4B3TD

Crystal structure of the 30s ribosome in complex with compound 39
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
publication title 4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
pubmed doi rcsb
total genus 62
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2012-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 4b3tD01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 4b3tD02
4DR6D 2ISTA 1I94D 4JI4D 1HR0D 4LF6D 2UXDD 4X64D 4JV5D 4DV3D 4B3MD 3OTOD 1N33D 4DV2D 4JI2D 4DR1D 4JI0D 1C06A 1N32D 1XMQD 5LMND 4LF5D 4DV4D 2UUCD 4JI8D 4DV1D 4DV0D 3T1HD 2JANA 3DH3A 2UUBD 2UXCD 3HP7A 4X65D 4DR2D 4LF9D 4DV6D 1IBKD 1DM9A 2F4VD 1KSVA 4LGTA 2ZM6D 2VQED 4DUZD 4GKKD 5LMUD 1FJGD 1HNZD 1IBLD 4K0KD 4LF7D 3KBGA 1HNXD 4JI3D 4LFCD 1J5ED 4LF8D 4DR5D 4B3RD 4DR4D 1JH3A 5IWAD 4X66D 4JYAD 2E5LD 4NXND 2UUAD 1H3FA 2HHHD 1HNWD 4YHHD 3T1YD 4KHPD 4DV5D 4AQYD 4DV7D 1N34D 4GKJD 4B3TD 4DR7D 4LFBD 1P9KA 4JI1D 2UXBD 2UU9D 4OX9D 4OUDA 2VQFD 1VIOA 4LFAD 1KSKA 1XNRD 1H3EA 4YY3D 4JI7D 5BR8D 1IBMD 1C05A 4JI5D 1FKAD 1XNQD 4NXMD 2K6PA 4DR3D 1KSLA 1N36D 4LF4D 1XMOD 4DUYD 4JI6D 2KTLA 4B3SD 4X62D
chains in the Genus database with same CATH superfamily
4DR6D 2ISTA 4II2A 1I94D 4JI4D 1HR0D 5KNLA 4LF6D 2UXDD 4X64D 3J80E 3FN1A 4JV5D 4II3A 4DV3D 4B3MD 3OTOD 1N33D 4DV2D 1Y8QB 4JI2D 4DR1D 4JI0D 1C06A 2L3NA 1N32D 1XMQD 5LMND 4LF5D 4DV4D 2UUCD 4JI8D 4DV1D 4DV0D 3ONHA 3T1HD 2JANA 2ZTBA 3DH3A 2UUBD 2UXCD 3HP7A 4X65D 4DR2D 4LF9D 3J81E 4DV6D 1IBKD 1DM9A 2F4VD 1KSVA 4LGTA 2ZM6D 2VQED 4DUZD 4GKKD 5LMUD 1FJGD 1Y8XB 1HNZD 4NNJA 1IBLD 4K0KD 4LF7D 3KBGA 3ONGA 3KYCB 1HNXD 4JI3D 5IT9E 4LFCD 1J5ED 5LL6S 4LF8D 4DR5D 4B3RD 4DR4D 1JH3A 5IWAD 4X66D 4JYAD 2E5LD 4NXND 2UUAD 1H3FA 2HHHD 1HNWD 2NVUB 4YHHD 3T1YD 4KHPD 4DV5D 4AQYD 4DV7D 1N34D 4GKJD 4B3TD 5FLXE 4DR7D 4LFBD 3J7AF 1P9KA 4JI1D 1Y8RB 2LQ7A 2I1SA 2UXBD 2UU9D 4OX9D 4OUDA 2VQFD 1VIOA 4LFAD 1KSKA 1XNRD 3JAME 1H3EA 4YY3D 4JI7D 3KYDB 5BR8D 1IBMD 1C05A 4W5VB 5FQ2B 4JI5D 1FKAD 1XNQD 4NXMD 2K6PA 4DR3D 1KSLA 1N36D 4LF4D 1XMOD 4DUYD 4JI6D 3CMMA 2KTLA 4B3SD 5A2QE 4X62D
chains in the Genus database with same CATH topology
4DR6D 2ISTA 1I94D 4JI4D 1HR0D 4LF6D 2UXDD 4X64D 4JV5D 4DV3D 4B3MD 3OTOD 1N33D 4DV2D 4JI2D 4DR1D 4JI0D 1C06A 2L3NA 1N32D 1XMQD 5LMND 4LF5D 4DV4D 2UUCD 4JI8D 4DV1D 4DV0D 3T1HD 2JANA 3DH3A 2UUBD 2UXCD 3HP7A 4X65D 4DR2D 4LF9D 4DV6D 1IBKD 1DM9A 2F4VD 1KSVA 4LGTA 2ZM6D 2VQED 4DUZD 4GKKD 5LMUD 1FJGD 1HNZD 1IBLD 4K0KD 4LF7D 3KBGA 1HNXD 4JI3D 4LFCD 1J5ED 4LF8D 4DR5D 4B3RD 4DR4D 1JH3A 5IWAD 4X66D 4JYAD 2E5LD 4NXND 2UUAD 1H3FA 2HHHD 1HNWD 4YHHD 3T1YD 4KHPD 4DV5D 4AQYD 4DV7D 1N34D 4GKJD 4B3TD 4DR7D 4LFBD 1P9KA 4JI1D 2UXBD 2UU9D 4OX9D 4OUDA 2VQFD 1VIOA 4LFAD 1KSKA 1XNRD 1H3EA 4YY3D 4JI7D 5BR8D 1IBMD 1C05A 4JI5D 1FKAD 1XNQD 4NXMD 2K6PA 4DR3D 1KSLA 1N36D 4LF4D 1XMOD 4DUYD 4JI6D 2KTLA 4B3SD 4X62D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DR6 D;  2IST A;  1I94 D;  4JI4 D;  1HR0 D;  4LF6 D;  2UXD D;  4X64 D;  4JV5 D;  4DV3 D;  4B3M D;  3OTO D;  1N33 D;  4DV2 D;  4JI2 D;  4DR1 D;  4JI0 D;  1C06 A;  1N32 D;  1XMQ D;  5LMN D;  4LF5 D;  4DV4 D;  2UUC D;  4JI8 D;  4DV1 D;  4DV0 D;  3T1H D;  2JAN A;  3DH3 A;  2UUB D;  2UXC D;  3HP7 A;  4X65 D;  4DR2 D;  4LF9 D;  4DV6 D;  1IBK D;  1DM9 A;  2F4V D;  1KSV A;  4LGT A;  2ZM6 D;  2VQE D;  4DUZ D;  4GKK D;  5LMU D;  1FJG D;  1HNZ D;  1IBL D;  4K0K D;  4LF7 D;  3KBG A;  1HNX D;  4JI3 D;  4LFC D;  1J5E D;  4LF8 D;  4DR5 D;  4B3R D;  4DR4 D;  1JH3 A;  5IWA D;  4X66 D;  4JYA D;  2E5L D;  4NXN D;  2UUA D;  1H3F A;  2HHH D;  1HNW D;  4YHH D;  3T1Y D;  4KHP D;  4DV5 D;  4AQY D;  4DV7 D;  1N34 D;  4GKJ D;  4B3T D;  4DR7 D;  4LFB D;  1P9K A;  4JI1 D;  2UXB D;  2UU9 D;  4OX9 D;  4OUD A;  2VQF D;  1VIO A;  4LFA D;  1KSK A;  1XNR D;  1H3E A;  4YY3 D;  4JI7 D;  5BR8 D;  1IBM D;  1C05 A;  4JI5 D;  1FKA D;  1XNQ D;  4NXM D;  2K6P A;  4DR3 D;  1KSL A;  1N36 D;  4LF4 D;  1XMO D;  4DUY D;  4JI6 D;  2KTL A;  4B3S D;  4X62 D; 
#chains in the Genus database with same CATH topology
 4DR6 D;  2IST A;  4II2 A;  1I94 D;  4JI4 D;  1HR0 D;  5KNL A;  4LF6 D;  2UXD D;  4X64 D;  3J80 E;  3FN1 A;  4JV5 D;  4II3 A;  4DV3 D;  4B3M D;  3OTO D;  1N33 D;  4DV2 D;  1Y8Q B;  4JI2 D;  4DR1 D;  4JI0 D;  1C06 A;  2L3N A;  1N32 D;  1XMQ D;  5LMN D;  4LF5 D;  4DV4 D;  2UUC D;  4JI8 D;  4DV1 D;  4DV0 D;  3ONH A;  3T1H D;  2JAN A;  2ZTB A;  3DH3 A;  2UUB D;  2UXC D;  3HP7 A;  4X65 D;  4DR2 D;  4LF9 D;  3J81 E;  4DV6 D;  1IBK D;  1DM9 A;  2F4V D;  1KSV A;  4LGT A;  2ZM6 D;  2VQE D;  4DUZ D;  4GKK D;  5LMU D;  1FJG D;  1Y8X B;  1HNZ D;  4NNJ A;  1IBL D;  4K0K D;  4LF7 D;  3KBG A;  3ONG A;  3KYC B;  1HNX D;  4JI3 D;  5IT9 E;  4LFC D;  1J5E D;  5LL6 S;  4LF8 D;  4DR5 D;  4B3R D;  4DR4 D;  1JH3 A;  5IWA D;  4X66 D;  4JYA D;  2E5L D;  4NXN D;  2UUA D;  1H3F A;  2HHH D;  1HNW D;  2NVU B;  4YHH D;  3T1Y D;  4KHP D;  4DV5 D;  4AQY D;  4DV7 D;  1N34 D;  4GKJ D;  4B3T D;  5FLX E;  4DR7 D;  4LFB D;  3J7A F;  1P9K A;  4JI1 D;  1Y8R B;  2LQ7 A;  2I1S A;  2UXB D;  2UU9 D;  4OX9 D;  4OUD A;  2VQF D;  1VIO A;  4LFA D;  1KSK A;  1XNR D;  3JAM E;  1H3E A;  4YY3 D;  4JI7 D;  3KYD B;  5BR8 D;  1IBM D;  1C05 A;  4W5V B;  5FQ2 B;  4JI5 D;  1FKA D;  1XNQ D;  4NXM D;  2K6P A;  4DR3 D;  1KSL A;  1N36 D;  4LF4 D;  1XMO D;  4DUY D;  4JI6 D;  3CMM A;  2KTL A;  4B3S D;  5A2Q E;  4X62 D; 
#chains in the Genus database with same CATH homology
 4DR6 D;  2IST A;  1I94 D;  4JI4 D;  1HR0 D;  4LF6 D;  2UXD D;  4X64 D;  4JV5 D;  4DV3 D;  4B3M D;  3OTO D;  1N33 D;  4DV2 D;  4JI2 D;  4DR1 D;  4JI0 D;  1C06 A;  2L3N A;  1N32 D;  1XMQ D;  5LMN D;  4LF5 D;  4DV4 D;  2UUC D;  4JI8 D;  4DV1 D;  4DV0 D;  3T1H D;  2JAN A;  3DH3 A;  2UUB D;  2UXC D;  3HP7 A;  4X65 D;  4DR2 D;  4LF9 D;  4DV6 D;  1IBK D;  1DM9 A;  2F4V D;  1KSV A;  4LGT A;  2ZM6 D;  2VQE D;  4DUZ D;  4GKK D;  5LMU D;  1FJG D;  1HNZ D;  1IBL D;  4K0K D;  4LF7 D;  3KBG A;  1HNX D;  4JI3 D;  4LFC D;  1J5E D;  4LF8 D;  4DR5 D;  4B3R D;  4DR4 D;  1JH3 A;  5IWA D;  4X66 D;  4JYA D;  2E5L D;  4NXN D;  2UUA D;  1H3F A;  2HHH D;  1HNW D;  4YHH D;  3T1Y D;  4KHP D;  4DV5 D;  4AQY D;  4DV7 D;  1N34 D;  4GKJ D;  4B3T D;  4DR7 D;  4LFB D;  1P9K A;  4JI1 D;  2UXB D;  2UU9 D;  4OX9 D;  4OUD A;  2VQF D;  1VIO A;  4LFA D;  1KSK A;  1XNR D;  1H3E A;  4YY3 D;  4JI7 D;  5BR8 D;  1IBM D;  1C05 A;  4JI5 D;  1FKA D;  1XNQ D;  4NXM D;  2K6P A;  4DR3 D;  1KSL A;  1N36 D;  4LF4 D;  1XMO D;  4DUY D;  4JI6 D;  2KTL A;  4B3S D;  4X62 D; 
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similar chains in the pdb database (?% sequence similarity)

 
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