4B61A

In meso structure of alginate transporter, alge, from pseudomoas aeruginosa, pao1. crystal form 3.
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
452
structure length
429
Chain Sequence
PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
molecule tags Membrane protein
molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
total genus 126
structure length 429
sequence length 452
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4b61A00
4B61A 3RBHA 5D5DA 4XNKA 5IYUA 4AZLA 4XNLA 4AFKA
chains in the Genus database with same CATH superfamily
4AKRA 1HXXA 4C4VA 1PHOA 3DA3A 1ZHZA 1MPFA 2F1TA 4N59A 1E54A 3AA0B 2ERVA 3K19A 4O3ZA 3SZVA 5T5FA 1GFNA 2R88A 2Y0HA 4LSEA 3T24A 2JQYA 3T0SA 1GFPA 2R4PA 4U9CA 1MM4A 3PGUA 2WVPA 5IYUA 4PR7A 1MM5A 2OMFA 5E79O 4AYMC 4GCPA 2FGQX 2Y0LA 3UAQA 3SY9A 1OPFA 4PJ0O 4AYDC 1PRNA 3UU2A 5DL6A 3VY9X 4CTDA 3LK42 2M06A 6PRNA 2F1CX 4N74A 2J4UP 3PQSA 4Z3TA 4FSOA 8PRNA 3PORA 4PUXA 3QRAA 3POUA 3PQUA 2Y2XA 4FZNA 3LK2B 2X27X 3BRYA 2WJRA 4AUIA 3SY7A 3AAEA 4AZLA 2ODJA 3LK2A 3BS0A 4C00A 4K3BA 2XE5A 4FRXA 1BT9A 2PORA 5TISO 4FOZA 1ORMA 2KXPB 4AKMA 1GFOA 3KVDD 4D64A 3VE2A 5KAFO 4AYEC 3AA7B 3RBHA 2XE2A 4IL6O 2XE1A 1ZHWA 1ZHYA 2XTQA 3DA4A 3BRZA 3O0EA 4FRTA 3VY8X 4AKRB 5DL5A 4KR4A 4C69X 2Y7SA 3AA7A 4GCQA 4QQ1A 3A0HO 3AA6B 2MNHA 2W81C 1THQA 3SYSA 4AYNA 3SZDA 1T16A 4N75A 3WU2O 3POQA 5PRNA 2JMMA 2M07A 2XMXA 5ADXK 1QJPA 2XTRA 3A0BO 4FESA 2KXPA 2N2MA 3JTYA 3PF1A 4GHBA 4LSIA 4LSHA 4O3WA 5DL8A 5GTIO 5KAIO 1HXTA 1YS5A 3PGSA 4FUVA 2WJQA 3LK3B 2FGRA 2KC0A 4FZMA 3EMNX 2IWVA 7PRNA 5ADXL 1QJ9A 1GFMA 3KZIO 4O3YA 4O4XA 2KZ7A 3NJTA 5JDPA 5DL7A 2O4VA 2LFUA 2J1NA 4RJXA 2W80C 2LHFA 3AAAB 4BUMX 4GF4A 5GV0A 3WI5A 3A2SX 3AA1B 5G38A 4RLBA 2K0LA 1Q9GA 1ZHTA 2XE3A 3LK3A 1H6S1 4GCSA 3FYXA 5D5DA 4C4VB 3UPGA 4D65A 2GE4A 4O4UA 2N2LA 2QTKA 3HOEA 4AFKA 4G75A 5GTHO 3HOLA 3VZUX 5EE2A 4B61A 1GFQA 1S5LO 3PRNA 1HXUA 4O49A 4JFBA 4N58A 4XNKA 3V8UA 4AYID 1IZNA 3AA6A 4XNLA 3HWBA 3LK41 5AFUL 2XG6A 3DWNA 2R89A 3VZTX 4E1TA 2IWWA 2R4LA 3AAAA 4LSFA 3QRCA 1BXWA 4FZLA 4RLCA 5G26A 4D5UA 1OSMA 4UB8O 2R4NA 2KDYA 5G39A 3VZWX 1G90A 5B66O 4FMSA 1T1LA 2K4TA 3PGRA 1QJ8A 5FVNA 2Y0KA 4G76A 3DZMA 3WI4A 3HW9A 2PRNA 3VE1A 2YNKA 2R4OA 3T20A 2KZ7B 2R8AA 3AAEB 3DWOX 4K3CA 5G3AA 3TZGA 4JCHA 1P4TA 1Q9FA 2F1VA 1BH3A 3GP6A 5AFUK 3G7GA 2MHLA 4FSPA 2YPVA 2ZLDA 3NSGA 4UB6O 1ZHXA 4E1SA 3C5OA 5B5EO 3POXA 3JCUO 1IZNB 4FQEA 4KR8A 4KRAA 3AA1A 3SYBA 5H2FO 4F4BA 4RJWA 2ZFGA 4FT6A 3AA0A 4O3XB 2X9KA 4RL9A 2AXTO
chains in the Genus database with same CATH topology
4AKRA 1HXXA 1PHOA 3DA3A 1ZHZA 1MPFA 2F1TA 4N59A 1E54A 3AA0B 2ERVA 3K19A 4O3ZA 3SZVA 5T5FA 1GFNA 2Y0HA 4LSEA 3T24A 3T0SA 1GFPA 4U9CA 1MM4A 5IYUA 1MM5A 2OMFA 4AYMC 4GCPA 2FGQX 2Y0LA 3UAQA 3SY9A 1OPFA 4AYDC 1PRNA 3UU2A 5DL6A 3VY9X 6PRNA 3LK42 2M06A 2J4UP 3PQSA 4Z3TA 8PRNA 3PORA 4PUXA 3QRAA 3POUA 3PQUA 2Y2XA 4FZNA 3LK2B 2X27X 4AUIA 3SY7A 3AAEA 4AZLA 2ODJA 3LK2A 2XE5A 4FRXA 1BT9A 2PORA 4FOZA 1ORMA 2KXPB 4AKMA 1GFOA 3KVDD 4D64A 3VE2A 4AYEC 3AA7B 3RBHA 2XE2A 2XE1A 1ZHWA 1ZHYA 2XTQA 3DA4A 3O0EA 4FRTA 3VY8X 4AKRB 4D5UA 5DL5A 4KR4A 4C69X 2Y7SA 3AA7A 4GCQA 4QQ1A 3AA6B 2MNHA 2W81C 1THQA 3SYSA 4AYNA 3SZDA 3POQA 5PRNA 2JMMA 2M07A 2XMXA 5ADXK 1QJPA 2XTRA 4GHBA 4FESA 2KXPA 2N2MA 3JTYA 4LSIA 4LSHA 4O3WA 5DL8A 1HXTA 1YS5A 4FUVA 3LK3B 2FGRA 2KC0A 4FZMA 3EMNX 7PRNA 5ADXL 1QJ9A 1GFMA 4O3YA 4O4XA 2KZ7A 5JDPA 5DL7A 2O4VA 2LFUA 2J1NA 4RJXA 2W80C 2LHFA 3AAAB 4BUMX 4GF4A 5GV0A 3WI5A 3A2SX 3AA1B 4RLBA 2K0LA 1Q9GA 4GCSA 2XE3A 3LK3A 1H6S1 5D5DA 3FYXA 3UPGA 4D65A 2GE4A 4O4UA 2N2LA 2QTKA 3HOEA 4AFKA 4G75A 3HOLA 3VZUX 5EE2A 4B61A 1GFQA 3PRNA 4O49A 1HXUA 3V8UA 4JFBA 4N58A 4XNKA 4AYID 1IZNA 3AA6A 4XNLA 3HWBA 3LK41 5AFUL 2XG6A 3VZTX 4E1TA 4LSFA 3AAAA 5G26A 3QRCA 1BXWA 4FZLA 4RLCA 1OSMA 3VZWX 2KDYA 1G90A 4FMSA 2K4TA 5FVNA 1QJ8A 2Y0KA 4G76A 3WI4A 3HW9A 2PRNA 3VE1A 2YNKA 3T20A 2KZ7B 3AAEB 3TZGA 4JCHA 1P4TA 1Q9FA 2F1VA 1BH3A 3GP6A 5AFUK 3G7GA 2MHLA 4FSPA 2YPVA 2ZLDA 3NSGA 4E1SA 1ZHXA 3C5OA 3POXA 1IZNB 4KR8A 4KRAA 3AA1A 3SYBA 4F4BA 4RJWA 2ZFGA 4FT6A 3AA0A 4O3XB 4FSOA 4RL9A 1ZHTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B61 A;  3RBH A;  5D5D A;  4XNK A;  5IYU A;  4AZL A;  4XNL A;  4AFK A; 
#chains in the Genus database with same CATH topology
 4AKR A;  1HXX A;  4C4V A;  1PHO A;  3DA3 A;  1ZHZ A;  1MPF A;  2F1T A;  4N59 A;  1E54 A;  3AA0 B;  2ERV A;  3K19 A;  4O3Z A;  3SZV A;  5T5F A;  1GFN A;  2R88 A;  2Y0H A;  4LSE A;  3T24 A;  2JQY A;  3T0S A;  1GFP A;  2R4P A;  4U9C A;  1MM4 A;  3PGU A;  2WVP A;  5IYU A;  4PR7 A;  1MM5 A;  2OMF A;  5E79 O;  4AYM C;  4GCP A;  2FGQ X;  2Y0L A;  3UAQ A;  3SY9 A;  1OPF A;  4PJ0 O;  4AYD C;  1PRN A;  3UU2 A;  5DL6 A;  3VY9 X;  4CTD A;  3LK4 2;  2M06 A;  6PRN A;  2F1C X;  4N74 A;  2J4U P;  3PQS A;  4Z3T A;  4FSO A;  8PRN A;  3POR A;  4PUX A;  3QRA A;  3POU A;  3PQU A;  2Y2X A;  4FZN A;  3LK2 B;  2X27 X;  3BRY A;  2WJR A;  4AUI A;  3SY7 A;  3AAE A;  4AZL A;  2ODJ A;  3LK2 A;  3BS0 A;  4C00 A;  4K3B A;  2XE5 A;  4FRX A;  1BT9 A;  2POR A;  5TIS O;  4FOZ A;  1ORM A;  2KXP B;  4AKM A;  1GFO A;  3KVD D;  4D64 A;  3VE2 A;  5KAF O;  4AYE C;  3AA7 B;  3RBH A;  2XE2 A;  4IL6 O;  2XE1 A;  1ZHW A;  1ZHY A;  2XTQ A;  3DA4 A;  3BRZ A;  3O0E A;  4FRT A;  3VY8 X;  4AKR B;  5DL5 A;  4KR4 A;  4C69 X;  2Y7S A;  3AA7 A;  4GCQ A;  4QQ1 A;  3A0H O;  3AA6 B;  2MNH A;  2W81 C;  1THQ A;  3SYS A;  4AYN A;  3SZD A;  1T16 A;  4N75 A;  3WU2 O;  3POQ A;  5PRN A;  2JMM A;  2M07 A;  2XMX A;  5ADX K;  1QJP A;  2XTR A;  3A0B O;  4FES A;  2KXP A;  2N2M A;  3JTY A;  3PF1 A;  4GHB A;  4LSI A;  4LSH A;  4O3W A;  5DL8 A;  5GTI O;  5KAI O;  1HXT A;  1YS5 A;  3PGS A;  4FUV A;  2WJQ A;  3LK3 B;  2FGR A;  2KC0 A;  4FZM A;  3EMN X;  2IWV A;  7PRN A;  5ADX L;  1QJ9 A;  1GFM A;  3KZI O;  4O3Y A;  4O4X A;  2KZ7 A;  3NJT A;  5JDP A;  5DL7 A;  2O4V A;  2LFU A;  2J1N A;  4RJX A;  2W80 C;  2LHF A;  3AAA B;  4BUM X;  4GF4 A;  5GV0 A;  3WI5 A;  3A2S X;  3AA1 B;  5G38 A;  4RLB A;  2K0L A;  1Q9G A;  1ZHT A;  2XE3 A;  3LK3 A;  1H6S 1;  4GCS A;  3FYX A;  5D5D A;  4C4V B;  3UPG A;  4D65 A;  2GE4 A;  4O4U A;  2N2L A;  2QTK A;  3HOE A;  4AFK A;  4G75 A;  5GTH O;  3HOL A;  3VZU X;  5EE2 A;  4B61 A;  1GFQ A;  1S5L O;  3PRN A;  1HXU A;  4O49 A;  4JFB A;  4N58 A;  4XNK A;  3V8U A;  4AYI D;  1IZN A;  3AA6 A;  4XNL A;  3HWB A;  3LK4 1;  5AFU L;  2XG6 A;  3DWN A;  2R89 A;  3VZT X;  4E1T A;  2IWW A;  2R4L A;  3AAA A;  4LSF A;  3QRC A;  1BXW A;  4FZL A;  4RLC A;  5G26 A;  4D5U A;  1OSM A;  4UB8 O;  2R4N A;  2KDY A;  5G39 A;  3VZW X;  1G90 A;  5B66 O;  4FMS A;  1T1L A;  2K4T A;  3PGR A;  1QJ8 A;  5FVN A;  2Y0K A;  4G76 A;  3DZM A;  3WI4 A;  3HW9 A;  2PRN A;  3VE1 A;  2YNK A;  2R4O A;  3T20 A;  2KZ7 B;  2R8A A;  3AAE B;  3DWO X;  4K3C A;  5G3A A;  3TZG A;  4JCH A;  1P4T A;  1Q9F A;  2F1V A;  1BH3 A;  3GP6 A;  5AFU K;  3G7G A;  2MHL A;  4FSP A;  2YPV A;  2ZLD A;  3NSG A;  4UB6 O;  1ZHX A;  4E1S A;  3C5O A;  5B5E O;  3POX A;  3JCU O;  1IZN B;  4FQE A;  4KR8 A;  4KRA A;  3AA1 A;  3SYB A;  5H2F O;  4F4B A;  4RJW A;  2ZFG A;  4FT6 A;  3AA0 A;  4O3X B;  2X9K A;  4RL9 A;  2AXT O; 
#chains in the Genus database with same CATH homology
 4AKR A;  1HXX A;  1PHO A;  3DA3 A;  1ZHZ A;  1MPF A;  2F1T A;  4N59 A;  1E54 A;  3AA0 B;  2ERV A;  3K19 A;  4O3Z A;  3SZV A;  5T5F A;  1GFN A;  2Y0H A;  4LSE A;  3T24 A;  3T0S A;  1GFP A;  4U9C A;  1MM4 A;  5IYU A;  1MM5 A;  2OMF A;  4AYM C;  4GCP A;  2FGQ X;  2Y0L A;  3UAQ A;  3SY9 A;  1OPF A;  4AYD C;  1PRN A;  3UU2 A;  5DL6 A;  3VY9 X;  6PRN A;  3LK4 2;  2M06 A;  2J4U P;  3PQS A;  4Z3T A;  8PRN A;  3POR A;  4PUX A;  3QRA A;  3POU A;  3PQU A;  2Y2X A;  4FZN A;  3LK2 B;  2X27 X;  4AUI A;  3SY7 A;  3AAE A;  4AZL A;  2ODJ A;  3LK2 A;  2XE5 A;  4FRX A;  1BT9 A;  2POR A;  4FOZ A;  1ORM A;  2KXP B;  4AKM A;  1GFO A;  3KVD D;  4D64 A;  3VE2 A;  4AYE C;  3AA7 B;  3RBH A;  2XE2 A;  2XE1 A;  1ZHW A;  1ZHY A;  2XTQ A;  3DA4 A;  3O0E A;  4FRT A;  3VY8 X;  4AKR B;  4D5U A;  5DL5 A;  4KR4 A;  4C69 X;  2Y7S A;  3AA7 A;  4GCQ A;  4QQ1 A;  3AA6 B;  2MNH A;  2W81 C;  1THQ A;  3SYS A;  4AYN A;  3SZD A;  3POQ A;  5PRN A;  2JMM A;  2M07 A;  2XMX A;  5ADX K;  1QJP A;  2XTR A;  4GHB A;  4FES A;  2KXP A;  2N2M A;  3JTY A;  4LSI A;  4LSH A;  4O3W A;  5DL8 A;  1HXT A;  1YS5 A;  4FUV A;  3LK3 B;  2FGR A;  2KC0 A;  4FZM A;  3EMN X;  7PRN A;  5ADX L;  1QJ9 A;  1GFM A;  4O3Y A;  4O4X A;  2KZ7 A;  5JDP A;  5DL7 A;  2O4V A;  2LFU A;  2J1N A;  4RJX A;  2W80 C;  2LHF A;  3AAA B;  4BUM X;  4GF4 A;  5GV0 A;  3WI5 A;  3A2S X;  3AA1 B;  4RLB A;  2K0L A;  1Q9G A;  4GCS A;  2XE3 A;  3LK3 A;  1H6S 1;  5D5D A;  3FYX A;  3UPG A;  4D65 A;  2GE4 A;  4O4U A;  2N2L A;  2QTK A;  3HOE A;  4AFK A;  4G75 A;  3HOL A;  3VZU X;  5EE2 A;  4B61 A;  1GFQ A;  3PRN A;  4O49 A;  1HXU A;  3V8U A;  4JFB A;  4N58 A;  4XNK A;  4AYI D;  1IZN A;  3AA6 A;  4XNL A;  3HWB A;  3LK4 1;  5AFU L;  2XG6 A;  3VZT X;  4E1T A;  4LSF A;  3AAA A;  5G26 A;  3QRC A;  1BXW A;  4FZL A;  4RLC A;  1OSM A;  3VZW X;  2KDY A;  1G90 A;  4FMS A;  2K4T A;  5FVN A;  1QJ8 A;  2Y0K A;  4G76 A;  3WI4 A;  3HW9 A;  2PRN A;  3VE1 A;  2YNK A;  3T20 A;  2KZ7 B;  3AAE B;  3TZG A;  4JCH A;  1P4T A;  1Q9F A;  2F1V A;  1BH3 A;  3GP6 A;  5AFU K;  3G7G A;  2MHL A;  4FSP A;  2YPV A;  2ZLD A;  3NSG A;  4E1S A;  1ZHX A;  3C5O A;  3POX A;  1IZN B;  4KR8 A;  4KRA A;  3AA1 A;  3SYB A;  4F4B A;  4RJW A;  2ZFG A;  4FT6 A;  3AA0 A;  4O3X B;  4FSO A;  4RL9 A;  1ZHT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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