4B0YA

Determination of x-ray structure of human soul by molecular replacement
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
179
structure length
168
Chain Sequence
AVETPGWKAPEGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEKVYYTAGYNKLLNRNNEVWLIQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Human Soul: A Heme-Binding or a Bh3 Domain-Containing Protein
rcsb
molecule tags Apoptosis
source organism Homo sapiens
molecule keywords HEME-BINDING PROTEIN 2
total genus 41
structure length 168
sequence length 179
ec nomenclature
pdb deposition date 2012-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04832 SOUL SOUL heme-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.80.10 Alpha Beta Alpha-Beta Barrel Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A Regulatory factor, effector binding domain 4b0yA00
5KAXA 4AYZA 5KCBA 1EXIA 1JYHA 4B0YA 3Q5SA 3Q3DA 5GQQA 1EXJA 3D71A 5KATA 1BOWA 4A1MA 3Q5PA 2GOVA 3B49A 2HVAA 5KAUA 3E0HA 2BOWA 3LURA 3Q5RA 1D5YA 3Q1MA 1R8EA 3Q2YA 5KAVA 3D6YA 3D70A 2KCUA 3IAOA 3GK6A 4AYZB 3R8KA 3R8JA 3D6ZA 5KAWA
chains in the Genus database with same CATH superfamily
5KAXA 4AYZA 5KCBA 1EXIA 1JYHA 4B0YA 3Q5SA 3Q3DA 5GQQA 1EXJA 3D71A 5KATA 1BOWA 4A1MA 3Q5PA 2GOVA 3B49A 2HVAA 5KAUA 3E0HA 2BOWA 3LURA 3Q5RA 1D5YA 3Q1MA 1R8EA 3Q2YA 5KAVA 3D6YA 3D70A 2KCUA 3IAOA 3GK6A 4AYZB 3R8KA 3R8JA 3D6ZA 5KAWA
chains in the Genus database with same CATH topology
5KAXA 4AYZA 5KCBA 1EXIA 1JYHA 4B0YA 3Q5SA 3Q3DA 5GQQA 1EXJA 3D71A 5KATA 1BOWA 4A1MA 3Q5PA 2GOVA 3B49A 2HVAA 5KAUA 3E0HA 2BOWA 3LURA 3Q5RA 1D5YA 3Q1MA 1R8EA 3Q2YA 5KAVA 3D6YA 3D70A 2KCUA 3IAOA 3GK6A 4AYZB 3R8KA 3R8JA 3D6ZA 5KAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KAX A;  4AYZ A;  5KCB A;  1EXI A;  1JYH A;  4B0Y A;  3Q5S A;  3Q3D A;  5GQQ A;  1EXJ A;  3D71 A;  5KAT A;  1BOW A;  4A1M A;  3Q5P A;  2GOV A;  3B49 A;  2HVA A;  5KAU A;  3E0H A;  2BOW A;  3LUR A;  3Q5R A;  1D5Y A;  3Q1M A;  1R8E A;  3Q2Y A;  5KAV A;  3D6Y A;  3D70 A;  2KCU A;  3IAO A;  3GK6 A;  4AYZ B;  3R8K A;  3R8J A;  3D6Z A;  5KAW A; 
#chains in the Genus database with same CATH topology
 5KAX A;  4AYZ A;  5KCB A;  1EXI A;  1JYH A;  4B0Y A;  3Q5S A;  3Q3D A;  5GQQ A;  1EXJ A;  3D71 A;  5KAT A;  1BOW A;  4A1M A;  3Q5P A;  2GOV A;  3B49 A;  2HVA A;  5KAU A;  3E0H A;  2BOW A;  3LUR A;  3Q5R A;  1D5Y A;  3Q1M A;  1R8E A;  3Q2Y A;  5KAV A;  3D6Y A;  3D70 A;  2KCU A;  3IAO A;  3GK6 A;  4AYZ B;  3R8K A;  3R8J A;  3D6Z A;  5KAW A; 
#chains in the Genus database with same CATH homology
 5KAX A;  4AYZ A;  5KCB A;  1EXI A;  1JYH A;  4B0Y A;  3Q5S A;  3Q3D A;  5GQQ A;  1EXJ A;  3D71 A;  5KAT A;  1BOW A;  4A1M A;  3Q5P A;  2GOV A;  3B49 A;  2HVA A;  5KAU A;  3E0H A;  2BOW A;  3LUR A;  3Q5R A;  1D5Y A;  3Q1M A;  1R8E A;  3Q2Y A;  5KAV A;  3D6Y A;  3D70 A;  2KCU A;  3IAO A;  3GK6 A;  4AYZ B;  3R8K A;  3R8J A;  3D6Z A;  5KAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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