4B61A

In meso structure of alginate transporter, alge, from pseudomoas aeruginosa, pao1. crystal form 3.
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
452
structure length
429
Chain Sequence
PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
total genus 126
structure length 429
sequence length 452
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4b61A00
3RBHA 4XNLA 5IYUA 4AZLA 4XNKA 5D5DA 4B61A 4AFKA
chains in the Genus database with same CATH superfamily
4RLCA 3DWNA 4U9CA 4AUIA 4FRXA 5G38A 2OMFA 2XTRA 4AYNA 5D5DA 3VZWX 2R88A 1OSMA 3PGSA 4LSFA 4F4BA 2R4PA 2K0LA 3PRNA 3WU2O 2O4VA 4C4VB 3HWBA 3SY7A 5FVNA 3AAEA 4FUVA 2W81C 3PGUA 4N75A 3DZMA 3POUA 3SZDA 3GP6A 1IZNA 1PRNA 4FSPA 1PHOA 3KZIO 4FZLA 2R89A 3VY8X 2KC0A 2MNHA 5GTIO 4D65A 4N74A 5JDPA 2KXPA 2Y7SA 3AA0A 3QRAA 4PJ0O 5E79O 1HXXA 3WI4A 5AFUL 4JFBA 4D5UA 3SY9A 2YNKA 2KZ7B 4PR7A 5GV0A 3PQUA 2K4TA 4GHBA 4KRAA 2ZLDA 3LK3B 3HOEA 3O0EA 2M07A 3A2SX 5AFUK 2R8AA 1ZHYA 1MM4A 2M06A 2XE3A 3A0BO 1QJ9A 2IWVA 4AKRB 2PRNA 2WJRA 3UPGA 5G26A 5PRNA 1GFNA 3QRCA 4PUXA 5B66O 3POXA 5EE2A 1ZHWA 3AAAA 2XG6A 3BS0A 2W80C 2WJQA 3AA7B 4IL6O 1BT9A 4RJXA 4FOZA 1G90A 4FT6A 4G75A 2XE2A 2LFUA 3AA1A 3JTYA 4N58A 2X9KA 2FGRA 1HXTA 4O3XB 2F1CX 4RJWA 3DWOX 3EMNX 1ZHZA 2X27X 4Z3TA 2Y0KA 4AYMC 4GCPA 2FGQX 2YPVA 3AAEB 5T5FA 2ERVA 2MHLA 2XMXA 4GCSA 5IYUA 4AZLA 3SYBA 1GFOA 4FZNA 4O49A 3WI5A 2QTKA 2AXTO 4JCHA 1MPFA 2JMMA 3AA6A 3NJTA 3AA0B 4QQ1A 2KDYA 1ORMA 4RL9A 3PF1A 4LSIA 4O4UA 3VE1A 4AYID 4FQEA 4D64A 3T20A 3LK2A 1QJ8A 2XE1A 3A0HO 3RBHA 5DL5A 2R4LA 3VY9X 4C4VA 5ADXL 1QJPA 5B5EO 4FZMA 3LK41 4O3YA 3NSGA 4BUMX 4E1SA 5ADXK 3AAAB 4G76A 3VZUX 4KR8A 2ZFGA 4O4XA 3VE2A 3UU2A 4UB6O 2WVPA 4GCQA 3SZVA 4C69X 5TISO 1S5LO 1HXUA 3AA1B 3KVDD 5DL8A 1T1LA 5DL6A 1E54A 4UB8O 2N2LA 4AKMA 2GE4A 1BXWA 4LSHA 4N59A 5GTHO 1Q9GA 5G39A 1IZNB 3DA3A 2Y0LA 1BH3A 3BRYA 3T0SA 5KAIO 2XE5A 3PORA 2LHFA 4FRTA 1H6S1 2KXPB 1GFQA 2XTQA 2PORA 5H2FO 2F1VA 3DA4A 4E1TA 1Q9FA 3AA6B 3AA7A 7PRNA 4K3BA 1YS5A 4O3WA 2Y2XA 2J1NA 3VZTX 1GFMA 2IWWA 5G3AA 8PRNA 4RLBA 3K19A 3FYXA 2Y0HA 3LK2B 2F1TA 2ODJA 3PQSA 4K3CA 3SYSA 4O3ZA 4C00A 3G7GA 4KR4A 3JCUO 4FSOA 2JQYA 3V8UA 1ZHXA 3C5OA 2R4NA 4AFKA 2J4UP 3POQA 2KZ7A 3LK42 3HOLA 4CTDA 4GF4A 4LSEA 3LK3A 4B61A 2R4OA 3BRZA 1MM5A 1THQA 1T16A 3UAQA 4AKRA 1GFPA 1ZHTA 3HW9A 1OPFA 4FMSA 4XNLA 3TZGA 3T24A 5KAFO 4AYDC 1P4TA 2N2MA 4XNKA 4AYEC 6PRNA 4FESA 3PGRA 5DL7A
chains in the Genus database with same CATH topology
4RLCA 4U9CA 4AUIA 4FRXA 2OMFA 2XTRA 4AYNA 5D5DA 3VZWX 1OSMA 4LSFA 4F4BA 2K0LA 3PRNA 2O4VA 3HWBA 3SY7A 5FVNA 3AAEA 4FUVA 2W81C 3POUA 3SZDA 3GP6A 1IZNA 1PRNA 4FSPA 1PHOA 4FZLA 3VY8X 2KC0A 2MNHA 4D65A 5JDPA 2KXPA 2Y7SA 3AA0A 3QRAA 3WI4A 5AFUL 1HXXA 4JFBA 4D5UA 3SY9A 2YNKA 2KZ7B 5GV0A 3PQUA 2K4TA 4GHBA 4KRAA 2ZLDA 3LK3B 3HOEA 3O0EA 2M07A 3A2SX 5AFUK 1ZHYA 1MM4A 2M06A 2XE3A 4AKRB 1QJ9A 2PRNA 3UPGA 5G26A 5PRNA 1GFNA 3QRCA 4PUXA 3POXA 5EE2A 1ZHWA 3AAAA 2XG6A 2W80C 3AA7B 1BT9A 4RJXA 4FOZA 1G90A 4FT6A 4G75A 2XE2A 2LFUA 3AA1A 3JTYA 4N58A 2FGRA 1HXTA 4O3XB 4RJWA 4Z3TA 3EMNX 1ZHZA 2X27X 2Y0KA 4AYMC 4GCPA 2FGQX 2YPVA 3AAEB 5T5FA 2ERVA 2MHLA 2XMXA 4GCSA 5IYUA 4AZLA 3SYBA 1GFOA 4FZNA 4O49A 3WI5A 2QTKA 4JCHA 1MPFA 2JMMA 3AA6A 3AA0B 4QQ1A 2KDYA 1ORMA 4RL9A 3VE1A 4LSIA 4O4UA 4AYID 4D64A 3T20A 3LK2A 1QJ8A 2XE1A 3RBHA 5DL5A 3VY9X 5ADXL 1QJPA 4FZMA 3LK41 4O3YA 3NSGA 4BUMX 4E1SA 5ADXK 3AAAB 4G76A 3VZUX 4KR8A 2ZFGA 4O4XA 3VE2A 3UU2A 4GCQA 3SZVA 4C69X 1HXUA 3AA1B 3KVDD 5DL8A 5DL6A 4AKMA 1E54A 2N2LA 2GE4A 1BXWA 4LSHA 4N59A 1Q9GA 1IZNB 3DA3A 2Y0LA 1BH3A 3T0SA 2XE5A 3PORA 2LHFA 4FRTA 1H6S1 2KXPB 1GFQA 2XTQA 2PORA 2F1VA 3DA4A 4E1TA 1Q9FA 3AA6B 3AA7A 7PRNA 1YS5A 4O3WA 2Y2XA 2J1NA 3VZTX 1GFMA 8PRNA 4RLBA 3K19A 3FYXA 2Y0HA 3LK2B 2F1TA 2ODJA 3PQSA 3SYSA 4O3ZA 3G7GA 4KR4A 4FSOA 3V8UA 1ZHXA 3C5OA 4AFKA 2J4UP 3POQA 2KZ7A 3LK42 3HOLA 4GF4A 4LSEA 3LK3A 4B61A 3UAQA 1MM5A 1THQA 4AKRA 1GFPA 1ZHTA 3HW9A 1OPFA 4FMSA 4XNLA 3TZGA 3T24A 4AYDC 1P4TA 2N2MA 4XNKA 4AYEC 6PRNA 4FESA 5DL7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RBH A;  4XNL A;  5IYU A;  4AZL A;  4XNK A;  5D5D A;  4B61 A;  4AFK A; 
#chains in the Genus database with same CATH topology
 4RLC A;  3DWN A;  4U9C A;  4AUI A;  4FRX A;  5G38 A;  2OMF A;  2XTR A;  4AYN A;  5D5D A;  3VZW X;  2R88 A;  1OSM A;  3PGS A;  4LSF A;  4F4B A;  2R4P A;  2K0L A;  3PRN A;  3WU2 O;  2O4V A;  4C4V B;  3HWB A;  3SY7 A;  5FVN A;  3AAE A;  4FUV A;  2W81 C;  3PGU A;  4N75 A;  3DZM A;  3POU A;  3SZD A;  3GP6 A;  1IZN A;  1PRN A;  4FSP A;  1PHO A;  3KZI O;  4FZL A;  2R89 A;  3VY8 X;  2KC0 A;  2MNH A;  5GTI O;  4D65 A;  4N74 A;  5JDP A;  2KXP A;  2Y7S A;  3AA0 A;  3QRA A;  4PJ0 O;  5E79 O;  1HXX A;  3WI4 A;  5AFU L;  4JFB A;  4D5U A;  3SY9 A;  2YNK A;  2KZ7 B;  4PR7 A;  5GV0 A;  3PQU A;  2K4T A;  4GHB A;  4KRA A;  2ZLD A;  3LK3 B;  3HOE A;  3O0E A;  2M07 A;  3A2S X;  5AFU K;  2R8A A;  1ZHY A;  1MM4 A;  2M06 A;  2XE3 A;  3A0B O;  1QJ9 A;  2IWV A;  4AKR B;  2PRN A;  2WJR A;  3UPG A;  5G26 A;  5PRN A;  1GFN A;  3QRC A;  4PUX A;  5B66 O;  3POX A;  5EE2 A;  1ZHW A;  3AAA A;  2XG6 A;  3BS0 A;  2W80 C;  2WJQ A;  3AA7 B;  4IL6 O;  1BT9 A;  4RJX A;  4FOZ A;  1G90 A;  4FT6 A;  4G75 A;  2XE2 A;  2LFU A;  3AA1 A;  3JTY A;  4N58 A;  2X9K A;  2FGR A;  1HXT A;  4O3X B;  2F1C X;  4RJW A;  3DWO X;  3EMN X;  1ZHZ A;  2X27 X;  4Z3T A;  2Y0K A;  4AYM C;  4GCP A;  2FGQ X;  2YPV A;  3AAE B;  5T5F A;  2ERV A;  2MHL A;  2XMX A;  4GCS A;  5IYU A;  4AZL A;  3SYB A;  1GFO A;  4FZN A;  4O49 A;  3WI5 A;  2QTK A;  2AXT O;  4JCH A;  1MPF A;  2JMM A;  3AA6 A;  3NJT A;  3AA0 B;  4QQ1 A;  2KDY A;  1ORM A;  4RL9 A;  3PF1 A;  4LSI A;  4O4U A;  3VE1 A;  4AYI D;  4FQE A;  4D64 A;  3T20 A;  3LK2 A;  1QJ8 A;  2XE1 A;  3A0H O;  3RBH A;  5DL5 A;  2R4L A;  3VY9 X;  4C4V A;  5ADX L;  1QJP A;  5B5E O;  4FZM A;  3LK4 1;  4O3Y A;  3NSG A;  4BUM X;  4E1S A;  5ADX K;  3AAA B;  4G76 A;  3VZU X;  4KR8 A;  2ZFG A;  4O4X A;  3VE2 A;  3UU2 A;  4UB6 O;  2WVP A;  4GCQ A;  3SZV A;  4C69 X;  5TIS O;  1S5L O;  1HXU A;  3AA1 B;  3KVD D;  5DL8 A;  1T1L A;  5DL6 A;  1E54 A;  4UB8 O;  2N2L A;  4AKM A;  2GE4 A;  1BXW A;  4LSH A;  4N59 A;  5GTH O;  1Q9G A;  5G39 A;  1IZN B;  3DA3 A;  2Y0L A;  1BH3 A;  3BRY A;  3T0S A;  5KAI O;  2XE5 A;  3POR A;  2LHF A;  4FRT A;  1H6S 1;  2KXP B;  1GFQ A;  2XTQ A;  2POR A;  5H2F O;  2F1V A;  3DA4 A;  4E1T A;  1Q9F A;  3AA6 B;  3AA7 A;  7PRN A;  4K3B A;  1YS5 A;  4O3W A;  2Y2X A;  2J1N A;  3VZT X;  1GFM A;  2IWW A;  5G3A A;  8PRN A;  4RLB A;  3K19 A;  3FYX A;  2Y0H A;  3LK2 B;  2F1T A;  2ODJ A;  3PQS A;  4K3C A;  3SYS A;  4O3Z A;  4C00 A;  3G7G A;  4KR4 A;  3JCU O;  4FSO A;  2JQY A;  3V8U A;  1ZHX A;  3C5O A;  2R4N A;  4AFK A;  2J4U P;  3POQ A;  2KZ7 A;  3LK4 2;  3HOL A;  4CTD A;  4GF4 A;  4LSE A;  3LK3 A;  4B61 A;  2R4O A;  3BRZ A;  1MM5 A;  1THQ A;  1T16 A;  3UAQ A;  4AKR A;  1GFP A;  1ZHT A;  3HW9 A;  1OPF A;  4FMS A;  4XNL A;  3TZG A;  3T24 A;  5KAF O;  4AYD C;  1P4T A;  2N2M A;  4XNK A;  4AYE C;  6PRN A;  4FES A;  3PGR A;  5DL7 A; 
#chains in the Genus database with same CATH homology
 4RLC A;  4U9C A;  4AUI A;  4FRX A;  2OMF A;  2XTR A;  4AYN A;  5D5D A;  3VZW X;  1OSM A;  4LSF A;  4F4B A;  2K0L A;  3PRN A;  2O4V A;  3HWB A;  3SY7 A;  5FVN A;  3AAE A;  4FUV A;  2W81 C;  3POU A;  3SZD A;  3GP6 A;  1IZN A;  1PRN A;  4FSP A;  1PHO A;  4FZL A;  3VY8 X;  2KC0 A;  2MNH A;  4D65 A;  5JDP A;  2KXP A;  2Y7S A;  3AA0 A;  3QRA A;  3WI4 A;  5AFU L;  1HXX A;  4JFB A;  4D5U A;  3SY9 A;  2YNK A;  2KZ7 B;  5GV0 A;  3PQU A;  2K4T A;  4GHB A;  4KRA A;  2ZLD A;  3LK3 B;  3HOE A;  3O0E A;  2M07 A;  3A2S X;  5AFU K;  1ZHY A;  1MM4 A;  2M06 A;  2XE3 A;  4AKR B;  1QJ9 A;  2PRN A;  3UPG A;  5G26 A;  5PRN A;  1GFN A;  3QRC A;  4PUX A;  3POX A;  5EE2 A;  1ZHW A;  3AAA A;  2XG6 A;  2W80 C;  3AA7 B;  1BT9 A;  4RJX A;  4FOZ A;  1G90 A;  4FT6 A;  4G75 A;  2XE2 A;  2LFU A;  3AA1 A;  3JTY A;  4N58 A;  2FGR A;  1HXT A;  4O3X B;  4RJW A;  4Z3T A;  3EMN X;  1ZHZ A;  2X27 X;  2Y0K A;  4AYM C;  4GCP A;  2FGQ X;  2YPV A;  3AAE B;  5T5F A;  2ERV A;  2MHL A;  2XMX A;  4GCS A;  5IYU A;  4AZL A;  3SYB A;  1GFO A;  4FZN A;  4O49 A;  3WI5 A;  2QTK A;  4JCH A;  1MPF A;  2JMM A;  3AA6 A;  3AA0 B;  4QQ1 A;  2KDY A;  1ORM A;  4RL9 A;  3VE1 A;  4LSI A;  4O4U A;  4AYI D;  4D64 A;  3T20 A;  3LK2 A;  1QJ8 A;  2XE1 A;  3RBH A;  5DL5 A;  3VY9 X;  5ADX L;  1QJP A;  4FZM A;  3LK4 1;  4O3Y A;  3NSG A;  4BUM X;  4E1S A;  5ADX K;  3AAA B;  4G76 A;  3VZU X;  4KR8 A;  2ZFG A;  4O4X A;  3VE2 A;  3UU2 A;  4GCQ A;  3SZV A;  4C69 X;  1HXU A;  3AA1 B;  3KVD D;  5DL8 A;  5DL6 A;  4AKM A;  1E54 A;  2N2L A;  2GE4 A;  1BXW A;  4LSH A;  4N59 A;  1Q9G A;  1IZN B;  3DA3 A;  2Y0L A;  1BH3 A;  3T0S A;  2XE5 A;  3POR A;  2LHF A;  4FRT A;  1H6S 1;  2KXP B;  1GFQ A;  2XTQ A;  2POR A;  2F1V A;  3DA4 A;  4E1T A;  1Q9F A;  3AA6 B;  3AA7 A;  7PRN A;  1YS5 A;  4O3W A;  2Y2X A;  2J1N A;  3VZT X;  1GFM A;  8PRN A;  4RLB A;  3K19 A;  3FYX A;  2Y0H A;  3LK2 B;  2F1T A;  2ODJ A;  3PQS A;  3SYS A;  4O3Z A;  3G7G A;  4KR4 A;  4FSO A;  3V8U A;  1ZHX A;  3C5O A;  4AFK A;  2J4U P;  3POQ A;  2KZ7 A;  3LK4 2;  3HOL A;  4GF4 A;  4LSE A;  3LK3 A;  4B61 A;  3UAQ A;  1MM5 A;  1THQ A;  4AKR A;  1GFP A;  1ZHT A;  3HW9 A;  1OPF A;  4FMS A;  4XNL A;  3TZG A;  3T24 A;  4AYD C;  1P4T A;  2N2M A;  4XNK A;  4AYE C;  6PRN A;  4FES A;  5DL7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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