4B3SD

Crystal structure of the 30s ribosome in complex with compound 37
Total Genus 57
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title 4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 57
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2012-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 4b3sD01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 4b3sD02
4LF4D 1IBLD 2UXCD 4B3MD 3T1YD 1HNXD 4KHPD 2UXBD 1N32D 4LFBD 1H3EA 4JI8D 1C05A 4DV3D 1KSLA 4JI1D 1I94D 2UUAD 1XMOD 4YY3D 4OX9D 2JANA 4DR6D 4JI4D 1P9KA 4LF5D 4JI7D 2ISTA 4X65D 4DV1D 4DUYD 4DV5D 4B3SD 1KSKA 1H3FA 4DV0D 1XNRD 4LGTA 2K6PA 4DR5D 5BR8D 4LF6D 1VIOA 4JI5D 4LF8D 1XMQD 1DM9A 4LF9D 2VQED 4DV4D 4NXMD 4JI3D 4X62D 4JI6D 3T1HD 4X66D 4DR2D 4JV5D 4DR3D 1JH3A 2KTLA 4DR7D 4LFAD 2VQFD 4DUZD 3OTOD 4DV2D 2E5LD 1N36D 1FKAD 1FJGD 4DR1D 2UUCD 4DV6D 1XNQD 4GKKD 1HR0D 4B3RD 2F4VD 4DR4D 1IBKD 1N33D 5LMND 4B3TD 4LF7D 3HP7A 2UUBD 1J5ED 4X64D 1HNZD 4K0KD 1C06A 3DH3A 5LMUD 5IWAD 3KBGA 4GKJD 1N34D 4YHHD 2UU9D 1HNWD 4NXND 2HHHD 4JI2D 4AQYD 1KSVA 4JYAD 2UXDD 4OUDA 4LFCD 4JI0D 2ZM6D 1IBMD 4DV7D
chains in the Genus database with same CATH superfamily
4LF4D 4W5VB 1Y8QB 1Y8RB 1IBLD 2UXCD 4B3MD 5FLXE 3KYCB 3T1YD 1HNXD 1Y8XB 4KHPD 2UXBD 1N32D 4LFBD 5A2QE 1H3EA 4JI8D 1C05A 4DV3D 1KSLA 4JI1D 1I94D 2UUAD 1XMOD 4YY3D 3KYDB 4OX9D 2JANA 4DR6D 4JI4D 1P9KA 4LF5D 4JI7D 3J7AF 4II3A 2ISTA 4X65D 4DV1D 4DUYD 4DV5D 4B3SD 1KSKA 1H3FA 5FQ2B 4DV0D 1XNRD 4LGTA 2K6PA 4DR5D 5BR8D 4LF6D 1VIOA 4JI5D 4LF8D 1XMQD 1DM9A 4LF9D 2VQED 4DV4D 2I1SA 2NVUB 4NXMD 4JI3D 4X62D 4JI6D 3T1HD 4NNJA 4X66D 4DR2D 4JV5D 4DR3D 1JH3A 2KTLA 2ZTBA 4DR7D 3ONHA 3ONGA 5KNLA 3J81E 4LFAD 2VQFD 4DUZD 3OTOD 5IT9E 4DV2D 2E5LD 3CMMA 1N36D 1FKAD 1FJGD 4DR1D 2UUCD 4DV6D 1XNQD 2LQ7A 4GKKD 1HR0D 4B3RD 2F4VD 3J80E 4DR4D 1IBKD 1N33D 5LMND 4B3TD 4LF7D 3HP7A 2UUBD 1J5ED 4X64D 1HNZD 4K0KD 1C06A 4II2A 3DH3A 5LMUD 2L3NA 5IWAD 3KBGA 4GKJD 1N34D 4YHHD 2UU9D 3FN1A 1HNWD 4NXND 2HHHD 4JI2D 5LL6S 4AQYD 1KSVA 4JYAD 2UXDD 4OUDA 4LFCD 4JI0D 2ZM6D 1IBMD 4DV7D 3JAME
chains in the Genus database with same CATH topology
4LF4D 1IBLD 2UXCD 4B3MD 3T1YD 1HNXD 4KHPD 2UXBD 1N32D 4LFBD 1H3EA 4JI8D 1C05A 4DV3D 1KSLA 4JI1D 1I94D 2UUAD 1XMOD 4YY3D 4OX9D 2JANA 4DR6D 4JI4D 1P9KA 4LF5D 4JI7D 2ISTA 4X65D 4DV1D 4DUYD 4DV5D 4B3SD 1KSKA 1H3FA 4DV0D 1XNRD 4LGTA 2K6PA 4DR5D 5BR8D 4LF6D 1VIOA 4JI5D 4LF8D 1XMQD 1DM9A 4LF9D 2VQED 4DV4D 4NXMD 4JI3D 4X62D 4JI6D 3T1HD 4X66D 4DR2D 4JV5D 4DR3D 1JH3A 2KTLA 4DR7D 4LFAD 2VQFD 4DUZD 3OTOD 4DV2D 2E5LD 1N36D 1FKAD 1FJGD 4DR1D 2UUCD 4DV6D 1XNQD 4GKKD 1HR0D 4B3RD 2F4VD 4DR4D 1IBKD 1N33D 5LMND 4B3TD 4LF7D 3HP7A 2UUBD 1J5ED 4X64D 1HNZD 4K0KD 1C06A 3DH3A 5LMUD 2L3NA 5IWAD 3KBGA 4GKJD 1N34D 4YHHD 2UU9D 1HNWD 4NXND 2HHHD 4JI2D 4AQYD 1KSVA 4JYAD 2UXDD 4OUDA 4LFCD 4JI0D 2ZM6D 1IBMD 4DV7D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LF4 D;  1IBL D;  2UXC D;  4B3M D;  3T1Y D;  1HNX D;  4KHP D;  2UXB D;  1N32 D;  4LFB D;  1H3E A;  4JI8 D;  1C05 A;  4DV3 D;  1KSL A;  4JI1 D;  1I94 D;  2UUA D;  1XMO D;  4YY3 D;  4OX9 D;  2JAN A;  4DR6 D;  4JI4 D;  1P9K A;  4LF5 D;  4JI7 D;  2IST A;  4X65 D;  4DV1 D;  4DUY D;  4DV5 D;  4B3S D;  1KSK A;  1H3F A;  4DV0 D;  1XNR D;  4LGT A;  2K6P A;  4DR5 D;  5BR8 D;  4LF6 D;  1VIO A;  4JI5 D;  4LF8 D;  1XMQ D;  1DM9 A;  4LF9 D;  2VQE D;  4DV4 D;  4NXM D;  4JI3 D;  4X62 D;  4JI6 D;  3T1H D;  4X66 D;  4DR2 D;  4JV5 D;  4DR3 D;  1JH3 A;  2KTL A;  4DR7 D;  4LFA D;  2VQF D;  4DUZ D;  3OTO D;  4DV2 D;  2E5L D;  1N36 D;  1FKA D;  1FJG D;  4DR1 D;  2UUC D;  4DV6 D;  1XNQ D;  4GKK D;  1HR0 D;  4B3R D;  2F4V D;  4DR4 D;  1IBK D;  1N33 D;  5LMN D;  4B3T D;  4LF7 D;  3HP7 A;  2UUB D;  1J5E D;  4X64 D;  1HNZ D;  4K0K D;  1C06 A;  3DH3 A;  5LMU D;  5IWA D;  3KBG A;  4GKJ D;  1N34 D;  4YHH D;  2UU9 D;  1HNW D;  4NXN D;  2HHH D;  4JI2 D;  4AQY D;  1KSV A;  4JYA D;  2UXD D;  4OUD A;  4LFC D;  4JI0 D;  2ZM6 D;  1IBM D;  4DV7 D; 
#chains in the Genus database with same CATH topology
 4LF4 D;  4W5V B;  1Y8Q B;  1Y8R B;  1IBL D;  2UXC D;  4B3M D;  5FLX E;  3KYC B;  3T1Y D;  1HNX D;  1Y8X B;  4KHP D;  2UXB D;  1N32 D;  4LFB D;  5A2Q E;  1H3E A;  4JI8 D;  1C05 A;  4DV3 D;  1KSL A;  4JI1 D;  1I94 D;  2UUA D;  1XMO D;  4YY3 D;  3KYD B;  4OX9 D;  2JAN A;  4DR6 D;  4JI4 D;  1P9K A;  4LF5 D;  4JI7 D;  3J7A F;  4II3 A;  2IST A;  4X65 D;  4DV1 D;  4DUY D;  4DV5 D;  4B3S D;  1KSK A;  1H3F A;  5FQ2 B;  4DV0 D;  1XNR D;  4LGT A;  2K6P A;  4DR5 D;  5BR8 D;  4LF6 D;  1VIO A;  4JI5 D;  4LF8 D;  1XMQ D;  1DM9 A;  4LF9 D;  2VQE D;  4DV4 D;  2I1S A;  2NVU B;  4NXM D;  4JI3 D;  4X62 D;  4JI6 D;  3T1H D;  4NNJ A;  4X66 D;  4DR2 D;  4JV5 D;  4DR3 D;  1JH3 A;  2KTL A;  2ZTB A;  4DR7 D;  3ONH A;  3ONG A;  5KNL A;  3J81 E;  4LFA D;  2VQF D;  4DUZ D;  3OTO D;  5IT9 E;  4DV2 D;  2E5L D;  3CMM A;  1N36 D;  1FKA D;  1FJG D;  4DR1 D;  2UUC D;  4DV6 D;  1XNQ D;  2LQ7 A;  4GKK D;  1HR0 D;  4B3R D;  2F4V D;  3J80 E;  4DR4 D;  1IBK D;  1N33 D;  5LMN D;  4B3T D;  4LF7 D;  3HP7 A;  2UUB D;  1J5E D;  4X64 D;  1HNZ D;  4K0K D;  1C06 A;  4II2 A;  3DH3 A;  5LMU D;  2L3N A;  5IWA D;  3KBG A;  4GKJ D;  1N34 D;  4YHH D;  2UU9 D;  3FN1 A;  1HNW D;  4NXN D;  2HHH D;  4JI2 D;  5LL6 S;  4AQY D;  1KSV A;  4JYA D;  2UXD D;  4OUD A;  4LFC D;  4JI0 D;  2ZM6 D;  1IBM D;  4DV7 D;  3JAM E; 
#chains in the Genus database with same CATH homology
 4LF4 D;  1IBL D;  2UXC D;  4B3M D;  3T1Y D;  1HNX D;  4KHP D;  2UXB D;  1N32 D;  4LFB D;  1H3E A;  4JI8 D;  1C05 A;  4DV3 D;  1KSL A;  4JI1 D;  1I94 D;  2UUA D;  1XMO D;  4YY3 D;  4OX9 D;  2JAN A;  4DR6 D;  4JI4 D;  1P9K A;  4LF5 D;  4JI7 D;  2IST A;  4X65 D;  4DV1 D;  4DUY D;  4DV5 D;  4B3S D;  1KSK A;  1H3F A;  4DV0 D;  1XNR D;  4LGT A;  2K6P A;  4DR5 D;  5BR8 D;  4LF6 D;  1VIO A;  4JI5 D;  4LF8 D;  1XMQ D;  1DM9 A;  4LF9 D;  2VQE D;  4DV4 D;  4NXM D;  4JI3 D;  4X62 D;  4JI6 D;  3T1H D;  4X66 D;  4DR2 D;  4JV5 D;  4DR3 D;  1JH3 A;  2KTL A;  4DR7 D;  4LFA D;  2VQF D;  4DUZ D;  3OTO D;  4DV2 D;  2E5L D;  1N36 D;  1FKA D;  1FJG D;  4DR1 D;  2UUC D;  4DV6 D;  1XNQ D;  4GKK D;  1HR0 D;  4B3R D;  2F4V D;  4DR4 D;  1IBK D;  1N33 D;  5LMN D;  4B3T D;  4LF7 D;  3HP7 A;  2UUB D;  1J5E D;  4X64 D;  1HNZ D;  4K0K D;  1C06 A;  3DH3 A;  5LMU D;  2L3N A;  5IWA D;  3KBG A;  4GKJ D;  1N34 D;  4YHH D;  2UU9 D;  1HNW D;  4NXN D;  2HHH D;  4JI2 D;  4AQY D;  1KSV A;  4JYA D;  2UXD D;  4OUD A;  4LFC D;  4JI0 D;  2ZM6 D;  1IBM D;  4DV7 D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...