4ALTA

X-ray photoreduction of polysaccharide monooxygenase cbm33
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
166
structure length
166
Chain Sequence
HGYVASPGSRAFFGSSAGGNLNTNVGRAQWEPQSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWDYYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGDTVNAFYQAIDVNIQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chitin-binding protein
molecule keywords CHITIN BINDING PROTEIN
publication title Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
pubmed doi rcsb
source organism Enterococcus faecalis
total genus 47
structure length 166
sequence length 166
ec nomenclature ec 1.14.99.53: Lytic chitin monooxygenase.
pdb deposition date 2012-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.50 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 chitin-binding protein cbp21 4altA00
5IJUA 4ALCA 4OY8A 5AA7A 3UAMA 4A02A 2YOWA 4OY7A 4OY6A 2YOXA 2LHSA 5FTZA 2XWXA 2BENA 4ALTA 5FJQA 4ALRA 4ALSA 4ALEA 2YOYA 4ALQA 2BEMA 4GBOA
chains in the Genus database with same CATH superfamily
1HH4D 4RE1A 5DQEA 5ACHA 4GOKC 5E8FA 1QVYA 4D7UA 1DOAB 1KSHB 5AA7A 4JV8B 4OY7A 2YOXA 2XWXA 2JHUA 2JHZA 3GQQA 4LN0A 5FJQA 2JHXA 3EIIA 4JV6B 2VTCA 4ALEA 5HNOA 5TB5B 1FT3A 4QI8A 5IJUA 2JHYA 4OY8A 5HNPA 2JHTA 1DS6B 1FSTA 4MAIA 3UAMA 4A02A 5E80A 2YOWA 1KSJB 1FSOA 3L15A 4GOJC 4JVBB 1GDFA 2BENA 3JUAA 4B5QA 1KMTA 2YOYA 2BEMA 1RHOA 3EJAA 4ALCA 4EIRA 5EMWA 5F2UA 5ACIA 4EISA 2JHWA 3KYSA 4OY6A 4MAHA 3ZUDA 2LHSA 4JVFB 1FT0A 2JHSA 5ACFA 2YETA 3T5IA 4ALSA 5TARB 5EMVA 2JHVA 2R5OA 4ALQA 4ALRA 5L7KA 1AJWA 3T5GB 5ACGA 5DQ8A 5FOHA 1KSGB 5ACJA 2JI0A 4JHPB 4F38B 5FTZA 2BXWA 4ALTA 3RBQA 4D7VA 4EISB 4FMRA 5HGUA 4GBOA
chains in the Genus database with same CATH topology
5IJUA 4ALCA 4OY8A 5AA7A 3UAMA 4A02A 2YOWA 4OY7A 4OY6A 2YOXA 2LHSA 5FTZA 2XWXA 2BENA 4ALTA 5FJQA 4ALRA 4ALSA 4ALEA 2YOYA 4ALQA 2BEMA 4GBOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IJU A;  4ALC A;  4OY8 A;  5AA7 A;  3UAM A;  4A02 A;  2YOW A;  4OY7 A;  4OY6 A;  2YOX A;  2LHS A;  5FTZ A;  2XWX A;  2BEN A;  4ALT A;  5FJQ A;  4ALR A;  4ALS A;  4ALE A;  2YOY A;  4ALQ A;  2BEM A;  4GBO A; 
#chains in the Genus database with same CATH topology
 1HH4 D;  4RE1 A;  5DQE A;  5ACH A;  4GOK C;  5E8F A;  1QVY A;  4D7U A;  1DOA B;  1KSH B;  5AA7 A;  4JV8 B;  4OY7 A;  2YOX A;  2XWX A;  2JHU A;  2JHZ A;  3GQQ A;  4LN0 A;  5FJQ A;  2JHX A;  3EII A;  4JV6 B;  2VTC A;  4ALE A;  5HNO A;  5TB5 B;  1FT3 A;  4QI8 A;  5IJU A;  2JHY A;  4OY8 A;  5HNP A;  2JHT A;  1DS6 B;  1FST A;  4MAI A;  3UAM A;  4A02 A;  5E80 A;  2YOW A;  1KSJ B;  1FSO A;  3L15 A;  4GOJ C;  4JVB B;  1GDF A;  2BEN A;  3JUA A;  4B5Q A;  1KMT A;  2YOY A;  2BEM A;  1RHO A;  3EJA A;  4ALC A;  4EIR A;  5EMW A;  5F2U A;  5ACI A;  4EIS A;  2JHW A;  3KYS A;  4OY6 A;  4MAH A;  3ZUD A;  2LHS A;  4JVF B;  1FT0 A;  2JHS A;  5ACF A;  2YET A;  3T5I A;  4ALS A;  5TAR B;  5EMV A;  2JHV A;  2R5O A;  4ALQ A;  4ALR A;  5L7K A;  1AJW A;  3T5G B;  5ACG A;  5DQ8 A;  5FOH A;  1KSG B;  5ACJ A;  2JI0 A;  4JHP B;  4F38 B;  5FTZ A;  2BXW A;  4ALT A;  3RBQ A;  4D7V A;  4EIS B;  4FMR A;  5HGU A;  4GBO A; 
#chains in the Genus database with same CATH homology
 5IJU A;  4ALC A;  4OY8 A;  5AA7 A;  3UAM A;  4A02 A;  2YOW A;  4OY7 A;  4OY6 A;  2YOX A;  2LHS A;  5FTZ A;  2XWX A;  2BEN A;  4ALT A;  5FJQ A;  4ALR A;  4ALS A;  4ALE A;  2YOY A;  4ALQ A;  2BEM A;  4GBO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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