4B23A

Unprecedented sculpting of dna at abasic sites by dna glycosylase homolog mag2
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
206
structure length
206
Chain Sequence
KDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
source organism Schizosaccharomyces pombe
publication title Sculpting of DNA at Abasic Sites by DNA Glycosylase Homolog Mag2.
pubmed doi rcsb
molecule keywords MAG2, DNA-3-METHYLADENINE GLYCOSYLASE 2
total genus 75
structure length 206
sequence length 206
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 2012-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4b23A02
1.10.1670.40 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Endonuclease Iii, domain 2 4b23A01
1P59A 4E9GA 2H56A 1KG7A 1NKUA 1YQLA 2NOFA 1LWYA 3CVSA 1KEAA 4UNFA 3CWAA 1LWWA 1M3QA 1XQOA 1KG3A 4AIAA 2JHJA 2JG6A 2NOEA 1YQMA 4YPRA 3F0ZA 3N5NX 3KTUA 1N39A 1MUNA 4EJZA 1DIZA 1N3CA 3IHOA 1M3HA 1MUYA 1YQKA 3FSPA 3N0UA 3KNTA 3I0XA 3IH7A 4B21A 2NOBA 3OGDA 1ORPA 4UOBA 4OFHA 4EA5A 1MUDA 3G0QA 3S6IA 1PU6A 4EW0A 4OFAA 3OH6A 4EJYA 1WEFA 5AN4A 2NOIA 3I0WA 4E9HA 4B22A 2JHNA 1EBMA 1MPGA 4E9EA 1N3AA 1KG5A 1RRQA 2XHIA 1FN7A 1KG2A 3FHGA 4AI4A 2OFKA 4HSBA 1HU0A 4PIIA 1LWVA 1XG7A 3OH9A 3CVTA 3CWSA 1PU7A 5DPKA 1XQPA 2NOLA 3F10A 4YPHA 2NOZA 1RRSA 1KO9A 4EA4A 1KG6A 1P7MA 1KG4A 4B24A 1VRLA 4AI5A 4DK9A 3D4VA 1ORNA 3CW7A 4E9FA 3CWTA 2YG8A 3CWUA 1WEIA 5KN8A 4OFEA 2I5WA 4EVVA 4YOQA 1WEGA 2ABKA 1PU8A 5KN9A 3FHFA 5CHZA 2NOHA 1LMZA 2YG9A 1PVSA 1KQJA 1YQRA 1NGNA 4EW4A 4B23A 2OFIA
chains in the Genus database with same CATH superfamily
1P59A 4E9GA 3OYIA 4BDZA 2H56A 1KG7A 1NKUA 3LCNA 1YQLA 2NOFA 3L2QA 1LWYA 3OY9A 3CVSA 4ZTJA 1KEAA 4UNFA 2W03A 3L2UA 3CWAA 1LWWA 1M3QA 1XQOA 4E7HA 1KG3A 4AIAA 3OYDA 4NZGA 2JHJA 2JG6A 2NOEA 4BE1A 3VW4A 1YQMA 3OYCA 4YPRA 3F0ZA 3N5NX 3KTUA 1N39A 1MUNA 4EJZA 3OYGA 1DIZA 1N3CA 3IHOA 3OYEA 1M3HA 1MUYA 1YQKA 3FSPA 3N0UA 3KNTA 4IKFA 3I0XA 3IH7A 4E7IA 4B21A 3OYKA 2NOBA 3OGDA 5FROA 4UOBA 1ORPA 4OFHA 4EA5A 1MUDA 3G0QA 5FRNA 3S6IA 1PU6A 3OS1A 4EW0A 4OFAA 3S3NA 3OYLA 3OH6A 4EJYA 1WEFA 5AN4A 2NOIA 3I0WA 3OYJA 4B22A 4E9HA 2JHNA 1EBMA 1MPGA 4E9EA 1N3AA 1KG5A 1RRQA 2XHIA 1FN7A 1KG2A 3FHGA 2JPSA 4AI4A 2OFKA 4HSBA 1HU0A 4PIIA 1LWVA 1XG7A 3OH9A 4ZTFA 3CVTA 1PU7A 5DPKA 3CWSA 1XQPA 3OYAA 2NOLA 3F10A 3OYBA 4YPHA 2NOZA 4BACA 1RRSA 1KO9A 4EA4A 1KG6A 1P7MA 1KG4A 3OS0A 1U84A 4E7KA 3OS2A 4B24A 1VRLA 4AI5A 4DK9A 3D4VA 3L2RA 4B23A 1ORNA 4BE2A 3S3OA 4BE0A 3CW7A 4E9FA 3CWTA 2YG8A 3NNQA 3CWUA 1WEIA 5KN8A 4OFEA 5FRMA 2I5WA 2V75A 3L2VA 4YOQA 4EVVA 1WEGA 2W04A 2ABKA 3OYHA 3OYFA 3L2WA 4E7LA 1PU8A 5KN9A 3FHFA 4BDYA 3R2XC 5CHZA 2NOHA 1LMZA 3OYNA 2YG9A 4E7JA 1PVSA 1KQJA 1YQRA 1NGNA 3S3MA 4EW4A 3OYMA 2OFIA
chains in the Genus database with same CATH topology
1P59A 4E9GA 2H56A 1KG7A 1NKUA 1YQLA 2NOFA 1LWYA 3CVSA 1KEAA 4UNFA 3CWAA 1LWWA 1M3QA 1XQOA 1KG3A 4AIAA 2JHJA 2JG6A 2NOEA 1YQMA 4YPRA 3F0ZA 3N5NX 3KTUA 1N39A 1MUNA 4EJZA 1DIZA 1N3CA 3IHOA 1M3HA 1MUYA 1YQKA 3FSPA 3N0UA 3KNTA 3I0XA 3IH7A 4B21A 2NOBA 3OGDA 1ORPA 4UOBA 4OFHA 4EA5A 1MUDA 3G0QA 3S6IA 1PU6A 4EW0A 4OFAA 3OH6A 4EJYA 1WEFA 5AN4A 2NOIA 3I0WA 4E9HA 4B22A 2JHNA 1EBMA 1MPGA 4E9EA 1N3AA 1KG5A 1RRQA 2XHIA 1FN7A 1KG2A 3FHGA 4AI4A 2OFKA 4HSBA 1HU0A 4PIIA 1LWVA 1XG7A 3OH9A 3CVTA 3CWSA 1PU7A 5DPKA 1XQPA 2NOLA 3F10A 4YPHA 2NOZA 1RRSA 1KO9A 4EA4A 1KG6A 1P7MA 1KG4A 4B24A 1VRLA 4AI5A 4DK9A 3D4VA 1ORNA 3CW7A 4E9FA 3CWTA 2YG8A 3CWUA 1WEIA 5KN8A 4OFEA 2I5WA 4EVVA 4YOQA 1WEGA 2ABKA 1PU8A 5KN9A 3FHFA 5CHZA 2NOHA 1LMZA 2YG9A 1PVSA 1KQJA 1YQRA 1NGNA 4EW4A 4B23A 2OFIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P59 A;  4E9G A;  2H56 A;  1KG7 A;  1NKU A;  1YQL A;  2NOF A;  1LWY A;  3CVS A;  1KEA A;  4UNF A;  3CWA A;  1LWW A;  1M3Q A;  1XQO A;  1KG3 A;  4AIA A;  2JHJ A;  2JG6 A;  2NOE A;  1YQM A;  4YPR A;  3F0Z A;  3N5N X;  3KTU A;  1N39 A;  1MUN A;  4EJZ A;  1DIZ A;  1N3C A;  3IHO A;  1M3H A;  1MUY A;  1YQK A;  3FSP A;  3N0U A;  3KNT A;  3I0X A;  3IH7 A;  4B21 A;  2NOB A;  3OGD A;  1ORP A;  4UOB A;  4OFH A;  4EA5 A;  1MUD A;  3G0Q A;  3S6I A;  1PU6 A;  4EW0 A;  4OFA A;  3OH6 A;  4EJY A;  1WEF A;  5AN4 A;  2NOI A;  3I0W A;  4E9H A;  4B22 A;  2JHN A;  1EBM A;  1MPG A;  4E9E A;  1N3A A;  1KG5 A;  1RRQ A;  2XHI A;  1FN7 A;  1KG2 A;  3FHG A;  4AI4 A;  2OFK A;  4HSB A;  1HU0 A;  4PII A;  1LWV A;  1XG7 A;  3OH9 A;  3CVT A;  3CWS A;  1PU7 A;  5DPK A;  1XQP A;  2NOL A;  3F10 A;  4YPH A;  2NOZ A;  1RRS A;  1KO9 A;  4EA4 A;  1KG6 A;  1P7M A;  1KG4 A;  4B24 A;  1VRL A;  4AI5 A;  4DK9 A;  3D4V A;  1ORN A;  3CW7 A;  4E9F A;  3CWT A;  2YG8 A;  3CWU A;  1WEI A;  5KN8 A;  4OFE A;  2I5W A;  4EVV A;  4YOQ A;  1WEG A;  2ABK A;  1PU8 A;  5KN9 A;  3FHF A;  5CHZ A;  2NOH A;  1LMZ A;  2YG9 A;  1PVS A;  1KQJ A;  1YQR A;  1NGN A;  4EW4 A;  4B23 A;  2OFI A; 
#chains in the Genus database with same CATH topology
 1P59 A;  4E9G A;  3OYI A;  4BDZ A;  2H56 A;  1KG7 A;  1NKU A;  3LCN A;  1YQL A;  2NOF A;  3L2Q A;  1LWY A;  3OY9 A;  3CVS A;  4ZTJ A;  1KEA A;  4UNF A;  2W03 A;  3L2U A;  3CWA A;  1LWW A;  1M3Q A;  1XQO A;  4E7H A;  1KG3 A;  4AIA A;  3OYD A;  4NZG A;  2JHJ A;  2JG6 A;  2NOE A;  4BE1 A;  3VW4 A;  1YQM A;  3OYC A;  4YPR A;  3F0Z A;  3N5N X;  3KTU A;  1N39 A;  1MUN A;  4EJZ A;  3OYG A;  1DIZ A;  1N3C A;  3IHO A;  3OYE A;  1M3H A;  1MUY A;  1YQK A;  3FSP A;  3N0U A;  3KNT A;  4IKF A;  3I0X A;  3IH7 A;  4E7I A;  4B21 A;  3OYK A;  2NOB A;  3OGD A;  5FRO A;  4UOB A;  1ORP A;  4OFH A;  4EA5 A;  1MUD A;  3G0Q A;  5FRN A;  3S6I A;  1PU6 A;  3OS1 A;  4EW0 A;  4OFA A;  3S3N A;  3OYL A;  3OH6 A;  4EJY A;  1WEF A;  5AN4 A;  2NOI A;  3I0W A;  3OYJ A;  4B22 A;  4E9H A;  2JHN A;  1EBM A;  1MPG A;  4E9E A;  1N3A A;  1KG5 A;  1RRQ A;  2XHI A;  1FN7 A;  1KG2 A;  3FHG A;  2JPS A;  4AI4 A;  2OFK A;  4HSB A;  1HU0 A;  4PII A;  1LWV A;  1XG7 A;  3OH9 A;  4ZTF A;  3CVT A;  1PU7 A;  5DPK A;  3CWS A;  1XQP A;  3OYA A;  2NOL A;  3F10 A;  3OYB A;  4YPH A;  2NOZ A;  4BAC A;  1RRS A;  1KO9 A;  4EA4 A;  1KG6 A;  1P7M A;  1KG4 A;  3OS0 A;  1U84 A;  4E7K A;  3OS2 A;  4B24 A;  1VRL A;  4AI5 A;  4DK9 A;  3D4V A;  3L2R A;  4B23 A;  1ORN A;  4BE2 A;  3S3O A;  4BE0 A;  3CW7 A;  4E9F A;  3CWT A;  2YG8 A;  3NNQ A;  3CWU A;  1WEI A;  5KN8 A;  4OFE A;  5FRM A;  2I5W A;  2V75 A;  3L2V A;  4YOQ A;  4EVV A;  1WEG A;  2W04 A;  2ABK A;  3OYH A;  3OYF A;  3L2W A;  4E7L A;  1PU8 A;  5KN9 A;  3FHF A;  4BDY A;  3R2X C;  5CHZ A;  2NOH A;  1LMZ A;  3OYN A;  2YG9 A;  4E7J A;  1PVS A;  1KQJ A;  1YQR A;  1NGN A;  3S3M A;  4EW4 A;  3OYM A;  2OFI A; 
#chains in the Genus database with same CATH homology
 1P59 A;  4E9G A;  2H56 A;  1KG7 A;  1NKU A;  1YQL A;  2NOF A;  1LWY A;  3CVS A;  1KEA A;  4UNF A;  3CWA A;  1LWW A;  1M3Q A;  1XQO A;  1KG3 A;  4AIA A;  2JHJ A;  2JG6 A;  2NOE A;  1YQM A;  4YPR A;  3F0Z A;  3N5N X;  3KTU A;  1N39 A;  1MUN A;  4EJZ A;  1DIZ A;  1N3C A;  3IHO A;  1M3H A;  1MUY A;  1YQK A;  3FSP A;  3N0U A;  3KNT A;  3I0X A;  3IH7 A;  4B21 A;  2NOB A;  3OGD A;  1ORP A;  4UOB A;  4OFH A;  4EA5 A;  1MUD A;  3G0Q A;  3S6I A;  1PU6 A;  4EW0 A;  4OFA A;  3OH6 A;  4EJY A;  1WEF A;  5AN4 A;  2NOI A;  3I0W A;  4E9H A;  4B22 A;  2JHN A;  1EBM A;  1MPG A;  4E9E A;  1N3A A;  1KG5 A;  1RRQ A;  2XHI A;  1FN7 A;  1KG2 A;  3FHG A;  4AI4 A;  2OFK A;  4HSB A;  1HU0 A;  4PII A;  1LWV A;  1XG7 A;  3OH9 A;  3CVT A;  3CWS A;  1PU7 A;  5DPK A;  1XQP A;  2NOL A;  3F10 A;  4YPH A;  2NOZ A;  1RRS A;  1KO9 A;  4EA4 A;  1KG6 A;  1P7M A;  1KG4 A;  4B24 A;  1VRL A;  4AI5 A;  4DK9 A;  3D4V A;  1ORN A;  3CW7 A;  4E9F A;  3CWT A;  2YG8 A;  3CWU A;  1WEI A;  5KN8 A;  4OFE A;  2I5W A;  4EVV A;  4YOQ A;  1WEG A;  2ABK A;  1PU8 A;  5KN9 A;  3FHF A;  5CHZ A;  2NOH A;  1LMZ A;  2YG9 A;  1PVS A;  1KQJ A;  1YQR A;  1NGN A;  4EW4 A;  4B23 A;  2OFI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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