4AKVA

Crystal structure of human sorting nexin 33 (snx33)
Total Genus 140
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
140
sequence length
363
structure length
345
Chain Sequence
MYSIEMGPRGPQWKANPHPFACSVEDPISYKLTPTHAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYDN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords SORTING NEXIN-33
publication title Structure of Human Sorting Nexin 33
rcsb
source organism Homo sapiens
total genus 140
structure length 345
sequence length 363
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-02-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4akvA02
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 4akvA01
2RAKA 4DCNC 4ATMA 4PZGA 4PQPA 2FICA 3QWEA 3M3WA 3SYVA 2D1LA 4I1QA 4AKVA 4OXWA 1Y2OA 4PQOA 4IKBA 4IKBB 3QNIA 3ACOA 3IQ2A 3CAZA 2DYBA 3HAHA 2C08A 2Q13A 3Q84A 4BNEA 2AR5A 4ON3A 2CSKA 3OK8A 2CZOA 3HPBA 3HAJA 1H6HA 2L73A 4P2JA 2ETTA 2D4CA 4DYLA 2I4KA 2Z0OA 2RAJA 2X3VA 1KMDA 2X3WA 1I4DA 2Z0NA 3I2WA 2Z0VA 3LUIA 2ELBA 2REDA 2YPSA 2V14A 5C5BA 1KQ6A 3P0CA 1O7KA 2WWEA 5C5BB 2EFKA 4P2IA 4AVMA 2IWLX 4H8SA 4HASA 3QE6A 1I4LA 1I49A 4WPCA 3PLTA 1XTNA 4NQIA 1WDZA 1OCSA 3DYTA 3G9GA 2V0OA 3ABHA 1OCUA 2RAIA 3SOGA 2Q12A 1X03A 3FOGA 4IKDA 1I4TA 1GD5A 4FZSA 4WPEA 4NSWA 2EFLA 3Q0KA 1XTEA 4BGJA 4AZ9A 2X3XA 3HPCX 3LLLA 3HAIA 1X04A 1ZWWA 1URUA 2V6VA 2REAA 2YKTA
chains in the Genus database with same CATH superfamily
4AZ7A 2OZNB 2PMRA 4ATMA 3D2EA 4PZGA 3LVTA 2F1AA 4PQPA 3QWEA 2LM0A 2D1LA 1E1DA 3BVXA 4I1QA 2LXYA 4JNEA 2WYHA 1TQSA 2O0I1 2F1BA 4IKBA 4PQOA 2YLAA 3CVRA 3O3MB 2FYVA 3QNIA 4E81A 3BLBA 3IQ2A 4EZPA 3DX2A 4JL9A 1SU8A 3OK8A 3HPBA 1H6HA 1U00A 4H6HA 3EJRA 4HY9A 5TKYA 2I4KA 2YL9A 3C7NA 2GF4A 2X3WA 4EZZA 2EX3B 3LUIA 3BUQA 1O7DB 3L3PA 4IWOA 2YPSA 4HR1B 2YI9A 4AZCA 1O7KA 2ZXQA 3I39X 2EFKA 2F7QA 2X5CA 3B51X 4JN4A 2WINM 4AZHA 4IM0A 4R5KA 3DPQA 3PLTA 5FIGA 3OWGA 4NQIA 2OW6A 1WDZA 4EZUA 1OCSA 3ABHA 1OCUA 2YIAA 1E9VA 3L3OM 3SOGA 2N3KA 3FOGA 1GD5A 3BVTA 4AZ9A 2X3XA 4R5GA 5E84A 2PY6A 4KIKB 4R5IA 4IW0A 3DPOA 2RAKA 3DX3A 2FICA 4FM3A 1E2UA 4JWCA 3RV0A 3KAVA 1HTYA 2ALWA 2RT6A 2JNSA 2YLLA 3ACOA 3T46A 3Q84A 4BNEA 1TQWA 3EJUA 2AR5A 2CSKA 1QX1A 3BVWA 2QKWA 2ETTA 1MJGA 1W9MA 2Z0OA 4F00A 2RAJA 2EWFA 2Z0NA 1GNTA 3I04A 3QNJA 4G6QA 4D8JA 3ER9B 4EZRA 1QWUA 2ELBA 1TQTA 4HR1A 1PS3A 3CZNA 1KQ6A 3EJQA 2IWLX 4JLCA 4EZQA 3UITA 1JQKA 3DX4A 3T49A 1QWNA 2JNKA 3BVVA 3DX0A 3BUPA 3D52A 2NCZA 2F18A 3B52X 4AZBA 3DYTA 2V0OA 2RAIA 2QXLA 3BUIA 1X03A 2WYIA 3O3OB 5FLEX 4R5JA 4FZSA 3ERCC 4NSWA 2F7PA 1XTEA 4BGJA 4HYBA 3HPCX 4M0MA 3HAIA 3VEAA 1X04A 2F7RA 4KIKA 4JNFA 4EZOA 3DX1A 4IM2A 4DCNC 4R5LA 3M3WA 1GNLA 3D4ZA 4FZPA 3KDRA 3CKDA 2QFFA 2MI7A 4PO2A 4EZYA 2DYBA 1ZYLA 2C08A 4AZCB 2CZOA 2OW7A 3HAJA 4P2JA 1SU7A 4E3CA 2X3VA 1I4DA 3BUBA 3EJSA 3I2WA 3KAWA 2Z0VA 4IM3A 2REDA 3T48A 2YL5A 2V14A 1LQ7A 2WWEA 5C5BB 1HXKA 3LMFA 3ER8C 1SU6A 2Z8YA 4AVMA 4F01A 3QE6A 3D50A 4JWDA 4IWQA 4IWPA 3RPMA 1I49A 3VKHA 4EZWA 3T47A 3B53X 3I01A 4UDYX 2Q12A 4IKDA 3O3NB 1SUFA 4EZTA 4AZ5A 3D4YA 3DPPA 3QA8A 3ZEDA 1TQUA 3F7WA 1URUA 2V6VA 2YL8A 4EZVA 2REAA 1YWMA 2ND0A 2GA9D 3SYVA 4AKVA 4OXWA 3BVUA 1Y2OA 4AZGA 1OAOA 4IKBB 4UDXX 2YL6A 3CAZA 3A98A 3HAHA 2Q13A 1R5EA 3VEBA 1DKYA 2ND1A 4ON3A 3EJPA 2L73A 2OBMA 2D4CA 4NPHA 3RV1A 4DYLA 3DDFA 1O7DC 2F7OA 1KMDA 4H6IA 3D2FA 2OO2A 4JWIA 4EZNA 5C5BA 3P0CA 1TQVA 3CZSA 3EJTA 4P2IA 4H8SA 4HASA 1I4LA 1OA1A 2YI8A 4JWEA 4EZXA 3FD9A 2OBLA 1GN9A 4WPCA 3T4AG 3CV5A 1HWWA 3D51A 1XTNA 3BUDA 1DKZA 3G9GA 1R34A 3OHXM 1R33A 5KBPA 4AZ6A 1I4TA 3GI7A 3DDGA 4WPEA 2YIVX 2KHOA 4FZOA 2EFLA 1UPXA 3Q0KA 1DKXA 3LLLA 4B9QA 1ZWWA 4EZSA 2YIBA 2YKTA 1OA0A 4AZIA 2GAFD
chains in the Genus database with same CATH topology
2RAKA 4DCNC 4ATMA 4PZGA 4PQPA 2FICA 3QWEA 3M3WA 3SYVA 2D1LA 4I1QA 4AKVA 4OXWA 1Y2OA 4PQOA 4IKBA 4IKBB 3QNIA 3ACOA 3IQ2A 3CAZA 2DYBA 3HAHA 2C08A 2Q13A 3Q84A 4BNEA 2AR5A 4ON3A 2CSKA 3OK8A 2CZOA 3HPBA 3HAJA 1H6HA 2L73A 4P2JA 2ETTA 2D4CA 4DYLA 2I4KA 2Z0OA 2RAJA 2X3VA 1KMDA 2X3WA 1I4DA 2Z0NA 3I2WA 2Z0VA 3LUIA 2ELBA 2REDA 2YPSA 2V14A 5C5BA 1KQ6A 3P0CA 1O7KA 2WWEA 5C5BB 2EFKA 4P2IA 4AVMA 2IWLX 4H8SA 4HASA 3QE6A 1I4LA 1I49A 4WPCA 3PLTA 1XTNA 4NQIA 1WDZA 1OCSA 3DYTA 3G9GA 2V0OA 3ABHA 1OCUA 2RAIA 3SOGA 2Q12A 1X03A 3FOGA 4IKDA 1I4TA 1GD5A 4FZSA 4WPEA 4NSWA 2EFLA 3Q0KA 1XTEA 4BGJA 4AZ9A 2X3XA 3HPCX 3LLLA 3HAIA 1X04A 1ZWWA 1URUA 2V6VA 2REAA 2YKTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RAK A;  4DCN C;  4ATM A;  4PZG A;  4PQP A;  2FIC A;  3QWE A;  3M3W A;  3SYV A;  2D1L A;  4I1Q A;  4AKV A;  4OXW A;  1Y2O A;  4PQO A;  4IKB A;  4IKB B;  3QNI A;  3ACO A;  3IQ2 A;  3CAZ A;  2DYB A;  3HAH A;  2C08 A;  2Q13 A;  3Q84 A;  4BNE A;  2AR5 A;  4ON3 A;  2CSK A;  3OK8 A;  2CZO A;  3HPB A;  3HAJ A;  1H6H A;  2L73 A;  4P2J A;  2ETT A;  2D4C A;  4DYL A;  2I4K A;  2Z0O A;  2RAJ A;  2X3V A;  1KMD A;  2X3W A;  1I4D A;  2Z0N A;  3I2W A;  2Z0V A;  3LUI A;  2ELB A;  2RED A;  2YPS A;  2V14 A;  5C5B A;  1KQ6 A;  3P0C A;  1O7K A;  2WWE A;  5C5B B;  2EFK A;  4P2I A;  4AVM A;  2IWL X;  4H8S A;  4HAS A;  3QE6 A;  1I4L A;  1I49 A;  4WPC A;  3PLT A;  1XTN A;  4NQI A;  1WDZ A;  1OCS A;  3DYT A;  3G9G A;  2V0O A;  3ABH A;  1OCU A;  2RAI A;  3SOG A;  2Q12 A;  1X03 A;  3FOG A;  4IKD A;  1I4T A;  1GD5 A;  4FZS A;  4WPE A;  4NSW A;  2EFL A;  3Q0K A;  1XTE A;  4BGJ A;  4AZ9 A;  2X3X A;  3HPC X;  3LLL A;  3HAI A;  1X04 A;  1ZWW A;  1URU A;  2V6V A;  2REA A;  2YKT A; 
#chains in the Genus database with same CATH topology
 4AZ7 A;  2OZN B;  2PMR A;  4ATM A;  3D2E A;  4PZG A;  3LVT A;  2F1A A;  4PQP A;  3QWE A;  2LM0 A;  2D1L A;  1E1D A;  3BVX A;  4I1Q A;  2LXY A;  4JNE A;  2WYH A;  1TQS A;  2O0I 1;  2F1B A;  4IKB A;  4PQO A;  2YLA A;  3CVR A;  3O3M B;  2FYV A;  3QNI A;  4E81 A;  3BLB A;  3IQ2 A;  4EZP A;  3DX2 A;  4JL9 A;  1SU8 A;  3OK8 A;  3HPB A;  1H6H A;  1U00 A;  4H6H A;  3EJR A;  4HY9 A;  5TKY A;  2I4K A;  2YL9 A;  3C7N A;  2GF4 A;  2X3W A;  4EZZ A;  2EX3 B;  3LUI A;  3BUQ A;  1O7D B;  3L3P A;  4IWO A;  2YPS A;  4HR1 B;  2YI9 A;  4AZC A;  1O7K A;  2ZXQ A;  3I39 X;  2EFK A;  2F7Q A;  2X5C A;  3B51 X;  4JN4 A;  2WIN M;  4AZH A;  4IM0 A;  4R5K A;  3DPQ A;  3PLT A;  5FIG A;  3OWG A;  4NQI A;  2OW6 A;  1WDZ A;  4EZU A;  1OCS A;  3ABH A;  1OCU A;  2YIA A;  1E9V A;  3L3O M;  3SOG A;  2N3K A;  3FOG A;  1GD5 A;  3BVT A;  4AZ9 A;  2X3X A;  4R5G A;  5E84 A;  2PY6 A;  4KIK B;  4R5I A;  4IW0 A;  3DPO A;  2RAK A;  3DX3 A;  2FIC A;  4FM3 A;  1E2U A;  4JWC A;  3RV0 A;  3KAV A;  1HTY A;  2ALW A;  2RT6 A;  2JNS A;  2YLL A;  3ACO A;  3T46 A;  3Q84 A;  4BNE A;  1TQW A;  3EJU A;  2AR5 A;  2CSK A;  1QX1 A;  3BVW A;  2QKW A;  2ETT A;  1MJG A;  1W9M A;  2Z0O A;  4F00 A;  2RAJ A;  2EWF A;  2Z0N A;  1GNT A;  3I04 A;  3QNJ A;  4G6Q A;  4D8J A;  3ER9 B;  4EZR A;  1QWU A;  2ELB A;  1TQT A;  4HR1 A;  1PS3 A;  3CZN A;  1KQ6 A;  3EJQ A;  2IWL X;  4JLC A;  4EZQ A;  3UIT A;  1JQK A;  3DX4 A;  3T49 A;  1QWN A;  2JNK A;  3BVV A;  3DX0 A;  3BUP A;  3D52 A;  2NCZ A;  2F18 A;  3B52 X;  4AZB A;  3DYT A;  2V0O A;  2RAI A;  2QXL A;  3BUI A;  1X03 A;  2WYI A;  3O3O B;  5FLE X;  4R5J A;  4FZS A;  3ERC C;  4NSW A;  2F7P A;  1XTE A;  4BGJ A;  4HYB A;  3HPC X;  4M0M A;  3HAI A;  3VEA A;  1X04 A;  2F7R A;  4KIK A;  4JNF A;  4EZO A;  3DX1 A;  4IM2 A;  4DCN C;  4R5L A;  3M3W A;  1GNL A;  3D4Z A;  4FZP A;  3KDR A;  3CKD A;  2QFF A;  2MI7 A;  4PO2 A;  4EZY A;  2DYB A;  1ZYL A;  2C08 A;  4AZC B;  2CZO A;  2OW7 A;  3HAJ A;  4P2J A;  1SU7 A;  4E3C A;  2X3V A;  1I4D A;  3BUB A;  3EJS A;  3I2W A;  3KAW A;  2Z0V A;  4IM3 A;  2RED A;  3T48 A;  2YL5 A;  2V14 A;  1LQ7 A;  2WWE A;  5C5B B;  1HXK A;  3LMF A;  3ER8 C;  1SU6 A;  2Z8Y A;  4AVM A;  4F01 A;  3QE6 A;  3D50 A;  4JWD A;  4IWQ A;  4IWP A;  3RPM A;  1I49 A;  3VKH A;  4EZW A;  3T47 A;  3B53 X;  3I01 A;  4UDY X;  2Q12 A;  4IKD A;  3O3N B;  1SUF A;  4EZT A;  4AZ5 A;  3D4Y A;  3DPP A;  3QA8 A;  3ZED A;  1TQU A;  3F7W A;  1URU A;  2V6V A;  2YL8 A;  4EZV A;  2REA A;  1YWM A;  2ND0 A;  2GA9 D;  3SYV A;  4AKV A;  4OXW A;  3BVU A;  1Y2O A;  4AZG A;  1OAO A;  4IKB B;  4UDX X;  2YL6 A;  3CAZ A;  3A98 A;  3HAH A;  2Q13 A;  1R5E A;  3VEB A;  1DKY A;  2ND1 A;  4ON3 A;  3EJP A;  2L73 A;  2OBM A;  2D4C A;  4NPH A;  3RV1 A;  4DYL A;  3DDF A;  1O7D C;  2F7O A;  1KMD A;  4H6I A;  3D2F A;  2OO2 A;  4JWI A;  4EZN A;  5C5B A;  3P0C A;  1TQV A;  3CZS A;  3EJT A;  4P2I A;  4H8S A;  4HAS A;  1I4L A;  1OA1 A;  2YI8 A;  4JWE A;  4EZX A;  3FD9 A;  2OBL A;  1GN9 A;  4WPC A;  3T4A G;  3CV5 A;  1HWW A;  3D51 A;  1XTN A;  3BUD A;  1DKZ A;  3G9G A;  1R34 A;  3OHX M;  1R33 A;  5KBP A;  4AZ6 A;  1I4T A;  3GI7 A;  3DDG A;  4WPE A;  2YIV X;  2KHO A;  4FZO A;  2EFL A;  1UPX A;  3Q0K A;  1DKX A;  3LLL A;  4B9Q A;  1ZWW A;  4EZS A;  2YIB A;  2YKT A;  1OA0 A;  4AZI A;  2GAF D; 
#chains in the Genus database with same CATH homology
 2RAK A;  4DCN C;  4ATM A;  4PZG A;  4PQP A;  2FIC A;  3QWE A;  3M3W A;  3SYV A;  2D1L A;  4I1Q A;  4AKV A;  4OXW A;  1Y2O A;  4PQO A;  4IKB A;  4IKB B;  3QNI A;  3ACO A;  3IQ2 A;  3CAZ A;  2DYB A;  3HAH A;  2C08 A;  2Q13 A;  3Q84 A;  4BNE A;  2AR5 A;  4ON3 A;  2CSK A;  3OK8 A;  2CZO A;  3HPB A;  3HAJ A;  1H6H A;  2L73 A;  4P2J A;  2ETT A;  2D4C A;  4DYL A;  2I4K A;  2Z0O A;  2RAJ A;  2X3V A;  1KMD A;  2X3W A;  1I4D A;  2Z0N A;  3I2W A;  2Z0V A;  3LUI A;  2ELB A;  2RED A;  2YPS A;  2V14 A;  5C5B A;  1KQ6 A;  3P0C A;  1O7K A;  2WWE A;  5C5B B;  2EFK A;  4P2I A;  4AVM A;  2IWL X;  4H8S A;  4HAS A;  3QE6 A;  1I4L A;  1I49 A;  4WPC A;  3PLT A;  1XTN A;  4NQI A;  1WDZ A;  1OCS A;  3DYT A;  3G9G A;  2V0O A;  3ABH A;  1OCU A;  2RAI A;  3SOG A;  2Q12 A;  1X03 A;  3FOG A;  4IKD A;  1I4T A;  1GD5 A;  4FZS A;  4WPE A;  4NSW A;  2EFL A;  3Q0K A;  1XTE A;  4BGJ A;  4AZ9 A;  2X3X A;  3HPC X;  3LLL A;  3HAI A;  1X04 A;  1ZWW A;  1URU A;  2V6V A;  2REA A;  2YKT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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