4AVMA

Crystal structure of the n-bar domain of human bridging integrator 2.
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
230
structure length
230
Chain Sequence
KQVQKKFSRAQEKVLQKLGKAVETKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLERQHSN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords BRIDGING INTEGRATOR 2
publication title Crystal Structure of the N-Bar Domain of Human Bridging Integrator 2.
rcsb
source organism Homo sapiens
total genus 110
structure length 230
sequence length 230
ec nomenclature
pdb deposition date 2012-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03114 BAR BAR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4avmA00
3Q84A 2X3WA 3G9GA 3HAJA 3SYVA 2FICA 1I4DA 1WDZA 3HAIA 3QNIA 3LLLA 2C08A 2Q13A 2D1LA 2RAKA 3QWEA 4ATMA 4DCNC 3OK8A 5C5BB 4AVMA 2Z0VA 1I4TA 1URUA 4DYLA 1ZWWA 3SOGA 1X04A 2X3VA 2RAJA 3M3WA 2EFKA 1I49A 3QE6A 1Y2OA 3HAHA 3I2WA 2Q12A 3CAZA 2YKTA 4WPCA 4BNEA 3DYTA 3PLTA 1I4LA 4H8SA 2ELBA 3ABHA 3ACOA 5C5BA 4NSWA 4FZSA 2EFLA 2D4CA 4WPEA 4I1QA 2RAIA 2V0OA 4NQIA 1X03A 2Z0NA 3Q0KA 4AKVA 2X3XA 2Z0OA
chains in the Genus database with same CATH superfamily
3RPMA 3L3PA 4F01A 2WYIA 2Z0VA 1OAOA 3LMFA 2X3VA 2LXYA 1Y2OA 2YL5A 2JNSA 1LQ7A 4JWCA 2YL8A 2GAFD 2WYHA 4HR1B 4JWIA 4M0MA 4E3CA 4AZGA 3T49A 4JNFA 3M3WA 1PS3A 4WPCA 3BLBA 2JNKA 1SU8A 2D4CA 4EZUA 4EZVA 4NQIA 3VEBA 1E9VA 1W9MA 4HR1A 1I49A 3DPPA 3ABHA 1TQTA 1OA0A 3Q0KA 3GI7A 3UITA 2Z8YA 4JLCA 2C08A 3ER9B 1R34A 3EJQA 4AZCA 3DX3A 2LM0A 2WINM 2OW7A 2YI9A 4R5LA 2YIAA 1MJGA 4FZOA 3CVRA 2MI7A 2X3WA 1QWUA 3G9GA 2FYVA 4EZQA 2GA9D 3EJUA 1O7DB 3KAVA 2PMRA 4EZXA 3PLTA 4H8SA 4KIKA 4R5KA 3B52X 2F7PA 3T4AG 1OA1A 2N3KA 3RV0A 4EZNA 3D2EA 1TQUA 4F00A 1GN9A 3LLLA 5E84A 4IWQA 3OWGA 1I4TA 3EJRA 4DYLA 3T48A 4FZPA 2RT6A 2RAJA 1DKYA 3D52A 2EFKA 3BVWA 3QNJA 4EZSA 1O7DC 3BVUA 3A98A 3BVTA 1QX1A 3DX2A 4EZRA 1ZWWA 2PY6A 2EX3B 3FD9A 3BVXA 3CV5A 4D8JA 4H6HA 4AZIA 4FZSA 4IM3A 4WPEA 2V0OA 3VKHA 2Z0NA 2Z0OA 1SU7A 3CZSA 4AZCB 4EZZA 1E2UA 2F1BA 1E1DA 1X04A 4UDXX 2QXLA 2ZXQA 3I2WA 4BNEA 2ND1A 4H6IA 3ACOA 3D50A 3T46A 2OBMA 2RAIA 4UDYX 2X3XA 2F7RA 3BUDA 3BUIA 4R5GA 2F7OA 4HYBA 3DDFA 2YIVX 2Q13A 4EZYA 4IWPA 4KIKB 3O3OB 1HWWA 2Q12A 4B9QA 2YIBA 1I4LA 2OZNB 1DKXA 5KBPA 3SYVA 4EZTA 2FICA 1JQKA 2O0I1 3D4ZA 2D1LA 3QWEA 4IM2A 4AVMA 3D4YA 4JNEA 3HAHA 3D51A 3DX4A 2ELBA 2NCZA 4I1QA 1SUFA 3CKDA 3BUBA 4EZWA 3I39X 2OO2A 1HXKA 5FLEX 2ND0A 1SU6A 1UPXA 2OW6A 2YKTA 4JWDA 3BUPA 1X03A 3EJSA 1YWMA 3HAIA 4AZ5A 3D2FA 3OK8A 4IM0A 1URUA 4AZBA 1DKZA 1R33A 1GNTA 2F18A 2GF4A 4EZPA 3QE6A 1QWNA 3DX0A 1TQWA 3L3OM 4FM3A 2EWFA 4E81A 4R5JA 3DX1A 4AKVA 4DCNC 3Q84A 2YL6A 1WDZA 3KDRA 3O3NB 3DDGA 2RAKA 4ATMA 4AZ7A 4NPHA 2F1AA 3C7NA 5FIGA 3F7WA 3BUQA 1ZYLA 3BVVA 1TQVA 4R5IA 3DPQA 1U00A 3O3MB 2QKWA 3ERCC 3I04A 3HAJA 3ZEDA 3B53X 1TQSA 5C5BB 3DPOA 1R5EA 2YL9A 3T47A 2EFLA 4HY9A 4AZHA 4PO2A 3RV1A 4IWOA 3I01A 2YI8A 4G6QA 3ER8C 3B51X 3CAZA 2F7QA 3DYTA 5C5BA 4NSWA 2YLAA 2KHOA 3KAWA 1HTYA 3VEAA 4JWEA 2X5CA 2ALWA 4IW0A 1I4DA 3LVTA 3QNIA 1GNLA 2QFFA 4JL9A 4EZOA 5TKYA 3EJPA 4AZ6A 4JN4A 3SOGA 2YLLA 3CZNA 3QA8A 3EJTA 2OBLA 3OHXM
chains in the Genus database with same CATH topology
3Q84A 2X3WA 3G9GA 3HAJA 3SYVA 2FICA 1I4DA 1WDZA 3HAIA 3QNIA 3LLLA 2C08A 2Q13A 2D1LA 2RAKA 3QWEA 4ATMA 4DCNC 3OK8A 5C5BB 4AVMA 2Z0VA 1I4TA 1URUA 4DYLA 1ZWWA 3SOGA 1X04A 2X3VA 2RAJA 3M3WA 2EFKA 1I49A 3QE6A 1Y2OA 3HAHA 3I2WA 2Q12A 3CAZA 2YKTA 4WPCA 4BNEA 3DYTA 3PLTA 1I4LA 4H8SA 2ELBA 3ABHA 3ACOA 5C5BA 4NSWA 4FZSA 2EFLA 2D4CA 4WPEA 4I1QA 2RAIA 2V0OA 4NQIA 1X03A 2Z0NA 3Q0KA 4AKVA 2X3XA 2Z0OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q84 A;  2X3W A;  3G9G A;  3HAJ A;  3SYV A;  2FIC A;  1I4D A;  1WDZ A;  3HAI A;  3QNI A;  3LLL A;  2C08 A;  2Q13 A;  2D1L A;  2RAK A;  3QWE A;  4ATM A;  4DCN C;  3OK8 A;  5C5B B;  4AVM A;  2Z0V A;  1I4T A;  1URU A;  4DYL A;  1ZWW A;  3SOG A;  1X04 A;  2X3V A;  2RAJ A;  3M3W A;  2EFK A;  1I49 A;  3QE6 A;  1Y2O A;  3HAH A;  3I2W A;  2Q12 A;  3CAZ A;  2YKT A;  4WPC A;  4BNE A;  3DYT A;  3PLT A;  1I4L A;  4H8S A;  2ELB A;  3ABH A;  3ACO A;  5C5B A;  4NSW A;  4FZS A;  2EFL A;  2D4C A;  4WPE A;  4I1Q A;  2RAI A;  2V0O A;  4NQI A;  1X03 A;  2Z0N A;  3Q0K A;  4AKV A;  2X3X A;  2Z0O A; 
#chains in the Genus database with same CATH topology
 3RPM A;  3L3P A;  4F01 A;  2WYI A;  2Z0V A;  1OAO A;  3LMF A;  2X3V A;  2LXY A;  1Y2O A;  2YL5 A;  2JNS A;  1LQ7 A;  4JWC A;  2YL8 A;  2GAF D;  2WYH A;  4HR1 B;  4JWI A;  4M0M A;  4E3C A;  4AZG A;  3T49 A;  4JNF A;  3M3W A;  1PS3 A;  4WPC A;  3BLB A;  2JNK A;  1SU8 A;  2D4C A;  4EZU A;  4EZV A;  4NQI A;  3VEB A;  1E9V A;  1W9M A;  4HR1 A;  1I49 A;  3DPP A;  3ABH A;  1TQT A;  1OA0 A;  3Q0K A;  3GI7 A;  3UIT A;  2Z8Y A;  4JLC A;  2C08 A;  3ER9 B;  1R34 A;  3EJQ A;  4AZC A;  3DX3 A;  2LM0 A;  2WIN M;  2OW7 A;  2YI9 A;  4R5L A;  2YIA A;  1MJG A;  4FZO A;  3CVR A;  2MI7 A;  2X3W A;  1QWU A;  3G9G A;  2FYV A;  4EZQ A;  2GA9 D;  3EJU A;  1O7D B;  3KAV A;  2PMR A;  4EZX A;  3PLT A;  4H8S A;  4KIK A;  4R5K A;  3B52 X;  2F7P A;  3T4A G;  1OA1 A;  2N3K A;  3RV0 A;  4EZN A;  3D2E A;  1TQU A;  4F00 A;  1GN9 A;  3LLL A;  5E84 A;  4IWQ A;  3OWG A;  1I4T A;  3EJR A;  4DYL A;  3T48 A;  4FZP A;  2RT6 A;  2RAJ A;  1DKY A;  3D52 A;  2EFK A;  3BVW A;  3QNJ A;  4EZS A;  1O7D C;  3BVU A;  3A98 A;  3BVT A;  1QX1 A;  3DX2 A;  4EZR A;  1ZWW A;  2PY6 A;  2EX3 B;  3FD9 A;  3BVX A;  3CV5 A;  4D8J A;  4H6H A;  4AZI A;  4FZS A;  4IM3 A;  4WPE A;  2V0O A;  3VKH A;  2Z0N A;  2Z0O A;  1SU7 A;  3CZS A;  4AZC B;  4EZZ A;  1E2U A;  2F1B A;  1E1D A;  1X04 A;  4UDX X;  2QXL A;  2ZXQ A;  3I2W A;  4BNE A;  2ND1 A;  4H6I A;  3ACO A;  3D50 A;  3T46 A;  2OBM A;  2RAI A;  4UDY X;  2X3X A;  2F7R A;  3BUD A;  3BUI A;  4R5G A;  2F7O A;  4HYB A;  3DDF A;  2YIV X;  2Q13 A;  4EZY A;  4IWP A;  4KIK B;  3O3O B;  1HWW A;  2Q12 A;  4B9Q A;  2YIB A;  1I4L A;  2OZN B;  1DKX A;  5KBP A;  3SYV A;  4EZT A;  2FIC A;  1JQK A;  2O0I 1;  3D4Z A;  2D1L A;  3QWE A;  4IM2 A;  4AVM A;  3D4Y A;  4JNE A;  3HAH A;  3D51 A;  3DX4 A;  2ELB A;  2NCZ A;  4I1Q A;  1SUF A;  3CKD A;  3BUB A;  4EZW A;  3I39 X;  2OO2 A;  1HXK A;  5FLE X;  2ND0 A;  1SU6 A;  1UPX A;  2OW6 A;  2YKT A;  4JWD A;  3BUP A;  1X03 A;  3EJS A;  1YWM A;  3HAI A;  4AZ5 A;  3D2F A;  3OK8 A;  4IM0 A;  1URU A;  4AZB A;  1DKZ A;  1R33 A;  1GNT A;  2F18 A;  2GF4 A;  4EZP A;  3QE6 A;  1QWN A;  3DX0 A;  1TQW A;  3L3O M;  4FM3 A;  2EWF A;  4E81 A;  4R5J A;  3DX1 A;  4AKV A;  4DCN C;  3Q84 A;  2YL6 A;  1WDZ A;  3KDR A;  3O3N B;  3DDG A;  2RAK A;  4ATM A;  4AZ7 A;  4NPH A;  2F1A A;  3C7N A;  5FIG A;  3F7W A;  3BUQ A;  1ZYL A;  3BVV A;  1TQV A;  4R5I A;  3DPQ A;  1U00 A;  3O3M B;  2QKW A;  3ERC C;  3I04 A;  3HAJ A;  3ZED A;  3B53 X;  1TQS A;  5C5B B;  3DPO A;  1R5E A;  2YL9 A;  3T47 A;  2EFL A;  4HY9 A;  4AZH A;  4PO2 A;  3RV1 A;  4IWO A;  3I01 A;  2YI8 A;  4G6Q A;  3ER8 C;  3B51 X;  3CAZ A;  2F7Q A;  3DYT A;  5C5B A;  4NSW A;  2YLA A;  2KHO A;  3KAW A;  1HTY A;  3VEA A;  4JWE A;  2X5C A;  2ALW A;  4IW0 A;  1I4D A;  3LVT A;  3QNI A;  1GNL A;  2QFF A;  4JL9 A;  4EZO A;  5TKY A;  3EJP A;  4AZ6 A;  4JN4 A;  3SOG A;  2YLL A;  3CZN A;  3QA8 A;  3EJT A;  2OBL A;  3OHX M; 
#chains in the Genus database with same CATH homology
 3Q84 A;  2X3W A;  3G9G A;  3HAJ A;  3SYV A;  2FIC A;  1I4D A;  1WDZ A;  3HAI A;  3QNI A;  3LLL A;  2C08 A;  2Q13 A;  2D1L A;  2RAK A;  3QWE A;  4ATM A;  4DCN C;  3OK8 A;  5C5B B;  4AVM A;  2Z0V A;  1I4T A;  1URU A;  4DYL A;  1ZWW A;  3SOG A;  1X04 A;  2X3V A;  2RAJ A;  3M3W A;  2EFK A;  1I49 A;  3QE6 A;  1Y2O A;  3HAH A;  3I2W A;  2Q12 A;  3CAZ A;  2YKT A;  4WPC A;  4BNE A;  3DYT A;  3PLT A;  1I4L A;  4H8S A;  2ELB A;  3ABH A;  3ACO A;  5C5B A;  4NSW A;  4FZS A;  2EFL A;  2D4C A;  4WPE A;  4I1Q A;  2RAI A;  2V0O A;  4NQI A;  1X03 A;  2Z0N A;  3Q0K A;  4AKV A;  2X3X A;  2Z0O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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