4ATZA

Ad5 knob in complex with a designed ankyrin repeat protein
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
182
structure length
182
Chain Sequence
NDKLTLWTTPAPSPNCRLNAEKDAKLTLVLTKCGSQILATVSVLAVKGSLAPISGTVQSAHLIIRFDENGVLLNNSFLDPEYWNFRNGDLTEGNAVGFMPNLSAYPKSHGKTAKSNIVSQVYLNGDKTKPVTLTITLNGTQETGDTTPSAYSMSFSWDWSGHNYINEIFATSSYTFSYIAQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein/de novo protein
molecule keywords Fiber protein
publication title Development of a generic adenovirus delivery system based on structure-guided design of bispecific trimeric DARPin adapters.
pubmed doi rcsb
source organism Human adenovirus c serotype 5
total genus 41
structure length 182
sequence length 182
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2012-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 4atzA00
1NOBA 3CNCA 1QIUA 3EXWA 4XQAA 2J1KC 3EXVA 3BQ4A 1UXEA 4LIYA 3L88A 2W9LC 2J12A 2WGTA 1UXAA 3N0IA 4ZDGA 3L89A 2J2JA 1KACA 4WYJA 2BZUA 4XQBA 2WBWA 4K6WA 4ATZA 3QNDA 4K6TA 4XL8A 1QHVA 1KNBA 2O39A 3O8EA 4K6VA 1H7ZA 1P6AA 2WBVA 4K6UA 1P69A 2QLKA 2BZVA 3F0YA 2WGUA 1UXBA 2WSTA
chains in the Genus database with same CATH superfamily
1NOBA 3CNCA 1QIUA 3EXWA 2VRSA 2JJLA 4XQAA 2J1KC 4GU4A 3EXVA 3BQ4A 1UXEA 4GU3A 4LIYA 2OJ6A 3L88A 2W9LC 2J12A 2WGTA 3ZPFA 4CW8A 1UXAA 4XC5A 3N0IA 2OJ5A 4ZDGA 4D62A 3L89A 3ZPEA 2BT8A 2J2JA 1KACA 3S6XA 4WYJA 2BZUA 4XQBA 2WBWA 4K6WA 4ATZA 3QNDA 4K6TA 2BT7A 4XL8A 2IUNA 2WSTA 1QHVA 1KNBA 4ODBA 2O39A 2VTWA 3O8EA 4K6VA 4D63A 1H7ZA 1P6AA 1KKEA 2WBVA 4K6UA 1P69A 3EOYA 2QLKA 5MHSA 2BZVA 3F0YA 2WGUA 2BSFA 1UXBA 2IUMA
chains in the Genus database with same CATH topology
1NOBA 3CNCA 1QIUA 3EXWA 4XQAA 2J1KC 3EXVA 3BQ4A 1UXEA 4LIYA 3L88A 2W9LC 2J12A 2WGTA 1UXAA 3N0IA 4ZDGA 3L89A 2J2JA 1KACA 4WYJA 2BZUA 4XQBA 2WBWA 4K6WA 4ATZA 3QNDA 4K6TA 4XL8A 1QHVA 1KNBA 2O39A 3O8EA 4K6VA 1H7ZA 1P6AA 2WBVA 4K6UA 1P69A 2QLKA 2BZVA 3F0YA 2WGUA 1UXBA 2WSTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NOB A;  3CNC A;  1QIU A;  3EXW A;  4XQA A;  2J1K C;  3EXV A;  3BQ4 A;  1UXE A;  4LIY A;  3L88 A;  2W9L C;  2J12 A;  2WGT A;  1UXA A;  3N0I A;  4ZDG A;  3L89 A;  2J2J A;  1KAC A;  4WYJ A;  2BZU A;  4XQB A;  2WBW A;  4K6W A;  4ATZ A;  3QND A;  4K6T A;  4XL8 A;  1QHV A;  1KNB A;  2O39 A;  3O8E A;  4K6V A;  1H7Z A;  1P6A A;  2WBV A;  4K6U A;  1P69 A;  2QLK A;  2BZV A;  3F0Y A;  2WGU A;  1UXB A;  2WST A; 
#chains in the Genus database with same CATH topology
 1NOB A;  3CNC A;  1QIU A;  3EXW A;  2VRS A;  2JJL A;  4XQA A;  2J1K C;  4GU4 A;  3EXV A;  3BQ4 A;  1UXE A;  4GU3 A;  4LIY A;  2OJ6 A;  3L88 A;  2W9L C;  2J12 A;  2WGT A;  3ZPF A;  4CW8 A;  1UXA A;  4XC5 A;  3N0I A;  2OJ5 A;  4ZDG A;  4D62 A;  3L89 A;  3ZPE A;  2BT8 A;  2J2J A;  1KAC A;  3S6X A;  4WYJ A;  2BZU A;  4XQB A;  2WBW A;  4K6W A;  4ATZ A;  3QND A;  4K6T A;  2BT7 A;  4XL8 A;  2IUN A;  2WST A;  1QHV A;  1KNB A;  4ODB A;  2O39 A;  2VTW A;  3O8E A;  4K6V A;  4D63 A;  1H7Z A;  1P6A A;  1KKE A;  2WBV A;  4K6U A;  1P69 A;  3EOY A;  2QLK A;  5MHS A;  2BZV A;  3F0Y A;  2WGU A;  2BSF A;  1UXB A;  2IUM A; 
#chains in the Genus database with same CATH homology
 1NOB A;  3CNC A;  1QIU A;  3EXW A;  4XQA A;  2J1K C;  3EXV A;  3BQ4 A;  1UXE A;  4LIY A;  3L88 A;  2W9L C;  2J12 A;  2WGT A;  1UXA A;  3N0I A;  4ZDG A;  3L89 A;  2J2J A;  1KAC A;  4WYJ A;  2BZU A;  4XQB A;  2WBW A;  4K6W A;  4ATZ A;  3QND A;  4K6T A;  4XL8 A;  1QHV A;  1KNB A;  2O39 A;  3O8E A;  4K6V A;  1H7Z A;  1P6A A;  2WBV A;  4K6U A;  1P69 A;  2QLK A;  2BZV A;  3F0Y A;  2WGU A;  1UXB A;  2WST A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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