4AIWA

Gapr-1 with bound inositol hexakisphosphate
Total Genus 56
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
151
structure length
150
Chain Sequence
SASKQFHNEVLKAHNEYRQKHGVPPLKLKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPPKK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lipid binding protein
molecule keywords GOLGI-ASSOCIATED PLANT PATHOGENESIS-RELATED PROTEIN 1
publication title Interaction of Gapr-1 with Lipid Bilayers is Regulated by Alternative Homodimerization.
pubmed doi rcsb
source organism Homo sapiens
total genus 56
structure length 150
sequence length 151
ec nomenclature
pdb deposition date 2012-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 4aiwA00
1U53A 4AIWA 3Q2RA 1RC9A 4NUKA 4NUNA 3U3LC 3S6UA 1XTAA 1XX5A 3S6VA 4D53A 1WVRA 4NUOA 2EPFA 2DDBA 3U3UC 5JYSA 4H0AA 4G2UA 4NUIA 1CFEA 2DDAA 5ETEA 3S6SA 3Q2UA 3MZ8A 3U3NC 2VZNA 1QNXA 3NT8A 2GIZA 4IFAA 4P27A 4LY5A 1SMBA 4TPVA
chains in the Genus database with same CATH superfamily
1U53A 4AIWA 3Q2RA 1RC9A 4NUKA 4NUNA 3U3LC 3S6UA 1XTAA 1XX5A 3S6VA 4D53A 1WVRA 4NUOA 2EPFA 2DDBA 3U3UC 5JYSA 4H0AA 4G2UA 4NUIA 1CFEA 2DDAA 5ETEA 3S6SA 3Q2UA 3MZ8A 3U3NC 2VZNA 1QNXA 3NT8A 2GIZA 4IFAA 4P27A 4LY5A 1SMBA 4TPVA
chains in the Genus database with same CATH topology
1U53A 4AIWA 3Q2RA 1RC9A 4NUKA 4NUNA 3U3LC 3S6UA 1XTAA 1XX5A 3S6VA 4D53A 1WVRA 4NUOA 2EPFA 2DDBA 3U3UC 5JYSA 4H0AA 4G2UA 4NUIA 1CFEA 2DDAA 5ETEA 3S6SA 3Q2UA 3MZ8A 3U3NC 2VZNA 1QNXA 3NT8A 2GIZA 4IFAA 4P27A 4LY5A 1SMBA 4TPVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U53 A;  4AIW A;  3Q2R A;  1RC9 A;  4NUK A;  4NUN A;  3U3L C;  3S6U A;  1XTA A;  1XX5 A;  3S6V A;  4D53 A;  1WVR A;  4NUO A;  2EPF A;  2DDB A;  3U3U C;  5JYS A;  4H0A A;  4G2U A;  4NUI A;  1CFE A;  2DDA A;  5ETE A;  3S6S A;  3Q2U A;  3MZ8 A;  3U3N C;  2VZN A;  1QNX A;  3NT8 A;  2GIZ A;  4IFA A;  4P27 A;  4LY5 A;  1SMB A;  4TPV A; 
#chains in the Genus database with same CATH topology
 1U53 A;  4AIW A;  3Q2R A;  1RC9 A;  4NUK A;  4NUN A;  3U3L C;  3S6U A;  1XTA A;  1XX5 A;  3S6V A;  4D53 A;  1WVR A;  4NUO A;  2EPF A;  2DDB A;  3U3U C;  5JYS A;  4H0A A;  4G2U A;  4NUI A;  1CFE A;  2DDA A;  5ETE A;  3S6S A;  3Q2U A;  3MZ8 A;  3U3N C;  2VZN A;  1QNX A;  3NT8 A;  2GIZ A;  4IFA A;  4P27 A;  4LY5 A;  1SMB A;  4TPV A; 
#chains in the Genus database with same CATH homology
 1U53 A;  4AIW A;  3Q2R A;  1RC9 A;  4NUK A;  4NUN A;  3U3L C;  3S6U A;  1XTA A;  1XX5 A;  3S6V A;  4D53 A;  1WVR A;  4NUO A;  2EPF A;  2DDB A;  3U3U C;  5JYS A;  4H0A A;  4G2U A;  4NUI A;  1CFE A;  2DDA A;  5ETE A;  3S6S A;  3Q2U A;  3MZ8 A;  3U3N C;  2VZN A;  1QNX A;  3NT8 A;  2GIZ A;  4IFA A;  4P27 A;  4LY5 A;  1SMB A;  4TPV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...