4AMEA

Type iii antifreeze protein isoform hplc 12 t18a
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
ANQASVVANQLIPINTALALVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords PROTEIN (ANTIFREEZE PROTEIN TYPE III)
publication title Quantitative and qualitative analysis of type III antifreeze protein structure and function.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1999-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 4ameA00
7AMEA 5MSIA 1MSJA 9MSIA 4UR4A 1VLIA 1XUZA 4NY6A 2WQPA 3QF6A 1GZIA 3MSIA 9AMEA 1C89A 3CM4A 2MSIA 4IPJA 1C8AA 4IPIA 2SPGA 6AMEA 8MSIA 1B7IA 1WVOA 8AMEA 2JIAA 1JABA 1UCSA 2ZDRA 1B7JA 2LX3A 3G8RA 1MSIA 1OPSA 3NLAA 2LX2A 1XUUA 1KDEA 4MSIA 2AMEA 1B7KA 1KDFA 3AMEA 1HG7A 3FRNA 4UR6A 7MSIA 3RDNA 1AMEA 2MSJA 4AMEA 1EKLA 6MSIA
chains in the Genus database with same CATH superfamily
7AMEA 5MSIA 1MSJA 9MSIA 4UR4A 1VLIA 1XUZA 4NY6A 2WQPA 3QF6A 1GZIA 3MSIA 3LAZA 9AMEA 1C89A 3CM4A 2MSIA 4IPJA 1C8AA 4IPIA 2SPGA 6AMEA 8MSIA 1B7IA 1WVOA 8AMEA 2JIAA 1JABA 1UCSA 2ZDRA 1B7JA 2LX3A 3G8RA 3K3SA 1MSIA 1OPSA 3NLAA 2LX2A 1XUUA 1KDEA 4MSIA 2AMEA 1B7KA 1KDFA 3AMEA 1HG7A 3FRNA 4UR6A 7MSIA 3RDNA 1AMEA 2MSJA 4AMEA 1EKLA 6MSIA
chains in the Genus database with same CATH topology
7AMEA 5MSIA 1MSJA 9MSIA 4UR4A 1VLIA 1XUZA 4NY6A 2WQPA 3QF6A 1GZIA 3MSIA 9AMEA 1C89A 3CM4A 2MSIA 4IPJA 1C8AA 4IPIA 2SPGA 6AMEA 8MSIA 1B7IA 1WVOA 8AMEA 2JIAA 1JABA 1UCSA 2ZDRA 1B7JA 2LX3A 3G8RA 1MSIA 1OPSA 3NLAA 2LX2A 1XUUA 1KDEA 4MSIA 2AMEA 1B7KA 1KDFA 3AMEA 1HG7A 3FRNA 4UR6A 7MSIA 3RDNA 1AMEA 2MSJA 4AMEA 1EKLA 6MSIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 7AME A;  5MSI A;  1MSJ A;  9MSI A;  4UR4 A;  1VLI A;  1XUZ A;  4NY6 A;  2WQP A;  3QF6 A;  1GZI A;  3MSI A;  9AME A;  1C89 A;  3CM4 A;  2MSI A;  4IPJ A;  1C8A A;  4IPI A;  2SPG A;  6AME A;  8MSI A;  1B7I A;  1WVO A;  8AME A;  2JIA A;  1JAB A;  1UCS A;  2ZDR A;  1B7J A;  2LX3 A;  3G8R A;  1MSI A;  1OPS A;  3NLA A;  2LX2 A;  1XUU A;  1KDE A;  4MSI A;  2AME A;  1B7K A;  1KDF A;  3AME A;  1HG7 A;  3FRN A;  4UR6 A;  7MSI A;  3RDN A;  1AME A;  2MSJ A;  4AME A;  1EKL A;  6MSI A; 
#chains in the Genus database with same CATH topology
 7AME A;  5MSI A;  1MSJ A;  9MSI A;  4UR4 A;  1VLI A;  1XUZ A;  4NY6 A;  2WQP A;  3QF6 A;  1GZI A;  3MSI A;  3LAZ A;  9AME A;  1C89 A;  3CM4 A;  2MSI A;  4IPJ A;  1C8A A;  4IPI A;  2SPG A;  6AME A;  8MSI A;  1B7I A;  1WVO A;  8AME A;  2JIA A;  1JAB A;  1UCS A;  2ZDR A;  1B7J A;  2LX3 A;  3G8R A;  3K3S A;  1MSI A;  1OPS A;  3NLA A;  2LX2 A;  1XUU A;  1KDE A;  4MSI A;  2AME A;  1B7K A;  1KDF A;  3AME A;  1HG7 A;  3FRN A;  4UR6 A;  7MSI A;  3RDN A;  1AME A;  2MSJ A;  4AME A;  1EKL A;  6MSI A; 
#chains in the Genus database with same CATH homology
 7AME A;  5MSI A;  1MSJ A;  9MSI A;  4UR4 A;  1VLI A;  1XUZ A;  4NY6 A;  2WQP A;  3QF6 A;  1GZI A;  3MSI A;  9AME A;  1C89 A;  3CM4 A;  2MSI A;  4IPJ A;  1C8A A;  4IPI A;  2SPG A;  6AME A;  8MSI A;  1B7I A;  1WVO A;  8AME A;  2JIA A;  1JAB A;  1UCS A;  2ZDR A;  1B7J A;  2LX3 A;  3G8R A;  1MSI A;  1OPS A;  3NLA A;  2LX2 A;  1XUU A;  1KDE A;  4MSI A;  2AME A;  1B7K A;  1KDF A;  3AME A;  1HG7 A;  3FRN A;  4UR6 A;  7MSI A;  3RDN A;  1AME A;  2MSJ A;  4AME A;  1EKL A;  6MSI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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