4AZLA

In meso structure of alginate transporter, alge, from pseudomoas aeruginosa, pao1, crystal form 2.
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
451
structure length
418
Chain Sequence
KNFGLDVKITGESENDRDLGTAPTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGETYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
total genus 126
structure length 418
sequence length 451
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4azlA00
5D5DA 5IYUA 4B61A 3RBHA 4XNLA 4XNKA 4AZLA 4AFKA
chains in the Genus database with same CATH superfamily
1GFPA 1E54A 2R4OA 4AKMA 5H2FO 2KC0A 3T0SA 2W81C 3VE2A 2MNHA 2Y0KA 1OSMA 3AA0B 3LK41 3VY8X 1ORMA 1GFMA 4FSPA 1Q9FA 3AA6B 4FRTA 7PRNA 3PF1A 2MHLA 1GFNA 4O3YA 4AKRB 2JQYA 3NSGA 2X9KA 3A2SX 4FESA 3UU2A 2XE3A 2R4LA 3LK3A 1PHOA 4N58A 3SY9A 3AAEA 2WJRA 2XG6A 2AXTO 3PGSA 5B66O 3AAAA 3JCUO 4KR8A 2IWVA 4N75A 1ZHXA 2XTRA 3VZTX 4AYID 1HXUA 4K3CA 4U9CA 2F1CX 4FOZA 5G26A 1QJPA 2KXPA 5KAIO 2XE2A 2Y0HA 3QRAA 3SYSA 1ZHWA 5FVNA 4AKRA 2R89A 3SY7A 4LSHA 2M06A 4O4UA 5IYUA 3UPGA 2Y0LA 3C5OA 4AYDC 2Y2XA 3DZMA 1THQA 4KRAA 3AAEB 4E1SA 5AFUK 4RJXA 2R4NA 1ZHYA 5B5EO 2ERVA 3POXA 3AA6A 4G75A 1BT9A 2XE5A 1MM5A 3HOEA 2N2LA 1ZHZA 4O3XB 5EE2A 4Z3TA 4O49A 2KXPB 1T16A 3PRNA 4GCSA 2R8AA 4C69X 4D64A 5GV0A 2XTQA 4FQEA 1HXTA 2YNKA 4FZNA 5ADXK 2XE1A 3EMNX 1Q9GA 3AAAB 3DWNA 3JTYA 3V8UA 4GCPA 2JMMA 2W80C 3LK2A 2ODJA 3LK42 4G76A 3WI5A 1MM4A 4KR4A 5JDPA 5DL8A 3HOLA 5KAFO 3TZGA 2R4PA 4UB6O 2OMFA 4D5UA 2IWWA 4JFBA 4FSOA 3VE1A 2R88A 4AFKA 3GP6A 2K0LA 3A0HO 2O4VA 1T1LA 4IL6O 4XNLA 2N2MA 4N59A 4GHBA 4AYNA 1IZNA 5DL6A 4RJWA 3VZWX 4RLCA 1G90A 2F1VA 2LHFA 3AA1A 3PORA 5AFUL 4JCHA 4LSFA 2FGQX 3DA3A 4FZMA 4PJ0O 3T24A 2WVPA 2X27X 3SZVA 4D65A 1MPFA 3HWBA 1S5LO 3KVDD 3WI4A 4B61A 3PQSA 2XMXA 3RBHA 4PR7A 3LK2B 3KZIO 4LSIA 3O0EA 4XNKA 3T20A 2KZ7A 5TISO 3BS0A 4C4VB 1PRNA 3PGRA 2GE4A 3A0BO 4F4BA 2ZLDA 4AUIA 3POUA 3POQA 5GTIO 1BH3A 4CTDA 1ZHTA 8PRNA 2QTKA 1IZNB 4GF4A 5DL7A 5G38A 1GFQA 1H6S1 5DL5A 3K19A 4FUVA 2PRNA 2Y7SA 4FT6A 4O4XA 4AYMC 4LSEA 3SYBA 3VZUX 1HXXA 1QJ9A 2F1TA 2KDYA 1YS5A 3WU2O 3PQUA 4RLBA 2PORA 4E1TA 5PRNA 3NJTA 1OPFA 4O3WA 2WJQA 3AA0A 3BRZA 3FYXA 5G39A 5G3AA 4AZLA 1P4TA 2J1NA 2ZFGA 3AA1B 3AA7B 4FZLA 4C00A 6PRNA 5GTHO 3DA4A 3SZDA 4PUXA 5T5FA 2K4TA 2M07A 4FRXA 4K3BA 1BXWA 4FMSA 4UB8O 5D5DA 3HW9A 2LFUA 3G7GA 4AYEC 3DWOX 5ADXL 2KZ7B 3VY9X 4C4VA 2FGRA 2YPVA 4RL9A 5E79O 3UAQA 4QQ1A 4O3ZA 1GFOA 3BRYA 2J4UP 3AA7A 3LK3B 3PGUA 3QRCA 4GCQA 4BUMX 1QJ8A 4N74A
chains in the Genus database with same CATH topology
1GFPA 1E54A 4AKMA 2KC0A 3T0SA 2W81C 3VE2A 2MNHA 2Y0KA 1OSMA 3AA0B 3LK41 3VY8X 1ORMA 1GFMA 4FSPA 1Q9FA 3AA6B 4FRTA 7PRNA 2MHLA 1GFNA 4O3YA 4AKRB 3NSGA 3UU2A 3A2SX 4FESA 2XE3A 3LK3A 3SY9A 1PHOA 4N58A 3AAEA 2XG6A 3AAAA 4KR8A 1ZHXA 2XTRA 3VZTX 4AYID 1HXUA 4U9CA 4FOZA 5G26A 1QJPA 2KXPA 2XE2A 2Y0HA 3QRAA 3SYSA 1ZHWA 5FVNA 4AKRA 3SY7A 4LSHA 2M06A 4O4UA 5IYUA 3UPGA 2Y0LA 3C5OA 4AYDC 2Y2XA 1THQA 4KRAA 3AAEB 4E1SA 5AFUK 4RJXA 1ZHYA 2ERVA 3POXA 3AA6A 4G75A 1BT9A 2XE5A 1MM5A 3HOEA 2N2LA 1ZHZA 4O3XB 5EE2A 4Z3TA 4O49A 2KXPB 3PRNA 4D64A 4GCSA 4C69X 5GV0A 2XTQA 1HXTA 2YNKA 4FZNA 5ADXK 2XE1A 3EMNX 1Q9GA 3AAAB 3JTYA 3V8UA 4GCPA 2JMMA 2W80C 3LK2A 2ODJA 3LK42 4G76A 3WI5A 1MM4A 4KR4A 5JDPA 5DL8A 3HOLA 3TZGA 4D5UA 2OMFA 4JFBA 4FSOA 3VE1A 4AFKA 3GP6A 2K0LA 2O4VA 4XNLA 2N2MA 4N59A 4GHBA 4AYNA 1IZNA 5DL6A 4RJWA 3VZWX 4RLCA 1G90A 2F1VA 2LHFA 3AA1A 3PORA 5AFUL 4JCHA 4LSFA 2FGQX 3DA3A 4FZMA 3T24A 2X27X 4D65A 1MPFA 3HWBA 3KVDD 3WI4A 4B61A 3PQSA 2XMXA 3RBHA 3LK2B 4LSIA 3O0EA 4XNKA 3T20A 2KZ7A 1PRNA 2GE4A 4F4BA 2ZLDA 4AUIA 3POUA 3POQA 8PRNA 1BH3A 1ZHTA 2QTKA 1IZNB 4GF4A 5DL7A 1GFQA 1H6S1 5DL5A 3K19A 4FUVA 2Y7SA 2PRNA 4FT6A 4O4XA 4AYMC 4LSEA 3SYBA 3VZUX 1HXXA 1QJ9A 2F1TA 2KDYA 1YS5A 3PQUA 4RLBA 2PORA 4E1TA 5PRNA 1OPFA 4O3WA 4AZLA 3AA0A 3FYXA 1P4TA 2J1NA 2ZFGA 3AA1B 3AA7B 4FZLA 6PRNA 3DA4A 3SZDA 4PUXA 5T5FA 2K4TA 2M07A 4FRXA 5D5DA 1BXWA 4FMSA 3HW9A 2LFUA 3G7GA 4AYEC 5ADXL 2KZ7B 3VY9X 2FGRA 2YPVA 4RL9A 3UAQA 4QQ1A 4O3ZA 1GFOA 2J4UP 3AA7A 3LK3B 3QRCA 4GCQA 4BUMX 1QJ8A 3SZVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D5D A;  5IYU A;  4B61 A;  3RBH A;  4XNL A;  4XNK A;  4AZL A;  4AFK A; 
#chains in the Genus database with same CATH topology
 1GFP A;  1E54 A;  2R4O A;  4AKM A;  5H2F O;  2KC0 A;  3T0S A;  2W81 C;  3VE2 A;  2MNH A;  2Y0K A;  1OSM A;  3AA0 B;  3LK4 1;  3VY8 X;  1ORM A;  1GFM A;  4FSP A;  1Q9F A;  3AA6 B;  4FRT A;  7PRN A;  3PF1 A;  2MHL A;  1GFN A;  4O3Y A;  4AKR B;  2JQY A;  3NSG A;  2X9K A;  3A2S X;  4FES A;  3UU2 A;  2XE3 A;  2R4L A;  3LK3 A;  1PHO A;  4N58 A;  3SY9 A;  3AAE A;  2WJR A;  2XG6 A;  2AXT O;  3PGS A;  5B66 O;  3AAA A;  3JCU O;  4KR8 A;  2IWV A;  4N75 A;  1ZHX A;  2XTR A;  3VZT X;  4AYI D;  1HXU A;  4K3C A;  4U9C A;  2F1C X;  4FOZ A;  5G26 A;  1QJP A;  2KXP A;  5KAI O;  2XE2 A;  2Y0H A;  3QRA A;  3SYS A;  1ZHW A;  5FVN A;  4AKR A;  2R89 A;  3SY7 A;  4LSH A;  2M06 A;  4O4U A;  5IYU A;  3UPG A;  2Y0L A;  3C5O A;  4AYD C;  2Y2X A;  3DZM A;  1THQ A;  4KRA A;  3AAE B;  4E1S A;  5AFU K;  4RJX A;  2R4N A;  1ZHY A;  5B5E O;  2ERV A;  3POX A;  3AA6 A;  4G75 A;  1BT9 A;  2XE5 A;  1MM5 A;  3HOE A;  2N2L A;  1ZHZ A;  4O3X B;  5EE2 A;  4Z3T A;  4O49 A;  2KXP B;  1T16 A;  3PRN A;  4GCS A;  2R8A A;  4C69 X;  4D64 A;  5GV0 A;  2XTQ A;  4FQE A;  1HXT A;  2YNK A;  4FZN A;  5ADX K;  2XE1 A;  3EMN X;  1Q9G A;  3AAA B;  3DWN A;  3JTY A;  3V8U A;  4GCP A;  2JMM A;  2W80 C;  3LK2 A;  2ODJ A;  3LK4 2;  4G76 A;  3WI5 A;  1MM4 A;  4KR4 A;  5JDP A;  5DL8 A;  3HOL A;  5KAF O;  3TZG A;  2R4P A;  4UB6 O;  2OMF A;  4D5U A;  2IWW A;  4JFB A;  4FSO A;  3VE1 A;  2R88 A;  4AFK A;  3GP6 A;  2K0L A;  3A0H O;  2O4V A;  1T1L A;  4IL6 O;  4XNL A;  2N2M A;  4N59 A;  4GHB A;  4AYN A;  1IZN A;  5DL6 A;  4RJW A;  3VZW X;  4RLC A;  1G90 A;  2F1V A;  2LHF A;  3AA1 A;  3POR A;  5AFU L;  4JCH A;  4LSF A;  2FGQ X;  3DA3 A;  4FZM A;  4PJ0 O;  3T24 A;  2WVP A;  2X27 X;  3SZV A;  4D65 A;  1MPF A;  3HWB A;  1S5L O;  3KVD D;  3WI4 A;  4B61 A;  3PQS A;  2XMX A;  3RBH A;  4PR7 A;  3LK2 B;  3KZI O;  4LSI A;  3O0E A;  4XNK A;  3T20 A;  2KZ7 A;  5TIS O;  3BS0 A;  4C4V B;  1PRN A;  3PGR A;  2GE4 A;  3A0B O;  4F4B A;  2ZLD A;  4AUI A;  3POU A;  3POQ A;  5GTI O;  1BH3 A;  4CTD A;  1ZHT A;  8PRN A;  2QTK A;  1IZN B;  4GF4 A;  5DL7 A;  5G38 A;  1GFQ A;  1H6S 1;  5DL5 A;  3K19 A;  4FUV A;  2PRN A;  2Y7S A;  4FT6 A;  4O4X A;  4AYM C;  4LSE A;  3SYB A;  3VZU X;  1HXX A;  1QJ9 A;  2F1T A;  2KDY A;  1YS5 A;  3WU2 O;  3PQU A;  4RLB A;  2POR A;  4E1T A;  5PRN A;  3NJT A;  1OPF A;  4O3W A;  2WJQ A;  3AA0 A;  3BRZ A;  3FYX A;  5G39 A;  5G3A A;  4AZL A;  1P4T A;  2J1N A;  2ZFG A;  3AA1 B;  3AA7 B;  4FZL A;  4C00 A;  6PRN A;  5GTH O;  3DA4 A;  3SZD A;  4PUX A;  5T5F A;  2K4T A;  2M07 A;  4FRX A;  4K3B A;  1BXW A;  4FMS A;  4UB8 O;  5D5D A;  3HW9 A;  2LFU A;  3G7G A;  4AYE C;  3DWO X;  5ADX L;  2KZ7 B;  3VY9 X;  4C4V A;  2FGR A;  2YPV A;  4RL9 A;  5E79 O;  3UAQ A;  4QQ1 A;  4O3Z A;  1GFO A;  3BRY A;  2J4U P;  3AA7 A;  3LK3 B;  3PGU A;  3QRC A;  4GCQ A;  4BUM X;  1QJ8 A;  4N74 A; 
#chains in the Genus database with same CATH homology
 1GFP A;  1E54 A;  4AKM A;  2KC0 A;  3T0S A;  2W81 C;  3VE2 A;  2MNH A;  2Y0K A;  1OSM A;  3AA0 B;  3LK4 1;  3VY8 X;  1ORM A;  1GFM A;  4FSP A;  1Q9F A;  3AA6 B;  4FRT A;  7PRN A;  2MHL A;  1GFN A;  4O3Y A;  4AKR B;  3NSG A;  3UU2 A;  3A2S X;  4FES A;  2XE3 A;  3LK3 A;  3SY9 A;  1PHO A;  4N58 A;  3AAE A;  2XG6 A;  3AAA A;  4KR8 A;  1ZHX A;  2XTR A;  3VZT X;  4AYI D;  1HXU A;  4U9C A;  4FOZ A;  5G26 A;  1QJP A;  2KXP A;  2XE2 A;  2Y0H A;  3QRA A;  3SYS A;  1ZHW A;  5FVN A;  4AKR A;  3SY7 A;  4LSH A;  2M06 A;  4O4U A;  5IYU A;  3UPG A;  2Y0L A;  3C5O A;  4AYD C;  2Y2X A;  1THQ A;  4KRA A;  3AAE B;  4E1S A;  5AFU K;  4RJX A;  1ZHY A;  2ERV A;  3POX A;  3AA6 A;  4G75 A;  1BT9 A;  2XE5 A;  1MM5 A;  3HOE A;  2N2L A;  1ZHZ A;  4O3X B;  5EE2 A;  4Z3T A;  4O49 A;  2KXP B;  3PRN A;  4D64 A;  4GCS A;  4C69 X;  5GV0 A;  2XTQ A;  1HXT A;  2YNK A;  4FZN A;  5ADX K;  2XE1 A;  3EMN X;  1Q9G A;  3AAA B;  3JTY A;  3V8U A;  4GCP A;  2JMM A;  2W80 C;  3LK2 A;  2ODJ A;  3LK4 2;  4G76 A;  3WI5 A;  1MM4 A;  4KR4 A;  5JDP A;  5DL8 A;  3HOL A;  3TZG A;  4D5U A;  2OMF A;  4JFB A;  4FSO A;  3VE1 A;  4AFK A;  3GP6 A;  2K0L A;  2O4V A;  4XNL A;  2N2M A;  4N59 A;  4GHB A;  4AYN A;  1IZN A;  5DL6 A;  4RJW A;  3VZW X;  4RLC A;  1G90 A;  2F1V A;  2LHF A;  3AA1 A;  3POR A;  5AFU L;  4JCH A;  4LSF A;  2FGQ X;  3DA3 A;  4FZM A;  3T24 A;  2X27 X;  4D65 A;  1MPF A;  3HWB A;  3KVD D;  3WI4 A;  4B61 A;  3PQS A;  2XMX A;  3RBH A;  3LK2 B;  4LSI A;  3O0E A;  4XNK A;  3T20 A;  2KZ7 A;  1PRN A;  2GE4 A;  4F4B A;  2ZLD A;  4AUI A;  3POU A;  3POQ A;  8PRN A;  1BH3 A;  1ZHT A;  2QTK A;  1IZN B;  4GF4 A;  5DL7 A;  1GFQ A;  1H6S 1;  5DL5 A;  3K19 A;  4FUV A;  2Y7S A;  2PRN A;  4FT6 A;  4O4X A;  4AYM C;  4LSE A;  3SYB A;  3VZU X;  1HXX A;  1QJ9 A;  2F1T A;  2KDY A;  1YS5 A;  3PQU A;  4RLB A;  2POR A;  4E1T A;  5PRN A;  1OPF A;  4O3W A;  4AZL A;  3AA0 A;  3FYX A;  1P4T A;  2J1N A;  2ZFG A;  3AA1 B;  3AA7 B;  4FZL A;  6PRN A;  3DA4 A;  3SZD A;  4PUX A;  5T5F A;  2K4T A;  2M07 A;  4FRX A;  5D5D A;  1BXW A;  4FMS A;  3HW9 A;  2LFU A;  3G7G A;  4AYE C;  5ADX L;  2KZ7 B;  3VY9 X;  2FGR A;  2YPV A;  4RL9 A;  3UAQ A;  4QQ1 A;  4O3Z A;  1GFO A;  2J4U P;  3AA7 A;  3LK3 B;  3QRC A;  4GCQ A;  4BUM X;  1QJ8 A;  3SZV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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