4AZLA

In meso structure of alginate transporter, alge, from pseudomoas aeruginosa, pao1, crystal form 2.
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
451
structure length
418
Chain Sequence
KNFGLDVKITGESENDRDLGTAPTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGETYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
total genus 126
structure length 418
sequence length 451
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4azlA00
5D5DA 4XNLA 4XNKA 5IYUA 4AFKA 3RBHA 4AZLA 4B61A
chains in the Genus database with same CATH superfamily
1IZNA 2N2MA 4FZNA 1BT9A 2W81C 2WJRA 4FSPA 2MHLA 4N74A 5GV0A 2LFUA 3SY9A 1OSMA 2JQYA 2OMFA 5DL6A 2R4NA 5DL5A 3SZVA 7PRNA 3AA1B 4LSIA 5B66O 3KVDD 4O49A 2F1VA 6PRNA 4K3BA 5G39A 3HOEA 3POXA 2K0LA 4GCQA 1HXXA 3A2SX 3POUA 3AA6A 1MM5A 4GCPA 4UB6O 4D5UA 2WJQA 4XNLA 1IZNB 4O3WA 2KXPB 4C69X 2O4VA 3KZIO 5IYUA 3JTYA 3BRYA 8PRNA 1THQA 3A0BO 5JDPA 2J4UP 3PF1A 5GTIO 4C4VB 4E1TA 2JMMA 4FOZA 1HXUA 4F4BA 1T16A 5T5FA 4IL6O 1MPFA 5DL7A 2XE3A 4FZMA 4AKRB 2W80C 4AZLA 4B61A 2XE1A 3UU2A 2QTKA 2R8AA 1ORMA 4CTDA 4LSEA 1GFMA 1OPFA 1PRNA 4D64A 2FGQX 4O4UA 1BXWA 1T1LA 3PQUA 3PQSA 1G90A 4O3ZA 1Q9FA 3LK2A 4K3CA 3PORA 5H2FO 5G3AA 4RL9A 4LSHA 4PJ0O 2M07A 4FRXA 4PR7A 1GFOA 2F1TA 2GE4A 3VZTX 4E1SA 4KR4A 4O4XA 3WU2O 1MM4A 1QJ8A 1P4TA 4AYID 2Y2XA 3DA4A 3V8UA 2KZ7B 1H6S1 3HOLA 3EMNX 3AA1A 2MNHA 3RBHA 5AFUL 5G38A 1GFQA 4GHBA 4N58A 1HXTA 3AAAA 5ADXK 2J1NA 2PORA 4FSOA 3DWOX 2R4LA 4LSFA 2YPVA 1YS5A 3C5OA 3AAAB 1ZHXA 3DWNA 3VY9X 4AYNA 4AKMA 1QJ9A 3LK3B 4FT6A 2K4TA 1ZHTA 2R88A 3PGSA 2XE2A 2N2LA 2ZFGA 5ADXL 1GFNA 2FGRA 4XNKA 5KAFO 3T20A 4UB8O 1S5LO 2R4PA 2X27X 2ZLDA 3AAEA 2ODJA 5FVNA 3SY7A 4G76A 3K19A 3UPGA 2XMXA 4RJXA 3SZDA 4AYDC 3PGUA 4G75A 5G26A 2R4OA 3AAEB 4AFKA 5EE2A 2IWWA 2M06A 3DA3A 3G7GA 3VZUX 3POQA 2Y0HA 2KC0A 4GF4A 4N75A 3LK3A 3AA6B 4FZLA 2F1CX 5D5DA 3SYSA 3BRZA 3T0SA 2KXPA 3QRAA 1GFPA 2R89A 3LK41 4QQ1A 1Q9GA 3AA0B 4AKRA 3VE2A 4RLBA 3NSGA 5GTHO 4KRAA 1PHOA 1ZHWA 3A0HO 3UAQA 2Y7SA 2Y0KA 3PGRA 2X9KA 2KZ7A 3GP6A 4U9CA 5KAIO 4N59A 1QJPA 3O0EA 3JCUO 3HW9A 4JFBA 5E79O 4RJWA 3HWBA 2IWVA 3QRCA 3T24A 3DZMA 3SYBA 3WI5A 2LHFA 4Z3TA 3WI4A 2XG6A 1ZHZA 4AYEC 2WVPA 3NJTA 3LK42 4FESA 3TZGA 3AA0A 4C4VA 4FQEA 3VZWX 2XTRA 2XTQA 2Y0LA 2KDYA 3AA7A 5DL8A 4PUXA 4AYMC 4C00A 2ERVA 5B5EO 2PRNA 4KR8A 4D65A 4JCHA 5PRNA 2XE5A 3AA7B 3BS0A 4GCSA 2AXTO 3VY8X 5AFUK 5TISO 4RLCA 1BH3A 3PRNA 4FMSA 4AUIA 1ZHYA 4FUVA 4BUMX 3LK2B 4O3XB 3VE1A 4O3YA 2YNKA 1E54A 3FYXA 4FRTA
chains in the Genus database with same CATH topology
1IZNA 2N2MA 4FZNA 1BT9A 2W81C 4FSPA 2MHLA 5GV0A 2LFUA 3SY9A 1OSMA 2OMFA 7PRNA 5DL6A 5DL5A 3SZVA 3AA1B 4LSIA 3KVDD 4O49A 2F1VA 6PRNA 3HOEA 3POXA 2K0LA 4GCQA 1HXXA 3A2SX 3POUA 3AA6A 1MM5A 4GCPA 4D5UA 4XNLA 1IZNB 4O3WA 2KXPB 4C69X 2O4VA 5IYUA 3JTYA 8PRNA 1THQA 2J4UP 5JDPA 4E1TA 2JMMA 4FOZA 1HXUA 4F4BA 5T5FA 1MPFA 5DL7A 2XE3A 4FZMA 4AKRB 2W80C 4AZLA 4B61A 2XE1A 3UU2A 2QTKA 1ORMA 4LSEA 1GFMA 1OPFA 1PRNA 4D64A 2FGQX 4O4UA 1BXWA 3PQUA 1G90A 3PQSA 4O3ZA 1Q9FA 3LK2A 3PORA 4RL9A 4LSHA 2M07A 4FRXA 1GFOA 2F1TA 2GE4A 3VZTX 4E1SA 4KR4A 4O4XA 1MM4A 1QJ8A 1P4TA 4AYID 2Y2XA 3DA4A 3V8UA 2KZ7B 1H6S1 3HOLA 3EMNX 3AA1A 2MNHA 3RBHA 5AFUL 1GFQA 4GHBA 4N58A 1HXTA 3AAAA 5ADXK 2J1NA 2PORA 4FSOA 4LSFA 2YPVA 1YS5A 3C5OA 3AAAB 1ZHXA 3VY9X 4AYNA 4AKMA 1QJ9A 3LK3B 4FT6A 2K4TA 1ZHTA 2XE2A 2N2LA 2ZFGA 5ADXL 1GFNA 2FGRA 4XNKA 3T20A 2ZLDA 2X27X 3AAEA 5FVNA 2ODJA 3SY7A 4G76A 3K19A 3UPGA 2XMXA 4RJXA 3SZDA 4AYDC 4G75A 5G26A 3AAEB 4AFKA 5EE2A 2M06A 3DA3A 3G7GA 3VZUX 3POQA 2Y0HA 2KC0A 4GF4A 3LK3A 3AA6B 4FZLA 5D5DA 3SYSA 3T0SA 2KXPA 3QRAA 1GFPA 3LK41 4D65A 4QQ1A 1Q9GA 3AA0B 4AKRA 3VE2A 4RLBA 3NSGA 4KRAA 1PHOA 1ZHWA 3UAQA 2Y7SA 2Y0KA 2KZ7A 3GP6A 4U9CA 4N59A 1QJPA 3O0EA 3HW9A 4JFBA 4RJWA 3HWBA 3QRCA 3T24A 3SYBA 3WI5A 2LHFA 4Z3TA 3WI4A 2XG6A 1ZHZA 4AYEC 3LK42 4FESA 3TZGA 3AA0A 3VZWX 2XTRA 2XTQA 2Y0LA 2KDYA 3AA7A 5DL8A 4PUXA 4AYMC 2ERVA 2PRNA 4KR8A 4JCHA 5PRNA 2XE5A 3AA7B 4GCSA 3VY8X 5AFUK 4RLCA 1BH3A 3PRNA 4FMSA 4AUIA 1ZHYA 4FUVA 4BUMX 3LK2B 4O3XB 3VE1A 4O3YA 2YNKA 1E54A 3FYXA 4FRTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D5D A;  4XNL A;  4XNK A;  5IYU A;  4AFK A;  3RBH A;  4AZL A;  4B61 A; 
#chains in the Genus database with same CATH topology
 1IZN A;  2N2M A;  4FZN A;  1BT9 A;  2W81 C;  2WJR A;  4FSP A;  2MHL A;  4N74 A;  5GV0 A;  2LFU A;  3SY9 A;  1OSM A;  2JQY A;  2OMF A;  5DL6 A;  2R4N A;  5DL5 A;  3SZV A;  7PRN A;  3AA1 B;  4LSI A;  5B66 O;  3KVD D;  4O49 A;  2F1V A;  6PRN A;  4K3B A;  5G39 A;  3HOE A;  3POX A;  2K0L A;  4GCQ A;  1HXX A;  3A2S X;  3POU A;  3AA6 A;  1MM5 A;  4GCP A;  4UB6 O;  4D5U A;  2WJQ A;  4XNL A;  1IZN B;  4O3W A;  2KXP B;  4C69 X;  2O4V A;  3KZI O;  5IYU A;  3JTY A;  3BRY A;  8PRN A;  1THQ A;  3A0B O;  5JDP A;  2J4U P;  3PF1 A;  5GTI O;  4C4V B;  4E1T A;  2JMM A;  4FOZ A;  1HXU A;  4F4B A;  1T16 A;  5T5F A;  4IL6 O;  1MPF A;  5DL7 A;  2XE3 A;  4FZM A;  4AKR B;  2W80 C;  4AZL A;  4B61 A;  2XE1 A;  3UU2 A;  2QTK A;  2R8A A;  1ORM A;  4CTD A;  4LSE A;  1GFM A;  1OPF A;  1PRN A;  4D64 A;  2FGQ X;  4O4U A;  1BXW A;  1T1L A;  3PQU A;  3PQS A;  1G90 A;  4O3Z A;  1Q9F A;  3LK2 A;  4K3C A;  3POR A;  5H2F O;  5G3A A;  4RL9 A;  4LSH A;  4PJ0 O;  2M07 A;  4FRX A;  4PR7 A;  1GFO A;  2F1T A;  2GE4 A;  3VZT X;  4E1S A;  4KR4 A;  4O4X A;  3WU2 O;  1MM4 A;  1QJ8 A;  1P4T A;  4AYI D;  2Y2X A;  3DA4 A;  3V8U A;  2KZ7 B;  1H6S 1;  3HOL A;  3EMN X;  3AA1 A;  2MNH A;  3RBH A;  5AFU L;  5G38 A;  1GFQ A;  4GHB A;  4N58 A;  1HXT A;  3AAA A;  5ADX K;  2J1N A;  2POR A;  4FSO A;  3DWO X;  2R4L A;  4LSF A;  2YPV A;  1YS5 A;  3C5O A;  3AAA B;  1ZHX A;  3DWN A;  3VY9 X;  4AYN A;  4AKM A;  1QJ9 A;  3LK3 B;  4FT6 A;  2K4T A;  1ZHT A;  2R88 A;  3PGS A;  2XE2 A;  2N2L A;  2ZFG A;  5ADX L;  1GFN A;  2FGR A;  4XNK A;  5KAF O;  3T20 A;  4UB8 O;  1S5L O;  2R4P A;  2X27 X;  2ZLD A;  3AAE A;  2ODJ A;  5FVN A;  3SY7 A;  4G76 A;  3K19 A;  3UPG A;  2XMX A;  4RJX A;  3SZD A;  4AYD C;  3PGU A;  4G75 A;  5G26 A;  2R4O A;  3AAE B;  4AFK A;  5EE2 A;  2IWW A;  2M06 A;  3DA3 A;  3G7G A;  3VZU X;  3POQ A;  2Y0H A;  2KC0 A;  4GF4 A;  4N75 A;  3LK3 A;  3AA6 B;  4FZL A;  2F1C X;  5D5D A;  3SYS A;  3BRZ A;  3T0S A;  2KXP A;  3QRA A;  1GFP A;  2R89 A;  3LK4 1;  4QQ1 A;  1Q9G A;  3AA0 B;  4AKR A;  3VE2 A;  4RLB A;  3NSG A;  5GTH O;  4KRA A;  1PHO A;  1ZHW A;  3A0H O;  3UAQ A;  2Y7S A;  2Y0K A;  3PGR A;  2X9K A;  2KZ7 A;  3GP6 A;  4U9C A;  5KAI O;  4N59 A;  1QJP A;  3O0E A;  3JCU O;  3HW9 A;  4JFB A;  5E79 O;  4RJW A;  3HWB A;  2IWV A;  3QRC A;  3T24 A;  3DZM A;  3SYB A;  3WI5 A;  2LHF A;  4Z3T A;  3WI4 A;  2XG6 A;  1ZHZ A;  4AYE C;  2WVP A;  3NJT A;  3LK4 2;  4FES A;  3TZG A;  3AA0 A;  4C4V A;  4FQE A;  3VZW X;  2XTR A;  2XTQ A;  2Y0L A;  2KDY A;  3AA7 A;  5DL8 A;  4PUX A;  4AYM C;  4C00 A;  2ERV A;  5B5E O;  2PRN A;  4KR8 A;  4D65 A;  4JCH A;  5PRN A;  2XE5 A;  3AA7 B;  3BS0 A;  4GCS A;  2AXT O;  3VY8 X;  5AFU K;  5TIS O;  4RLC A;  1BH3 A;  3PRN A;  4FMS A;  4AUI A;  1ZHY A;  4FUV A;  4BUM X;  3LK2 B;  4O3X B;  3VE1 A;  4O3Y A;  2YNK A;  1E54 A;  3FYX A;  4FRT A; 
#chains in the Genus database with same CATH homology
 1IZN A;  2N2M A;  4FZN A;  1BT9 A;  2W81 C;  4FSP A;  2MHL A;  5GV0 A;  2LFU A;  3SY9 A;  1OSM A;  2OMF A;  7PRN A;  5DL6 A;  5DL5 A;  3SZV A;  3AA1 B;  4LSI A;  3KVD D;  4O49 A;  2F1V A;  6PRN A;  3HOE A;  3POX A;  2K0L A;  4GCQ A;  1HXX A;  3A2S X;  3POU A;  3AA6 A;  1MM5 A;  4GCP A;  4D5U A;  4XNL A;  1IZN B;  4O3W A;  2KXP B;  4C69 X;  2O4V A;  5IYU A;  3JTY A;  8PRN A;  1THQ A;  2J4U P;  5JDP A;  4E1T A;  2JMM A;  4FOZ A;  1HXU A;  4F4B A;  5T5F A;  1MPF A;  5DL7 A;  2XE3 A;  4FZM A;  4AKR B;  2W80 C;  4AZL A;  4B61 A;  2XE1 A;  3UU2 A;  2QTK A;  1ORM A;  4LSE A;  1GFM A;  1OPF A;  1PRN A;  4D64 A;  2FGQ X;  4O4U A;  1BXW A;  3PQU A;  1G90 A;  3PQS A;  4O3Z A;  1Q9F A;  3LK2 A;  3POR A;  4RL9 A;  4LSH A;  2M07 A;  4FRX A;  1GFO A;  2F1T A;  2GE4 A;  3VZT X;  4E1S A;  4KR4 A;  4O4X A;  1MM4 A;  1QJ8 A;  1P4T A;  4AYI D;  2Y2X A;  3DA4 A;  3V8U A;  2KZ7 B;  1H6S 1;  3HOL A;  3EMN X;  3AA1 A;  2MNH A;  3RBH A;  5AFU L;  1GFQ A;  4GHB A;  4N58 A;  1HXT A;  3AAA A;  5ADX K;  2J1N A;  2POR A;  4FSO A;  4LSF A;  2YPV A;  1YS5 A;  3C5O A;  3AAA B;  1ZHX A;  3VY9 X;  4AYN A;  4AKM A;  1QJ9 A;  3LK3 B;  4FT6 A;  2K4T A;  1ZHT A;  2XE2 A;  2N2L A;  2ZFG A;  5ADX L;  1GFN A;  2FGR A;  4XNK A;  3T20 A;  2ZLD A;  2X27 X;  3AAE A;  5FVN A;  2ODJ A;  3SY7 A;  4G76 A;  3K19 A;  3UPG A;  2XMX A;  4RJX A;  3SZD A;  4AYD C;  4G75 A;  5G26 A;  3AAE B;  4AFK A;  5EE2 A;  2M06 A;  3DA3 A;  3G7G A;  3VZU X;  3POQ A;  2Y0H A;  2KC0 A;  4GF4 A;  3LK3 A;  3AA6 B;  4FZL A;  5D5D A;  3SYS A;  3T0S A;  2KXP A;  3QRA A;  1GFP A;  3LK4 1;  4D65 A;  4QQ1 A;  1Q9G A;  3AA0 B;  4AKR A;  3VE2 A;  4RLB A;  3NSG A;  4KRA A;  1PHO A;  1ZHW A;  3UAQ A;  2Y7S A;  2Y0K A;  2KZ7 A;  3GP6 A;  4U9C A;  4N59 A;  1QJP A;  3O0E A;  3HW9 A;  4JFB A;  4RJW A;  3HWB A;  3QRC A;  3T24 A;  3SYB A;  3WI5 A;  2LHF A;  4Z3T A;  3WI4 A;  2XG6 A;  1ZHZ A;  4AYE C;  3LK4 2;  4FES A;  3TZG A;  3AA0 A;  3VZW X;  2XTR A;  2XTQ A;  2Y0L A;  2KDY A;  3AA7 A;  5DL8 A;  4PUX A;  4AYM C;  2ERV A;  2PRN A;  4KR8 A;  4JCH A;  5PRN A;  2XE5 A;  3AA7 B;  4GCS A;  3VY8 X;  5AFU K;  4RLC A;  1BH3 A;  3PRN A;  4FMS A;  4AUI A;  1ZHY A;  4FUV A;  4BUM X;  3LK2 B;  4O3X B;  3VE1 A;  4O3Y A;  2YNK A;  1E54 A;  3FYX A;  4FRT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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