4AZLA

In meso structure of alginate transporter, alge, from pseudomoas aeruginosa, pao1, crystal form 2.
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
451
structure length
418
Chain Sequence
b'KNFGLDVKITGESENDRDLGTAPTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGETYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
total genus 126
structure length 418
sequence length 451
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4azlA00
4AFKA 3RBHA 5D5DA 4B61A 5IYUA 4AZLA 4XNKA 4XNLA
chains in the Genus database with same CATH superfamily
1GFMA 2ODJA 2Y7SA 1HXUA 3NSGA 3LK42 1OSMA 3POUA 3SZDA 2WJRA 4FSOA 5G26A 3AA1A 4GCQA 1H6S1 1HXXA 4AZLA 4QQ1A 4E1SA 4F4BA 3JTYA 2YNKA 2W80C 4JFBA 4O3ZA 1MM5A 3T20A 5G38A 2IWVA 2XMXA 4GCSA 4B61A 2ERVA 4UB8O 4KRAA 5H2FO 4FOZA 3PQSA 4KR8A 2F1CX 3BS0A 6PRNA 1BXWA 3VE2A 2F1VA 2W81C 4LSIA 2WJQA 4PJ0O 1BH3A 3PF1A 4RL9A 4C4VB 4XNKA 5G39A 2M07A 3AAAA 3JCUO 3PGSA 4C00A 2XE3A 4PUXA 2WVPA 1PHOA 3A0HO 3AA6B 2JMMA 2XG6A 3LK3B 4FZMA 1HXTA 4PR7A 5EE2A 8PRNA 1QJPA 3G7GA 3SYBA 4C69X 5DL6A 3LK2A 3VE1A 3A2SX 4RJXA 5DL7A 4D64A 2X27X 4FMSA 1MM4A 4FZLA 4AYEC 4LSFA 2MHLA 1GFOA 5B66O 4N59A 1QJ8A 2R4LA 5D5DA 3AAEA 4AUIA 4AYID 1P4TA 4O3WA 2ZLDA 2K4TA 5ADXK 3POXA 1MPFA 1ZHYA 2R89A 3AA1B 2FGQX 3DWOX 1S5LO 3SY7A 2J1NA 3SY9A 3VZUX 4CTDA 1GFPA 2R4PA 3UAQA 4FQEA 5T5FA 5AFUK 2XE5A 4LSHA 4XNLA 4AKRA 3O0EA 5ADXL 3PORA 4FRXA 1OPFA 2KC0A 2M06A 3DWNA 2FGRA 4O3XB 4FZNA 3KZIO 4G75A 2XE1A 5G3AA 4AFKA 3WI5A 5DL5A 4BUMX 4KR4A 3BRYA 1G90A 3NJTA 3POQA 2GE4A 4JCHA 2JQYA 1Q9GA 3PRNA 2R88A 4N74A 1ZHTA 2O4VA 4RLBA 2LHFA 1ZHWA 1BT9A 4O4UA 2KXPA 1YS5A 3V8UA 1T16A 4C4VA 3VZWX 2KZ7B 3HWBA 3AA7B 3LK41 2XTQA 3AA0A 2MNHA 3C5OA 2N2LA 3TZGA 1IZNB 5GTHO 1T1LA 3EMNX 4AYNA 4E1TA 3DA3A 2R4OA 2R8AA 4K3BA 3LK3A 5KAFO 3UU2A 3PQUA 3PGUA 3SZVA 3BRZA 5KAIO 3VZTX 2IWWA 2KDYA 3PGRA 3VY9X 2K0LA 1GFQA 3QRCA 5PRNA 3AAEB 1THQA 5GV0A 3FYXA 4AYDC 4D5UA 2OMFA 3GP6A 4FSPA 4GCPA 3VY8X 4O49A 3DA4A 1ZHXA 2R4NA 4K3CA 4RJWA 1E54A 5E79O 3WU2O 4AYMC 3K19A 4N75A 4UB6O 5AFUL 4RLCA 4N58A 3UPGA 2ZFGA 4FRTA 4AKRB 4U9CA 4FT6A 2X9KA 3AAAB 3KVDD 3HOEA 3DZMA 4GHBA 1PRNA 4LSEA 3HOLA 2F1TA 4FUVA 4IL6O 1Q9FA 3HW9A 4O3YA 5IYUA 2YPVA 2KXPB 3AA6A 2Y0HA 4Z3TA 3LK2B 3RBHA 2J4UP 5B5EO 4G76A 5DL8A 3T0SA 3AA0B 2N2MA 4D65A 2AXTO 5JDPA 1ORMA 2QTKA 2LFUA 2KZ7A 5GTIO 3QRAA 3AA7A 4GF4A 2Y0KA 7PRNA 2XTRA 1ZHZA 4O4XA 2Y0LA 1IZNA 5FVNA 2PRNA 2XE2A 5TISO 2PORA 3A0BO 3T24A 3WI4A 1QJ9A 4AKMA 1GFNA 3SYSA 2Y2XA 4FESA
chains in the Genus database with same CATH topology
1GFMA 2ODJA 2Y7SA 1HXUA 3NSGA 3LK42 1OSMA 3POUA 3SZDA 4FSOA 5G26A 3AA1A 4GCQA 1H6S1 1HXXA 4AZLA 4QQ1A 4E1SA 4F4BA 3JTYA 2YNKA 2W80C 4JFBA 4O3ZA 1MM5A 3T20A 4GCSA 2XMXA 4B61A 2ERVA 4KRAA 4FOZA 3PQSA 4KR8A 6PRNA 1BXWA 3VE2A 2F1VA 2W81C 4LSIA 4RL9A 1BH3A 4XNKA 2M07A 3AAAA 2XE3A 4PUXA 1PHOA 3AA6B 3LK3B 2JMMA 2XG6A 4FZMA 1HXTA 5EE2A 8PRNA 1QJPA 3G7GA 3SYBA 4C69X 5DL6A 3LK2A 3VE1A 3A2SX 4RJXA 5DL7A 4D64A 2X27X 4FMSA 1MM4A 4FZLA 4AYEC 4LSFA 2MHLA 1GFOA 4N59A 1QJ8A 5D5DA 3AAEA 4AUIA 4AYID 1P4TA 4O3WA 2ZLDA 2K4TA 5ADXK 3POXA 1MPFA 1ZHYA 3AA1B 2FGQX 3SY7A 3VZUX 3SY9A 2J1NA 1GFPA 3UAQA 5T5FA 5AFUK 5ADXL 2XE5A 4LSHA 4XNLA 4AKRA 3O0EA 3PORA 4FRXA 1OPFA 2KC0A 2M06A 4O3XB 2FGRA 4AFKA 4FZNA 4BUMX 4G75A 2XE1A 1G90A 3WI5A 5DL5A 4KR4A 3POQA 2GE4A 4JCHA 1Q9GA 3PRNA 1ZHTA 2O4VA 4RLBA 2LHFA 1ZHWA 1BT9A 4O4UA 2KXPA 1YS5A 3V8UA 3VZWX 2KZ7B 3HWBA 3AA7B 3LK41 2XTQA 3AA0A 2MNHA 3C5OA 2N2LA 3TZGA 1IZNB 3EMNX 4AYNA 4E1TA 3DA3A 3UU2A 3LK3A 3PQUA 3SZVA 3VZTX 2KDYA 3VY9X 2K0LA 1GFQA 3QRCA 5PRNA 3AAEB 1THQA 5GV0A 3FYXA 4AYDC 4D5UA 2OMFA 3GP6A 4FSPA 4GCPA 3VY8X 4O49A 3DA4A 1ZHXA 4RJWA 4AYMC 1E54A 3K19A 3UPGA 5AFUL 4RLCA 4N58A 2ZFGA 4FRTA 4AKRB 4U9CA 4FT6A 3AAAB 3KVDD 3HOEA 4GHBA 1PRNA 4LSEA 3HOLA 2F1TA 4FUVA 1Q9FA 3HW9A 4O3YA 2YPVA 2KXPB 3AA6A 2Y0HA 4Z3TA 3LK2B 3RBHA 2J4UP 4G76A 5DL8A 3T0SA 3AA0B 2N2MA 4D65A 5JDPA 1ORMA 2QTKA 2LFUA 2KZ7A 3QRAA 3AA7A 4GF4A 2Y0KA 7PRNA 2XTRA 1ZHZA 4O4XA 2Y0LA 1IZNA 5FVNA 2PRNA 2XE2A 3T24A 2PORA 5IYUA 3WI4A 4AKMA 1QJ9A 1GFNA 3SYSA 2Y2XA 4FESA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AFK A;  3RBH A;  5D5D A;  4B61 A;  5IYU A;  4AZL A;  4XNK A;  4XNL A; 
#chains in the Genus database with same CATH topology
 1GFM A;  2ODJ A;  2Y7S A;  1HXU A;  3NSG A;  3LK4 2;  1OSM A;  3POU A;  3SZD A;  2WJR A;  4FSO A;  5G26 A;  3AA1 A;  4GCQ A;  1H6S 1;  1HXX A;  4AZL A;  4QQ1 A;  4E1S A;  4F4B A;  3JTY A;  2YNK A;  2W80 C;  4JFB A;  4O3Z A;  1MM5 A;  3T20 A;  5G38 A;  2IWV A;  2XMX A;  4GCS A;  4B61 A;  2ERV A;  4UB8 O;  4KRA A;  5H2F O;  4FOZ A;  3PQS A;  4KR8 A;  2F1C X;  3BS0 A;  6PRN A;  1BXW A;  3VE2 A;  2F1V A;  2W81 C;  4LSI A;  2WJQ A;  4PJ0 O;  1BH3 A;  3PF1 A;  4RL9 A;  4C4V B;  4XNK A;  5G39 A;  2M07 A;  3AAA A;  3JCU O;  3PGS A;  4C00 A;  2XE3 A;  4PUX A;  2WVP A;  1PHO A;  3A0H O;  3AA6 B;  2JMM A;  2XG6 A;  3LK3 B;  4FZM A;  1HXT A;  4PR7 A;  5EE2 A;  8PRN A;  1QJP A;  3G7G A;  3SYB A;  4C69 X;  5DL6 A;  3LK2 A;  3VE1 A;  3A2S X;  4RJX A;  5DL7 A;  4D64 A;  2X27 X;  4FMS A;  1MM4 A;  4FZL A;  4AYE C;  4LSF A;  2MHL A;  1GFO A;  5B66 O;  4N59 A;  1QJ8 A;  2R4L A;  5D5D A;  3AAE A;  4AUI A;  4AYI D;  1P4T A;  4O3W A;  2ZLD A;  2K4T A;  5ADX K;  3POX A;  1MPF A;  1ZHY A;  2R89 A;  3AA1 B;  2FGQ X;  3DWO X;  1S5L O;  3SY7 A;  2J1N A;  3SY9 A;  3VZU X;  4CTD A;  1GFP A;  2R4P A;  3UAQ A;  4FQE A;  5T5F A;  5AFU K;  2XE5 A;  4LSH A;  4XNL A;  4AKR A;  3O0E A;  5ADX L;  3POR A;  4FRX A;  1OPF A;  2KC0 A;  2M06 A;  3DWN A;  2FGR A;  4O3X B;  4FZN A;  3KZI O;  4G75 A;  2XE1 A;  5G3A A;  4AFK A;  3WI5 A;  5DL5 A;  4BUM X;  4KR4 A;  3BRY A;  1G90 A;  3NJT A;  3POQ A;  2GE4 A;  4JCH A;  2JQY A;  1Q9G A;  3PRN A;  2R88 A;  4N74 A;  1ZHT A;  2O4V A;  4RLB A;  2LHF A;  1ZHW A;  1BT9 A;  4O4U A;  2KXP A;  1YS5 A;  3V8U A;  1T16 A;  4C4V A;  3VZW X;  2KZ7 B;  3HWB A;  3AA7 B;  3LK4 1;  2XTQ A;  3AA0 A;  2MNH A;  3C5O A;  2N2L A;  3TZG A;  1IZN B;  5GTH O;  1T1L A;  3EMN X;  4AYN A;  4E1T A;  3DA3 A;  2R4O A;  2R8A A;  4K3B A;  3LK3 A;  5KAF O;  3UU2 A;  3PQU A;  3PGU A;  3SZV A;  3BRZ A;  5KAI O;  3VZT X;  2IWW A;  2KDY A;  3PGR A;  3VY9 X;  2K0L A;  1GFQ A;  3QRC A;  5PRN A;  3AAE B;  1THQ A;  5GV0 A;  3FYX A;  4AYD C;  4D5U A;  2OMF A;  3GP6 A;  4FSP A;  4GCP A;  3VY8 X;  4O49 A;  3DA4 A;  1ZHX A;  2R4N A;  4K3C A;  4RJW A;  1E54 A;  5E79 O;  3WU2 O;  4AYM C;  3K19 A;  4N75 A;  4UB6 O;  5AFU L;  4RLC A;  4N58 A;  3UPG A;  2ZFG A;  4FRT A;  4AKR B;  4U9C A;  4FT6 A;  2X9K A;  3AAA B;  3KVD D;  3HOE A;  3DZM A;  4GHB A;  1PRN A;  4LSE A;  3HOL A;  2F1T A;  4FUV A;  4IL6 O;  1Q9F A;  3HW9 A;  4O3Y A;  5IYU A;  2YPV A;  2KXP B;  3AA6 A;  2Y0H A;  4Z3T A;  3LK2 B;  3RBH A;  2J4U P;  5B5E O;  4G76 A;  5DL8 A;  3T0S A;  3AA0 B;  2N2M A;  4D65 A;  2AXT O;  5JDP A;  1ORM A;  2QTK A;  2LFU A;  2KZ7 A;  5GTI O;  3QRA A;  3AA7 A;  4GF4 A;  2Y0K A;  7PRN A;  2XTR A;  1ZHZ A;  4O4X A;  2Y0L A;  1IZN A;  5FVN A;  2PRN A;  2XE2 A;  5TIS O;  2POR A;  3A0B O;  3T24 A;  3WI4 A;  1QJ9 A;  4AKM A;  1GFN A;  3SYS A;  2Y2X A;  4FES A; 
#chains in the Genus database with same CATH homology
 1GFM A;  2ODJ A;  2Y7S A;  1HXU A;  3NSG A;  3LK4 2;  1OSM A;  3POU A;  3SZD A;  4FSO A;  5G26 A;  3AA1 A;  4GCQ A;  1H6S 1;  1HXX A;  4AZL A;  4QQ1 A;  4E1S A;  4F4B A;  3JTY A;  2YNK A;  2W80 C;  4JFB A;  4O3Z A;  1MM5 A;  3T20 A;  4GCS A;  2XMX A;  4B61 A;  2ERV A;  4KRA A;  4FOZ A;  3PQS A;  4KR8 A;  6PRN A;  1BXW A;  3VE2 A;  2F1V A;  2W81 C;  4LSI A;  4RL9 A;  1BH3 A;  4XNK A;  2M07 A;  3AAA A;  2XE3 A;  4PUX A;  1PHO A;  3AA6 B;  3LK3 B;  2JMM A;  2XG6 A;  4FZM A;  1HXT A;  5EE2 A;  8PRN A;  1QJP A;  3G7G A;  3SYB A;  4C69 X;  5DL6 A;  3LK2 A;  3VE1 A;  3A2S X;  4RJX A;  5DL7 A;  4D64 A;  2X27 X;  4FMS A;  1MM4 A;  4FZL A;  4AYE C;  4LSF A;  2MHL A;  1GFO A;  4N59 A;  1QJ8 A;  5D5D A;  3AAE A;  4AUI A;  4AYI D;  1P4T A;  4O3W A;  2ZLD A;  2K4T A;  5ADX K;  3POX A;  1MPF A;  1ZHY A;  3AA1 B;  2FGQ X;  3SY7 A;  3VZU X;  3SY9 A;  2J1N A;  1GFP A;  3UAQ A;  5T5F A;  5AFU K;  5ADX L;  2XE5 A;  4LSH A;  4XNL A;  4AKR A;  3O0E A;  3POR A;  4FRX A;  1OPF A;  2KC0 A;  2M06 A;  4O3X B;  2FGR A;  4AFK A;  4FZN A;  4BUM X;  4G75 A;  2XE1 A;  1G90 A;  3WI5 A;  5DL5 A;  4KR4 A;  3POQ A;  2GE4 A;  4JCH A;  1Q9G A;  3PRN A;  1ZHT A;  2O4V A;  4RLB A;  2LHF A;  1ZHW A;  1BT9 A;  4O4U A;  2KXP A;  1YS5 A;  3V8U A;  3VZW X;  2KZ7 B;  3HWB A;  3AA7 B;  3LK4 1;  2XTQ A;  3AA0 A;  2MNH A;  3C5O A;  2N2L A;  3TZG A;  1IZN B;  3EMN X;  4AYN A;  4E1T A;  3DA3 A;  3UU2 A;  3LK3 A;  3PQU A;  3SZV A;  3VZT X;  2KDY A;  3VY9 X;  2K0L A;  1GFQ A;  3QRC A;  5PRN A;  3AAE B;  1THQ A;  5GV0 A;  3FYX A;  4AYD C;  4D5U A;  2OMF A;  3GP6 A;  4FSP A;  4GCP A;  3VY8 X;  4O49 A;  3DA4 A;  1ZHX A;  4RJW A;  4AYM C;  1E54 A;  3K19 A;  3UPG A;  5AFU L;  4RLC A;  4N58 A;  2ZFG A;  4FRT A;  4AKR B;  4U9C A;  4FT6 A;  3AAA B;  3KVD D;  3HOE A;  4GHB A;  1PRN A;  4LSE A;  3HOL A;  2F1T A;  4FUV A;  1Q9F A;  3HW9 A;  4O3Y A;  2YPV A;  2KXP B;  3AA6 A;  2Y0H A;  4Z3T A;  3LK2 B;  3RBH A;  2J4U P;  4G76 A;  5DL8 A;  3T0S A;  3AA0 B;  2N2M A;  4D65 A;  5JDP A;  1ORM A;  2QTK A;  2LFU A;  2KZ7 A;  3QRA A;  3AA7 A;  4GF4 A;  2Y0K A;  7PRN A;  2XTR A;  1ZHZ A;  4O4X A;  2Y0L A;  1IZN A;  5FVN A;  2PRN A;  2XE2 A;  3T24 A;  2POR A;  5IYU A;  3WI4 A;  4AKM A;  1QJ9 A;  1GFN A;  3SYS A;  2Y2X A;  4FES A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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