4B61A

In meso structure of alginate transporter, alge, from pseudomoas aeruginosa, pao1. crystal form 3.
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
452
structure length
429
Chain Sequence
b'PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
molecule tags Membrane protein
total genus 126
structure length 429
sequence length 452
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4b61A00
4XNLA 4XNKA 4AFKA 3RBHA 4B61A 5D5DA 5IYUA 4AZLA
chains in the Genus database with same CATH superfamily
4FZMA 1Q9GA 2N2MA 2XE3A 3RBHA 4FMSA 2N2LA 3SZDA 4E1TA 3T20A 2F1VA 4FZNA 2KXPA 2Y2XA 3PRNA 4D65A 5B66O 1E54A 1GFOA 2JMMA 5E79O 6PRNA 3PORA 3PQSA 5G26A 2X27X 3POUA 3QRAA 1T1LA 4K3CA 1GFNA 4E1SA 5IYUA 5GTIO 2JQYA 3AA0B 3T24A 2LFUA 3AAAB 3QRCA 4AKMA 5DL8A 1ORMA 2FGQX 1HXTA 2KZ7B 3DWNA 4FSOA 3AAAA 1ZHYA 3AAEB 1H6S1 2K4TA 4AYID 1OPFA 5D5DA 3LK41 3PF1A 3DA4A 2AXTO 3T0SA 3AAEA 4Z3TA 3AA1B 2R88A 4F4BA 5TISO 1QJPA 4KR4A 4O3WA 5B5EO 2QTKA 4GCQA 2F1TA 3GP6A 2XE2A 4BUMX 3WU2O 3SZVA 3DA3A 4O3YA 4C00A 4FRTA 5KAFO 4AUIA 2R8AA 3UPGA 2KC0A 5G3AA 4GF4A 4IL6O 2R4NA 4AFKA 2KXPB 3WI5A 3HWBA 2J1NA 4FT6A 4O49A 4U9CA 5GTHO 3PQUA 1HXXA 3SYBA 2ZFGA 4AYEC 4AZLA 4G76A 3LK2A 3SYSA 2K0LA 2XE5A 1YS5A 2XG6A 3A0HO 1BT9A 2Y0KA 2IWVA 3VE2A 3PGSA 4GCSA 2R89A 2XTQA 5FVNA 4JFBA 3VE1A 4N58A 2M06A 1IZNA 3HOEA 4N59A 2Y7SA 1PHOA 2GE4A 2ERVA 4UB8O 2MHLA 2WJQA 3PGRA 5AFUK 1T16A 2R4PA 2Y0LA 3POXA 4FZLA 4RLCA 5ADXK 1P4TA 1GFMA 3UU2A 4LSFA 5G39A 3KVDD 3PGUA 3AA6B 4O4XA 1OSMA 1THQA 3NSGA 1Q9FA 2J4UP 3C5OA 3AA6A 4KR8A 2ODJA 4XNLA 1QJ8A 1HXUA 3A0BO 1GFPA 3BRYA 1ZHZA 2KDYA 4O3XB 2ZLDA 1BH3A 4D5UA 2MNHA 4RJXA 4N74A 2LHFA 4AYDC 3SY7A 1GFQA 4FUVA 3POQA 3LK3B 5DL6A 3LK2B 3LK42 2XMXA 4N75A 1ZHXA 3HOLA 3LK3A 2M07A 2W81C 3A2SX 5AFUL 8PRNA 4GCPA 4K3BA 3AA7A 2O4VA 3DWOX 2W80C 2WJRA 5ADXL 2PORA 1IZNB 5KAIO 4C4VB 4FSPA 3G7GA 3FYXA 5DL5A 4GHBA 3V8UA 4C4VA 4O3ZA 3BRZA 4AYNA 4D64A 4JCHA 4LSEA 2R4LA 4RLBA 1S5LO 4AKRB 3UAQA 3VZTX 3WI4A 4C69X 3O0EA 2F1CX 2X9KA 4AYMC 4FOZA 1G90A 3EMNX 4PR7A 2WVPA 4AKRA 1PRNA 3HW9A 4LSHA 3K19A 5PRNA 3VZUX 4XNKA 4FESA 7PRNA 2Y0HA 1BXWA 2R4OA 3NJTA 4CTDA 3SY9A 1MM4A 5EE2A 3VY8X 3JCUO 1ZHWA 2XE1A 3DZMA 1QJ9A 4KRAA 3AA7B 1MPFA 2XTRA 4O4UA 3VZWX 4FQEA 3TZGA 2PRNA 3AA0A 5DL7A 4G75A 2OMFA 4RJWA 1MM5A 5JDPA 2YPVA 2KZ7A 3KZIO 2IWWA 3JTYA 4UB6O 2FGRA 4LSIA 5GV0A 2YNKA 4PJ0O 3BS0A 3AA1A 4PUXA 4FRXA 5T5FA 4QQ1A 5G38A 3VY9X 5H2FO 1ZHTA 4RL9A 4B61A
chains in the Genus database with same CATH topology
4FZMA 1Q9GA 2N2MA 2XE3A 3RBHA 4FMSA 2N2LA 3SZDA 4E1TA 3T20A 2F1VA 4FZNA 2KXPA 2Y2XA 3PRNA 4D65A 1E54A 1GFOA 2JMMA 6PRNA 3PORA 3PQSA 5G26A 2X27X 3POUA 3QRAA 1GFNA 4E1SA 5IYUA 3T24A 3AA0B 2LFUA 3AAAB 3QRCA 4AKMA 5DL8A 1ORMA 2FGQX 1HXTA 2KZ7B 4FSOA 3SYBA 3AAAA 1ZHYA 3AAEB 1H6S1 2K4TA 4AYID 1OPFA 5D5DA 3LK41 3DA4A 3T0SA 3AAEA 4Z3TA 3AA1B 4F4BA 1QJPA 4KR4A 4O3WA 2QTKA 4GCQA 2F1TA 3GP6A 2XE2A 4BUMX 3SZVA 3DA3A 4O3YA 4FRTA 4AUIA 3UPGA 2KC0A 4AFKA 4GF4A 2KXPB 3WI5A 3HWBA 2J1NA 4FT6A 4O49A 4U9CA 3PQUA 1HXXA 4AYEC 2ZFGA 4AZLA 4G76A 3LK2A 3SYSA 2K0LA 2XE5A 1YS5A 2XG6A 1BT9A 2Y0KA 3VE2A 4GCSA 2XTQA 5FVNA 4JFBA 4N58A 2M06A 1IZNA 3HOEA 4N59A 2Y7SA 1PHOA 2GE4A 2ERVA 2MHLA 5AFUK 2Y0LA 3POXA 4FZLA 4RLCA 5ADXK 1P4TA 1GFMA 3UU2A 4LSFA 3KVDD 3AA6B 4O4XA 1OSMA 1THQA 3NSGA 1Q9FA 2J4UP 3C5OA 3AA6A 4KR8A 2ODJA 4XNLA 1QJ8A 1HXUA 3VE1A 1GFPA 3VY9X 1ZHZA 2KDYA 4O3XB 2ZLDA 1BH3A 4D5UA 2MNHA 4RJXA 2LHFA 4AYDC 3SY7A 1GFQA 4FUVA 3POQA 3LK3B 5DL6A 3LK2B 3LK42 2XMXA 1ZHXA 3HOLA 3LK3A 2M07A 2W81C 3A2SX 5AFUL 8PRNA 4GCPA 3AA7A 2O4VA 5ADXL 2W80C 2PORA 1IZNB 4FSPA 3G7GA 3FYXA 5DL5A 4GHBA 3V8UA 4O3ZA 4AYNA 4D64A 4JCHA 4LSEA 4RLBA 4C69X 4AKRB 3UAQA 3VZTX 3WI4A 3O0EA 4AYMC 4FOZA 1G90A 3EMNX 4AKRA 1PRNA 3HW9A 4LSHA 3K19A 5PRNA 3VZUX 4XNKA 4FESA 7PRNA 2Y0HA 1BXWA 3SY9A 1MM4A 5EE2A 3VY8X 1ZHWA 2XE1A 1QJ9A 4KRAA 3AA7B 1MPFA 2XTRA 4O4UA 3VZWX 3TZGA 2PRNA 3AA0A 5DL7A 4G75A 2OMFA 4RJWA 1MM5A 5JDPA 2YPVA 2KZ7A 3JTYA 2FGRA 4LSIA 5GV0A 2YNKA 3AA1A 4PUXA 4FRXA 5T5FA 4QQ1A 1ZHTA 4RL9A 4B61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNL A;  4XNK A;  4AFK A;  3RBH A;  4B61 A;  5D5D A;  5IYU A;  4AZL A; 
#chains in the Genus database with same CATH topology
 4FZM A;  1Q9G A;  2N2M A;  2XE3 A;  3RBH A;  4FMS A;  2N2L A;  3SZD A;  4E1T A;  3T20 A;  2F1V A;  4FZN A;  2KXP A;  2Y2X A;  3PRN A;  4D65 A;  5B66 O;  1E54 A;  1GFO A;  2JMM A;  5E79 O;  6PRN A;  3POR A;  3PQS A;  5G26 A;  2X27 X;  3POU A;  3QRA A;  1T1L A;  4K3C A;  1GFN A;  4E1S A;  5IYU A;  5GTI O;  2JQY A;  3AA0 B;  3T24 A;  2LFU A;  3AAA B;  3QRC A;  4AKM A;  5DL8 A;  1ORM A;  2FGQ X;  1HXT A;  2KZ7 B;  3DWN A;  4FSO A;  3AAA A;  1ZHY A;  3AAE B;  1H6S 1;  2K4T A;  4AYI D;  1OPF A;  5D5D A;  3LK4 1;  3PF1 A;  3DA4 A;  2AXT O;  3T0S A;  3AAE A;  4Z3T A;  3AA1 B;  2R88 A;  4F4B A;  5TIS O;  1QJP A;  4KR4 A;  4O3W A;  5B5E O;  2QTK A;  4GCQ A;  2F1T A;  3GP6 A;  2XE2 A;  4BUM X;  3WU2 O;  3SZV A;  3DA3 A;  4O3Y A;  4C00 A;  4FRT A;  5KAF O;  4AUI A;  2R8A A;  3UPG A;  2KC0 A;  5G3A A;  4GF4 A;  4IL6 O;  2R4N A;  4AFK A;  2KXP B;  3WI5 A;  3HWB A;  2J1N A;  4FT6 A;  4O49 A;  4U9C A;  5GTH O;  3PQU A;  1HXX A;  3SYB A;  2ZFG A;  4AYE C;  4AZL A;  4G76 A;  3LK2 A;  3SYS A;  2K0L A;  2XE5 A;  1YS5 A;  2XG6 A;  3A0H O;  1BT9 A;  2Y0K A;  2IWV A;  3VE2 A;  3PGS A;  4GCS A;  2R89 A;  2XTQ A;  5FVN A;  4JFB A;  3VE1 A;  4N58 A;  2M06 A;  1IZN A;  3HOE A;  4N59 A;  2Y7S A;  1PHO A;  2GE4 A;  2ERV A;  4UB8 O;  2MHL A;  2WJQ A;  3PGR A;  5AFU K;  1T16 A;  2R4P A;  2Y0L A;  3POX A;  4FZL A;  4RLC A;  5ADX K;  1P4T A;  1GFM A;  3UU2 A;  4LSF A;  5G39 A;  3KVD D;  3PGU A;  3AA6 B;  4O4X A;  1OSM A;  1THQ A;  3NSG A;  1Q9F A;  2J4U P;  3C5O A;  3AA6 A;  4KR8 A;  2ODJ A;  4XNL A;  1QJ8 A;  1HXU A;  3A0B O;  1GFP A;  3BRY A;  1ZHZ A;  2KDY A;  4O3X B;  2ZLD A;  1BH3 A;  4D5U A;  2MNH A;  4RJX A;  4N74 A;  2LHF A;  4AYD C;  3SY7 A;  1GFQ A;  4FUV A;  3POQ A;  3LK3 B;  5DL6 A;  3LK2 B;  3LK4 2;  2XMX A;  4N75 A;  1ZHX A;  3HOL A;  3LK3 A;  2M07 A;  2W81 C;  3A2S X;  5AFU L;  8PRN A;  4GCP A;  4K3B A;  3AA7 A;  2O4V A;  3DWO X;  2W80 C;  2WJR A;  5ADX L;  2POR A;  1IZN B;  5KAI O;  4C4V B;  4FSP A;  3G7G A;  3FYX A;  5DL5 A;  4GHB A;  3V8U A;  4C4V A;  4O3Z A;  3BRZ A;  4AYN A;  4D64 A;  4JCH A;  4LSE A;  2R4L A;  4RLB A;  1S5L O;  4AKR B;  3UAQ A;  3VZT X;  3WI4 A;  4C69 X;  3O0E A;  2F1C X;  2X9K A;  4AYM C;  4FOZ A;  1G90 A;  3EMN X;  4PR7 A;  2WVP A;  4AKR A;  1PRN A;  3HW9 A;  4LSH A;  3K19 A;  5PRN A;  3VZU X;  4XNK A;  4FES A;  7PRN A;  2Y0H A;  1BXW A;  2R4O A;  3NJT A;  4CTD A;  3SY9 A;  1MM4 A;  5EE2 A;  3VY8 X;  3JCU O;  1ZHW A;  2XE1 A;  3DZM A;  1QJ9 A;  4KRA A;  3AA7 B;  1MPF A;  2XTR A;  4O4U A;  3VZW X;  4FQE A;  3TZG A;  2PRN A;  3AA0 A;  5DL7 A;  4G75 A;  2OMF A;  4RJW A;  1MM5 A;  5JDP A;  2YPV A;  2KZ7 A;  3KZI O;  2IWW A;  3JTY A;  4UB6 O;  2FGR A;  4LSI A;  5GV0 A;  2YNK A;  4PJ0 O;  3BS0 A;  3AA1 A;  4PUX A;  4FRX A;  5T5F A;  4QQ1 A;  5G38 A;  3VY9 X;  5H2F O;  1ZHT A;  4RL9 A;  4B61 A; 
#chains in the Genus database with same CATH homology
 4FZM A;  1Q9G A;  2N2M A;  2XE3 A;  3RBH A;  4FMS A;  2N2L A;  3SZD A;  4E1T A;  3T20 A;  2F1V A;  4FZN A;  2KXP A;  2Y2X A;  3PRN A;  4D65 A;  1E54 A;  1GFO A;  2JMM A;  6PRN A;  3POR A;  3PQS A;  5G26 A;  2X27 X;  3POU A;  3QRA A;  1GFN A;  4E1S A;  5IYU A;  3T24 A;  3AA0 B;  2LFU A;  3AAA B;  3QRC A;  4AKM A;  5DL8 A;  1ORM A;  2FGQ X;  1HXT A;  2KZ7 B;  4FSO A;  3SYB A;  3AAA A;  1ZHY A;  3AAE B;  1H6S 1;  2K4T A;  4AYI D;  1OPF A;  5D5D A;  3LK4 1;  3DA4 A;  3T0S A;  3AAE A;  4Z3T A;  3AA1 B;  4F4B A;  1QJP A;  4KR4 A;  4O3W A;  2QTK A;  4GCQ A;  2F1T A;  3GP6 A;  2XE2 A;  4BUM X;  3SZV A;  3DA3 A;  4O3Y A;  4FRT A;  4AUI A;  3UPG A;  2KC0 A;  4AFK A;  4GF4 A;  2KXP B;  3WI5 A;  3HWB A;  2J1N A;  4FT6 A;  4O49 A;  4U9C A;  3PQU A;  1HXX A;  4AYE C;  2ZFG A;  4AZL A;  4G76 A;  3LK2 A;  3SYS A;  2K0L A;  2XE5 A;  1YS5 A;  2XG6 A;  1BT9 A;  2Y0K A;  3VE2 A;  4GCS A;  2XTQ A;  5FVN A;  4JFB A;  4N58 A;  2M06 A;  1IZN A;  3HOE A;  4N59 A;  2Y7S A;  1PHO A;  2GE4 A;  2ERV A;  2MHL A;  5AFU K;  2Y0L A;  3POX A;  4FZL A;  4RLC A;  5ADX K;  1P4T A;  1GFM A;  3UU2 A;  4LSF A;  3KVD D;  3AA6 B;  4O4X A;  1OSM A;  1THQ A;  3NSG A;  1Q9F A;  2J4U P;  3C5O A;  3AA6 A;  4KR8 A;  2ODJ A;  4XNL A;  1QJ8 A;  1HXU A;  3VE1 A;  1GFP A;  3VY9 X;  1ZHZ A;  2KDY A;  4O3X B;  2ZLD A;  1BH3 A;  4D5U A;  2MNH A;  4RJX A;  2LHF A;  4AYD C;  3SY7 A;  1GFQ A;  4FUV A;  3POQ A;  3LK3 B;  5DL6 A;  3LK2 B;  3LK4 2;  2XMX A;  1ZHX A;  3HOL A;  3LK3 A;  2M07 A;  2W81 C;  3A2S X;  5AFU L;  8PRN A;  4GCP A;  3AA7 A;  2O4V A;  5ADX L;  2W80 C;  2POR A;  1IZN B;  4FSP A;  3G7G A;  3FYX A;  5DL5 A;  4GHB A;  3V8U A;  4O3Z A;  4AYN A;  4D64 A;  4JCH A;  4LSE A;  4RLB A;  4C69 X;  4AKR B;  3UAQ A;  3VZT X;  3WI4 A;  3O0E A;  4AYM C;  4FOZ A;  1G90 A;  3EMN X;  4AKR A;  1PRN A;  3HW9 A;  4LSH A;  3K19 A;  5PRN A;  3VZU X;  4XNK A;  4FES A;  7PRN A;  2Y0H A;  1BXW A;  3SY9 A;  1MM4 A;  5EE2 A;  3VY8 X;  1ZHW A;  2XE1 A;  1QJ9 A;  4KRA A;  3AA7 B;  1MPF A;  2XTR A;  4O4U A;  3VZW X;  3TZG A;  2PRN A;  3AA0 A;  5DL7 A;  4G75 A;  2OMF A;  4RJW A;  1MM5 A;  5JDP A;  2YPV A;  2KZ7 A;  3JTY A;  2FGR A;  4LSI A;  5GV0 A;  2YNK A;  3AA1 A;  4PUX A;  4FRX A;  5T5F A;  4QQ1 A;  1ZHT A;  4RL9 A;  4B61 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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