4B61A

In meso structure of alginate transporter, alge, from pseudomoas aeruginosa, pao1. crystal form 3.
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
452
structure length
429
Chain Sequence
PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
molecule tags Membrane protein
total genus 126
structure length 429
sequence length 452
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4b61A00
4B61A 5D5DA 3RBHA 5IYUA 4AFKA 4XNLA 4XNKA 4AZLA
chains in the Genus database with same CATH superfamily
1P4TA 5KAFO 2R4LA 3A0HO 5IYUA 2YNKA 1H6S1 1HXUA 3KVDD 3O0EA 4FSOA 1PRNA 3LK2A 1IZNA 4JFBA 4KR4A 4QQ1A 2WVPA 5H2FO 3PORA 2PRNA 1OSMA 3DWOX 3VY8X 2IWWA 3UPGA 4N75A 4AYEC 2O4VA 3SYBA 2LHFA 3HWBA 2F1VA 4Z3TA 5DL8A 5ADXK 3TZGA 4LSIA 4PR7A 3SZVA 4RLBA 2QTKA 2KZ7A 4O49A 3BRYA 2R88A 2XG6A 2J4UP 5ADXL 3V8UA 1QJ9A 3EMNX 4D5UA 6PRNA 1BT9A 2KXPA 3AAAB 3DZMA 3UAQA 4O3XB 3VZTX 4B61A 2FGQX 2JMMA 3JTYA 2XE3A 4GF4A 4AYDC 4O3ZA 3AA0A 4KR8A 5B66O 2N2LA 3AAEA 5DL6A 5AFUK 1MPFA 1T16A 3POUA 4FESA 2WJRA 3PGUA 4O4UA 2Y0KA 3HOLA 3PGRA 4LSFA 5EE2A 4AKRA 4GCSA 3VE2A 8PRNA 2XTRA 1MM5A 1ORMA 4GCPA 1ZHYA 4FT6A 1BH3A 4UB8O 3UU2A 4AFKA 1Q9GA 4FZMA 2XTQA 3AAAA 3HW9A 4K3CA 4AYID 7PRNA 2W81C 4AKMA 5DL5A 2R89A 3POQA 5KAIO 3AA1B 5GV0A 1PHOA 3NSGA 4C4VB 2GE4A 3LK3B 1HXXA 2MNHA 3POXA 3WI4A 2XE5A 3PF1A 2ERVA 2M07A 3AA7B 3QRAA 4FOZA 4FRTA 4RL9A 3BS0A 4N74A 3NJTA 4E1TA 5PRNA 1BXWA 2X9KA 3G7GA 2KC0A 4KRAA 3T24A 3WU2O 4FUVA 4LSEA 5TISO 2IWVA 3A0BO 4U9CA 4FZLA 3PGSA 3LK41 4G76A 2XMXA 5GTIO 5T5FA 3WI5A 2Y7SA 1GFOA 1GFQA 2LFUA 4N58A 3DWNA 3DA3A 4RLCA 3RBHA 5G3AA 1YS5A 2ZFGA 3QRCA 1OPFA 3LK2B 1IZNB 2OMFA 2AXTO 2Y0LA 3AA7A 3PRNA 4O3WA 3K19A 5D5DA 4AZLA 4BUMX 4GHBA 2KDYA 2F1TA 3AA6B 4O3YA 4RJXA 3FYXA 4UB6O 5AFUL 5DL7A 5G39A 4G75A 2F1CX 2R4PA 4LSHA 4O4XA 4PJ0O 4FQEA 2R4OA 4GCQA 5GTHO 2FGRA 2X27X 4CTDA 2WJQA 2KZ7B 2K4TA 1ZHWA 3T0SA 3VE1A 3VZUX 5JDPA 1G90A 2XE2A 4FMSA 2Y0HA 2KXPB 4N59A 3SYSA 4F4BA 3SY9A 2ZLDA 3HOEA 1E54A 1QJ8A 1QJPA 2MHLA 5FVNA 1ZHTA 3AA0B 1T1LA 3GP6A 4RJWA 4PUXA 3AAEB 2K0LA 2W80C 3AA6A 1GFNA 4FRXA 1HXTA 3JCUO 3VY9X 4AYNA 4AUIA 3T20A 3PQUA 3AA1A 3C5OA 4FZNA 4IL6O 4C4VA 2M06A 3LK42 3LK3A 2JQYA 4AKRB 4AYMC 2XE1A 4C69X 4XNKA 2YPVA 2R4NA 4C00A 4K3BA 5G38A 4FSPA 3PQSA 5B5EO 2R8AA 2ODJA 4D65A 5G26A 4XNLA 4JCHA 1MM4A 1ZHXA 5E79O 3SZDA 3BRZA 1GFPA 3DA4A 1THQA 3SY7A 1ZHZA 3KZIO 4E1SA 3VZWX 2N2MA 1GFMA 2J1NA 4D64A 1S5LO 1Q9FA 2PORA 2Y2XA 3A2SX
chains in the Genus database with same CATH topology
1P4TA 5IYUA 2YNKA 1H6S1 1HXUA 3KVDD 3O0EA 4FSOA 1PRNA 3LK2A 1IZNA 4JFBA 4KR4A 4QQ1A 3PORA 2PRNA 1OSMA 3VY8X 3UPGA 4AYEC 2O4VA 3SYBA 2LHFA 3HWBA 2F1VA 4Z3TA 5DL8A 5ADXK 3TZGA 4LSIA 3SZVA 4RLBA 2QTKA 2KZ7A 4O49A 2XG6A 2J4UP 5ADXL 3V8UA 1QJ9A 3EMNX 4D5UA 6PRNA 1BT9A 2KXPA 3AAAB 3UAQA 4O3XB 3VZTX 4B61A 2FGQX 2JMMA 3JTYA 2XE3A 4GF4A 4AYDC 4O3ZA 3AA0A 4KR8A 2N2LA 3AAEA 5DL6A 5AFUK 1MPFA 3POUA 4FESA 4O4UA 2Y0KA 3HOLA 4LSFA 5EE2A 4AKRA 8PRNA 4GCSA 3VE2A 2XTRA 1MM5A 1ORMA 4GCPA 1ZHYA 4FT6A 1BH3A 3UU2A 4AFKA 1Q9GA 4FZMA 2XTQA 3AAAA 3HW9A 4AYID 7PRNA 2W81C 4AKMA 5DL5A 3POQA 5GV0A 3AA1B 1PHOA 3NSGA 2GE4A 3LK3B 1HXXA 2MNHA 3POXA 3WI4A 2XE5A 4FOZA 2ERVA 2M07A 3AA7B 3QRAA 4FRTA 4RL9A 4E1TA 5PRNA 1BXWA 3G7GA 2KC0A 4KRAA 3T24A 4FUVA 4LSEA 4U9CA 4FZLA 3LK41 4G76A 2XMXA 5T5FA 3WI5A 2Y7SA 1GFOA 1GFQA 2LFUA 4N58A 4RLCA 3DA3A 3RBHA 1YS5A 2ZFGA 3QRCA 1OPFA 3LK2B 1IZNB 2OMFA 2Y0LA 3AA7A 3PRNA 4O3WA 5D5DA 3K19A 5DL7A 4AZLA 4BUMX 4GHBA 2KDYA 2F1TA 3AA6B 4O3YA 4RJXA 3FYXA 5AFUL 4G75A 4O4XA 4LSHA 4GCQA 2FGRA 2X27X 2KZ7B 2K4TA 1ZHWA 3T0SA 3VE1A 3VZUX 5JDPA 1G90A 2XE2A 4FMSA 2Y0HA 2KXPB 4N59A 3SYSA 4F4BA 3SY9A 2ZLDA 3HOEA 1E54A 1QJ8A 1QJPA 2MHLA 5FVNA 1ZHTA 3AA0B 3GP6A 4RJWA 4PUXA 3AAEB 2K0LA 2W80C 3AA6A 1GFNA 4FRXA 1HXTA 3VY9X 4AYNA 4AUIA 3T20A 3PQUA 3AA1A 3C5OA 4FZNA 2M06A 3LK42 3LK3A 4AKRB 4AYMC 4C69X 2XE1A 4XNKA 2YPVA 4FSPA 3PQSA 2ODJA 4D65A 5G26A 4XNLA 4JCHA 1MM4A 1ZHXA 3SZDA 1GFPA 3DA4A 1THQA 3SY7A 1ZHZA 4E1SA 3VZWX 2N2MA 1GFMA 2J1NA 4D64A 1Q9FA 2PORA 2Y2XA 3A2SX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B61 A;  5D5D A;  3RBH A;  5IYU A;  4AFK A;  4XNL A;  4XNK A;  4AZL A; 
#chains in the Genus database with same CATH topology
 1P4T A;  5KAF O;  2R4L A;  3A0H O;  5IYU A;  2YNK A;  1H6S 1;  1HXU A;  3KVD D;  3O0E A;  4FSO A;  1PRN A;  3LK2 A;  1IZN A;  4JFB A;  4KR4 A;  4QQ1 A;  2WVP A;  5H2F O;  3POR A;  2PRN A;  1OSM A;  3DWO X;  3VY8 X;  2IWW A;  3UPG A;  4N75 A;  4AYE C;  2O4V A;  3SYB A;  2LHF A;  3HWB A;  2F1V A;  4Z3T A;  5DL8 A;  5ADX K;  3TZG A;  4LSI A;  4PR7 A;  3SZV A;  4RLB A;  2QTK A;  2KZ7 A;  4O49 A;  3BRY A;  2R88 A;  2XG6 A;  2J4U P;  5ADX L;  3V8U A;  1QJ9 A;  3EMN X;  4D5U A;  6PRN A;  1BT9 A;  2KXP A;  3AAA B;  3DZM A;  3UAQ A;  4O3X B;  3VZT X;  4B61 A;  2FGQ X;  2JMM A;  3JTY A;  2XE3 A;  4GF4 A;  4AYD C;  4O3Z A;  3AA0 A;  4KR8 A;  5B66 O;  2N2L A;  3AAE A;  5DL6 A;  5AFU K;  1MPF A;  1T16 A;  3POU A;  4FES A;  2WJR A;  3PGU A;  4O4U A;  2Y0K A;  3HOL A;  3PGR A;  4LSF A;  5EE2 A;  4AKR A;  4GCS A;  3VE2 A;  8PRN A;  2XTR A;  1MM5 A;  1ORM A;  4GCP A;  1ZHY A;  4FT6 A;  1BH3 A;  4UB8 O;  3UU2 A;  4AFK A;  1Q9G A;  4FZM A;  2XTQ A;  3AAA A;  3HW9 A;  4K3C A;  4AYI D;  7PRN A;  2W81 C;  4AKM A;  5DL5 A;  2R89 A;  3POQ A;  5KAI O;  3AA1 B;  5GV0 A;  1PHO A;  3NSG A;  4C4V B;  2GE4 A;  3LK3 B;  1HXX A;  2MNH A;  3POX A;  3WI4 A;  2XE5 A;  3PF1 A;  2ERV A;  2M07 A;  3AA7 B;  3QRA A;  4FOZ A;  4FRT A;  4RL9 A;  3BS0 A;  4N74 A;  3NJT A;  4E1T A;  5PRN A;  1BXW A;  2X9K A;  3G7G A;  2KC0 A;  4KRA A;  3T24 A;  3WU2 O;  4FUV A;  4LSE A;  5TIS O;  2IWV A;  3A0B O;  4U9C A;  4FZL A;  3PGS A;  3LK4 1;  4G76 A;  2XMX A;  5GTI O;  5T5F A;  3WI5 A;  2Y7S A;  1GFO A;  1GFQ A;  2LFU A;  4N58 A;  3DWN A;  3DA3 A;  4RLC A;  3RBH A;  5G3A A;  1YS5 A;  2ZFG A;  3QRC A;  1OPF A;  3LK2 B;  1IZN B;  2OMF A;  2AXT O;  2Y0L A;  3AA7 A;  3PRN A;  4O3W A;  3K19 A;  5D5D A;  4AZL A;  4BUM X;  4GHB A;  2KDY A;  2F1T A;  3AA6 B;  4O3Y A;  4RJX A;  3FYX A;  4UB6 O;  5AFU L;  5DL7 A;  5G39 A;  4G75 A;  2F1C X;  2R4P A;  4LSH A;  4O4X A;  4PJ0 O;  4FQE A;  2R4O A;  4GCQ A;  5GTH O;  2FGR A;  2X27 X;  4CTD A;  2WJQ A;  2KZ7 B;  2K4T A;  1ZHW A;  3T0S A;  3VE1 A;  3VZU X;  5JDP A;  1G90 A;  2XE2 A;  4FMS A;  2Y0H A;  2KXP B;  4N59 A;  3SYS A;  4F4B A;  3SY9 A;  2ZLD A;  3HOE A;  1E54 A;  1QJ8 A;  1QJP A;  2MHL A;  5FVN A;  1ZHT A;  3AA0 B;  1T1L A;  3GP6 A;  4RJW A;  4PUX A;  3AAE B;  2K0L A;  2W80 C;  3AA6 A;  1GFN A;  4FRX A;  1HXT A;  3JCU O;  3VY9 X;  4AYN A;  4AUI A;  3T20 A;  3PQU A;  3AA1 A;  3C5O A;  4FZN A;  4IL6 O;  4C4V A;  2M06 A;  3LK4 2;  3LK3 A;  2JQY A;  4AKR B;  4AYM C;  2XE1 A;  4C69 X;  4XNK A;  2YPV A;  2R4N A;  4C00 A;  4K3B A;  5G38 A;  4FSP A;  3PQS A;  5B5E O;  2R8A A;  2ODJ A;  4D65 A;  5G26 A;  4XNL A;  4JCH A;  1MM4 A;  1ZHX A;  5E79 O;  3SZD A;  3BRZ A;  1GFP A;  3DA4 A;  1THQ A;  3SY7 A;  1ZHZ A;  3KZI O;  4E1S A;  3VZW X;  2N2M A;  1GFM A;  2J1N A;  4D64 A;  1S5L O;  1Q9F A;  2POR A;  2Y2X A;  3A2S X; 
#chains in the Genus database with same CATH homology
 1P4T A;  5IYU A;  2YNK A;  1H6S 1;  1HXU A;  3KVD D;  3O0E A;  4FSO A;  1PRN A;  3LK2 A;  1IZN A;  4JFB A;  4KR4 A;  4QQ1 A;  3POR A;  2PRN A;  1OSM A;  3VY8 X;  3UPG A;  4AYE C;  2O4V A;  3SYB A;  2LHF A;  3HWB A;  2F1V A;  4Z3T A;  5DL8 A;  5ADX K;  3TZG A;  4LSI A;  3SZV A;  4RLB A;  2QTK A;  2KZ7 A;  4O49 A;  2XG6 A;  2J4U P;  5ADX L;  3V8U A;  1QJ9 A;  3EMN X;  4D5U A;  6PRN A;  1BT9 A;  2KXP A;  3AAA B;  3UAQ A;  4O3X B;  3VZT X;  4B61 A;  2FGQ X;  2JMM A;  3JTY A;  2XE3 A;  4GF4 A;  4AYD C;  4O3Z A;  3AA0 A;  4KR8 A;  2N2L A;  3AAE A;  5DL6 A;  5AFU K;  1MPF A;  3POU A;  4FES A;  4O4U A;  2Y0K A;  3HOL A;  4LSF A;  5EE2 A;  4AKR A;  8PRN A;  4GCS A;  3VE2 A;  2XTR A;  1MM5 A;  1ORM A;  4GCP A;  1ZHY A;  4FT6 A;  1BH3 A;  3UU2 A;  4AFK A;  1Q9G A;  4FZM A;  2XTQ A;  3AAA A;  3HW9 A;  4AYI D;  7PRN A;  2W81 C;  4AKM A;  5DL5 A;  3POQ A;  5GV0 A;  3AA1 B;  1PHO A;  3NSG A;  2GE4 A;  3LK3 B;  1HXX A;  2MNH A;  3POX A;  3WI4 A;  2XE5 A;  4FOZ A;  2ERV A;  2M07 A;  3AA7 B;  3QRA A;  4FRT A;  4RL9 A;  4E1T A;  5PRN A;  1BXW A;  3G7G A;  2KC0 A;  4KRA A;  3T24 A;  4FUV A;  4LSE A;  4U9C A;  4FZL A;  3LK4 1;  4G76 A;  2XMX A;  5T5F A;  3WI5 A;  2Y7S A;  1GFO A;  1GFQ A;  2LFU A;  4N58 A;  4RLC A;  3DA3 A;  3RBH A;  1YS5 A;  2ZFG A;  3QRC A;  1OPF A;  3LK2 B;  1IZN B;  2OMF A;  2Y0L A;  3AA7 A;  3PRN A;  4O3W A;  5D5D A;  3K19 A;  5DL7 A;  4AZL A;  4BUM X;  4GHB A;  2KDY A;  2F1T A;  3AA6 B;  4O3Y A;  4RJX A;  3FYX A;  5AFU L;  4G75 A;  4O4X A;  4LSH A;  4GCQ A;  2FGR A;  2X27 X;  2KZ7 B;  2K4T A;  1ZHW A;  3T0S A;  3VE1 A;  3VZU X;  5JDP A;  1G90 A;  2XE2 A;  4FMS A;  2Y0H A;  2KXP B;  4N59 A;  3SYS A;  4F4B A;  3SY9 A;  2ZLD A;  3HOE A;  1E54 A;  1QJ8 A;  1QJP A;  2MHL A;  5FVN A;  1ZHT A;  3AA0 B;  3GP6 A;  4RJW A;  4PUX A;  3AAE B;  2K0L A;  2W80 C;  3AA6 A;  1GFN A;  4FRX A;  1HXT A;  3VY9 X;  4AYN A;  4AUI A;  3T20 A;  3PQU A;  3AA1 A;  3C5O A;  4FZN A;  2M06 A;  3LK4 2;  3LK3 A;  4AKR B;  4AYM C;  4C69 X;  2XE1 A;  4XNK A;  2YPV A;  4FSP A;  3PQS A;  2ODJ A;  4D65 A;  5G26 A;  4XNL A;  4JCH A;  1MM4 A;  1ZHX A;  3SZD A;  1GFP A;  3DA4 A;  1THQ A;  3SY7 A;  1ZHZ A;  4E1S A;  3VZW X;  2N2M A;  1GFM A;  2J1N A;  4D64 A;  1Q9F A;  2POR A;  2Y2X A;  3A2S X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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