE 4QUPA 3GTEA 3GZYA 3VCAA 1FQTA 1NU1E 1O7GA 1VCKA 2NUKA 2YFIA 5AEWA 1NDOA 3CXHE 4HM5A 4NB9D 2HMKA 1G8KB 2A06E 2XSHA 4QURA 1P84E 4HM7A 1RFSA 4NBGD 2E75D 4NBBD 5KLVE 4NBED 3VCPA 1SJGA 5AEUA 1SQBE 1ULIA 2B24A 1L0LE 3L72E 2HMNA 2JZAA 3GL0A 1BE3E 1UUWA 2B1XA 3H1HE 3GL2A 2YFJA 2E74D 3BCCE 2YFLA 3GCEA 3FOUA 5KLIC 4HKVA 2XR8A 2CKFA 4HJLA 2BMOA 4HM4A 2DE7D 3CWBE 3GB4A 2HMJA 4NBHD 4H13D 2QJKC 2I7FA 1PP9E 3H1JE 2E4PA 1VF5D 2HMMA 4QDFB 3EQQA 1NTZE 1UUVA 3L71E 2BMRA 1JM1A 2XRXA 5CXMA 3H1LE 4QDCA 2BMQA 4HM8A 2NVEA 4OGQD 4HM0A 1ZRTE 4PV1D 4HM6A 4U3FE 1WQLA 2QPZA 3C0DA 2YVJB 4P1CH 1O7WA 3L73E 2DE6D 3VMGD 3GZXA 4HM3A 2YIUC 4QCKA 5HL4A 3H1KE 2HMLA 1PPJE 1Q90C 1O7MA 1ULJA 2NUMA 4QDFA 1O7NA 2Q3WA 3H1IE 4NBCD 3AZCA 1SQVE 4NBDD 3GKEA 2QJYC 3TGUE 1L0NE 4NBAD 1SQXE 4HM1A 4H0LD 2HMOA 3GOBA 4NBFD 4NB8D 2D2CD 1NTKE 1EZVE 2GBWA 4AAYB 4AIVA 1O7HA 2FYNC 1O7PA 2XSOA 4HM2A 1SQPE 5BOKA 2NWFA 1KB9E 4PD4E 1KYOE 2JO6A 1SQQE 2DE5D 2ZYLA 3DQYA 4P1BH 1NYKA 1BCCE 3EN1A 2FYUE 2ZT9D 2QJPC 2NVFA 4QUQA 1NTME 3N0QA 3VMHD 3L74E 1EG9A 3L70E 2GBXA 3L75E 1G8JB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VM9 A;  2NVG A;  3CX5 E;  3VMI D;  3GTS A;  4QDD A;  1RIE A;  2IBZ E;  4H44 D;  3D89 A;  5KKZ C;  2E76 D;  4EMJ B;  2E4Q A;  2BCC E;  4QUP A;  3GTE A;  3GZY A;  3VCA A;  1FQT A;  1NU1 E;  1O7G A;  1VCK A;  2NUK A;  2YFI A;  5AEW A;  1NDO A;  3CXH E;  4HM5 A;  4NB9 D;  2HMK A;  1G8K B;  2A06 E;  2XSH A;  4QUR A;  1P84 E;  4HM7 A;  1RFS A;  4NBG D;  2E75 D;  4NBB D;  5KLV E;  4NBE D;  3VCP A;  1SJG A;  5AEU A;  1SQB E;  1ULI A;  2B24 A;  1L0L E;  3L72 E;  2HMN A;  2JZA A;  3GL0 A;  1BE3 E;  1UUW A;  2B1X A;  3H1H E;  3GL2 A;  2YFJ A;  2E74 D;  3BCC E;  2YFL A;  3GCE A;  3FOU A;  5KLI C;  4HKV A;  2XR8 A;  2CKF A;  4HJL A;  2BMO A;  4HM4 A;  2DE7 D;  3CWB E;  3GB4 A;  2HMJ A;  4NBH D;  4H13 D;  2QJK C;  2I7F A;  1PP9 E;  3H1J E;  2E4P A;  1VF5 D;  2HMM A;  4QDF B;  3EQQ A;  1NTZ E;  1UUV A;  3L71 E;  2BMR A;  1JM1 A;  2XRX A;  5CXM A;  3H1L E;  4QDC A;  2BMQ A;  4HM8 A;  2NVE A;  4OGQ D;  4HM0 A;  1ZRT E;  4PV1 D;  4HM6 A;  4U3F E;  1WQL A;  2QPZ A;  3C0D A;  2YVJ B;  4P1C H;  1O7W A;  3L73 E;  2DE6 D;  3VMG D;  3GZX A;  4HM3 A;  2YIU C;  4QCK A;  5HL4 A;  3H1K E;  2HML A;  1PPJ E;  1Q90 C;  1O7M A;  1ULJ A;  2NUM A;  4QDF A;  1O7N A;  2Q3W A;  3H1I E;  4NBC D;  3AZC A;  1SQV E;  4NBD D;  3GKE A;  2QJY C;  3TGU E;  1L0N E;  4NBA D;  1SQX E;  4HM1 A;  4H0L D;  2HMO A;  3GOB A;  4NBF D;  4NB8 D;  2D2C D;  1NTK E;  1EZV E;  2GBW A;  4AAY B;  4AIV A;  1O7H A;  2FYN C;  1O7P A;  2XSO A;  4HM2 A;  1SQP E;  5BOK A;  2NWF A;  1KB9 E;  4PD4 E;  1KYO E;  2JO6 A;  1SQQ E;  2DE5 D;  2ZYL A;  3DQY A;  4P1B H;  1NYK A;  1BCC E;  3EN1 A;  2FYU E;  2ZT9 D;  2QJP C;  2NVF A;  4QUQ A;  1NTM E;  3N0Q A;  3VMH D;  3L74 E;  1EG9 A;  3L70 E;  2GBX A;  3L75 E;  1G8J B; 
#chains in the Genus database with same CATH topology
 1VM9 A;  2NVG A;  3CX5 E;  3VMI D;  3GTS A;  4QDD A;  1RIE A;  2IBZ E;  4H44 D;  3D89 A;  5KKZ C;  2E76 D;  4EMJ B;  2E4Q A;  2BCC E;  4QUP A;  3GTE A;  3GZY A;  3VCA A;  1FQT A;  1NU1 E;  1O7G A;  1VCK A;  2NUK A;  2YFI A;  5AEW A;  1NDO A;  3CXH E;  4HM5 A;  4NB9 D;  2HMK A;  1G8K B;  2A06 E;  2XSH A;  4QUR A;  1P84 E;  4HM7 A;  1RFS A;  4NBG D;  2E75 D;  4NBB D;  5KLV E;  4NBE D;  3VCP A;  1SJG A;  5AEU A;  1SQB E;  1ULI A;  2B24 A;  1L0L E;  3L72 E;  2HMN A;  2JZA A;  3GL0 A;  1BE3 E;  1UUW A;  2B1X A;  3H1H E;  3GL2 A;  2YFJ A;  2E74 D;  3BCC E;  2YFL A;  3GCE A;  3FOU A;  5KLI C;  4HKV A;  2XR8 A;  2CKF A;  4HJL A;  2BMO A;  4HM4 A;  2DE7 D;  3CWB E;  3GB4 A;  2HMJ A;  4NBH D;  4H13 D;  2QJK C;  2I7F A;  1PP9 E;  3H1J E;  2E4P A;  1VF5 D;  2HMM A;  4QDF B;  3EQQ A;  1NTZ E;  1UUV A;  3L71 E;  2BMR A;  1JM1 A;  2XRX A;  5CXM A;  3H1L E;  4QDC A;  2BMQ A;  4HM8 A;  2NVE A;  4OGQ D;  4HM0 A;  1ZRT E;  4PV1 D;  4HM6 A;  4U3F E;  1WQL A;  2QPZ A;  3C0D A;  2YVJ B;  4P1C H;  1O7W A;  3L73 E;  2DE6 D;  3VMG D;  3GZX A;  4HM3 A;  2YIU C;  4QCK A;  5HL4 A;  3H1K E;  2HML A;  1PPJ E;  1Q90 C;  1O7M A;  1ULJ A;  2NUM A;  4QDF A;  1O7N A;  2Q3W A;  3H1I E;  4NBC D;  3AZC A;  1SQV E;  4NBD D;  3GKE A;  2QJY C;  3TGU E;  1L0N E;  4NBA D;  1SQX E;  4HM1 A;  4H0L D;  2HMO A;  3GOB A;  4NBF D;  4NB8 D;  2D2C D;  1NTK E;  1EZV E;  2GBW A;  4AAY B;  4AIV A;  1O7H A;  2FYN C;  1O7P A;  2XSO A;  4HM2 A;  1SQP E;  5BOK A;  2NWF A;  1KB9 E;  4PD4 E;  1KYO E;  2JO6 A;  1SQQ E;  2DE5 D;  2ZYL A;  3DQY A;  4P1B H;  1NYK A;  1BCC E;  3EN1 A;  2FYU E;  2ZT9 D;  2QJP C;  2NVF A;  4QUQ A;  1NTM E;  3N0Q A;  3VMH D;  3L74 E;  1EG9 A;  3L70 E;  2GBX A;  3L75 E;  1G8J B; 
#chains in the Genus database with same CATH homology
 1VM9 A;  2NVG A;  3CX5 E;  3VMI D;  3GTS A;  4QDD A;  1RIE A;  2IBZ E;  4H44 D;  3D89 A;  5KKZ C;  2E76 D;  4EMJ B;  2E4Q A;  2BCC E;  4QUP A;  3GTE A;  3GZY A;  3VCA A;  1FQT A;  1NU1 E;  1O7G A;  1VCK A;  2NUK A;  2YFI A;  5AEW A;  1NDO A;  3CXH E;  4HM5 A;  4NB9 D;  2HMK A;  1G8K B;  2A06 E;  2XSH A;  4QUR A;  1P84 E;  4HM7 A;  1RFS A;  4NBG D;  2E75 D;  4NBB D;  5KLV E;  4NBE D;  3VCP A;  1SJG A;  5AEU A;  1SQB E;  1ULI A;  2B24 A;  1L0L E;  3L72 E;  2HMN A;  2JZA A;  3GL0 A;  1BE3 E;  1UUW A;  2B1X A;  3H1H E;  3GL2 A;  2YFJ A;  2E74 D;  3BCC E;  2YFL A;  3GCE A;  3FOU A;  5KLI C;  4HKV A;  2XR8 A;  2CKF A;  4HJL A;  2BMO A;  4HM4 A;  2DE7 D;  3CWB E;  3GB4 A;  2HMJ A;  4NBH D;  4H13 D;  2QJK C;  2I7F A;  1PP9 E;  3H1J E;  2E4P A;  1VF5 D;  2HMM A;  4QDF B;  3EQQ A;  1NTZ E;  1UUV A;  3L71 E;  2BMR A;  1JM1 A;  2XRX A;  5CXM A;  3H1L E;  4QDC A;  2BMQ A;  4HM8 A;  2NVE A;  4OGQ D;  4HM0 A;  1ZRT E;  4PV1 D;  4HM6 A;  4U3F E;  1WQL A;  2QPZ A;  3C0D A;  2YVJ B;  4P1C H;  1O7W A;  3L73 E;  2DE6 D;  3VMG D;  3GZX A;  4HM3 A;  2YIU C;  4QCK A;  5HL4 A;  3H1K E;  2HML A;  1PPJ E;  1Q90 C;  1O7M A;  1ULJ A;  2NUM A;  4QDF A;  1O7N A;  2Q3W A;  3H1I E;  4NBC D;  3AZC A;  1SQV E;  4NBD D;  3GKE A;  2QJY C;  3TGU E;  1L0N E;  4NBA D;  1SQX E;  4HM1 A;  4H0L D;  2HMO A;  3GOB A;  4NBF D;  4NB8 D;  2D2C D;  1NTK E;  1EZV E;  2GBW A;  4AAY B;  4AIV A;  1O7H A;  2FYN C;  1O7P A;  2XSO A;  4HM2 A;  1SQP E;  5BOK A;  2NWF A;  1KB9 E;  4PD4 E;  1KYO E;  2JO6 A;  1SQQ E;  2DE5 D;  2ZYL A;  3DQY A;  4P1B H;  1NYK A;  1BCC E;  3EN1 A;  2FYU E;  2ZT9 D;  2QJP C;  2NVF A;  4QUQ A;  1NTM E;  3N0Q A;  3VMH D;  3L74 E;  1EG9 A;  3L70 E;  2GBX A;  3L75 E;  1G8J B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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