4B61A

In meso structure of alginate transporter, alge, from pseudomoas aeruginosa, pao1. crystal form 3.
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
452
structure length
429
Chain Sequence
PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
molecule tags Membrane protein
molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
total genus 126
structure length 429
sequence length 452
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4b61A00
5D5DA 3RBHA 4B61A 5IYUA 4XNLA 4AFKA 4AZLA 4XNKA
chains in the Genus database with same CATH superfamily
3HW9A 4AYDC 2F1VA 2J1NA 4FRXA 4K3BA 2R4PA 1MM4A 1IZNA 3LK2A 2QTKA 3AA1B 2JMMA 3PGUA 3POXA 4FESA 4FRTA 4RLCA 1QJ9A 2Y0LA 3AAAA 3K19A 4GCSA 4LSFA 3BRYA 4C4VB 3HOEA 4FOZA 5GV0A 3EMNX 2LFUA 3QRAA 3LK2B 2IWWA 5AFUK 3HOLA 4AKRB 3A2SX 1HXXA 4K3CA 3AA6A 2XG6A 3AAAB 2ODJA 2JQYA 2MHLA 2KXPB 6PRNA 2R4NA 4AFKA 4C69X 2AXTO 2WJQA 4JFBA 5DL7A 4AKRA 4RLBA 3TZGA 1MM5A 1E54A 4AYNA 2XE5A 2X27X 1GFQA 3LK42 4QQ1A 2ZLDA 1T1LA 4GCPA 4E1TA 4LSHA 4B61A 5B66O 2F1TA 4XNLA 1HXUA 1S5LO 2XMXA 3SY7A 5DL6A 4D64A 3T20A 1ZHYA 1ZHTA 3SYSA 4O3ZA 3LK3B 1T16A 2ERVA 3AAEA 3WI4A 4Z3TA 4CTDA 5PRNA 2YNKA 1ORMA 2XTRA 2XTQA 4FZMA 1G90A 1MPFA 3NJTA 4FZLA 4XNKA 3BRZA 3AA7B 3NSGA 4C00A 1GFOA 5ADXL 3AA1A 2W81C 1GFPA 2KDYA 5DL5A 8PRNA 4GF4A 3AA0B 1YS5A 4GCQA 2X9KA 2PORA 4O49A 4O4XA 3GP6A 5G3AA 1GFMA 3PGRA 4AUIA 3V8UA 3G7GA 4JCHA 3AA0A 3DA3A 3WI5A 2WVPA 3BS0A 1Q9FA 4AKMA 5GTHO 5AFUL 5D5DA 3DA4A 4FSPA 3QRCA 4O3YA 3LK3A 3VY8X 2Y0KA 2Y0HA 2KC0A 2K4TA 4O3XB 3UU2A 1THQA 3A0BO 4N74A 4FQEA 1PHOA 3T0SA 4AYMC 3UPGA 5B5EO 1ZHZA 1GFNA 2W80C 4O4UA 5G38A 4GHBA 2Y2XA 1OSMA 3POQA 3PORA 5T5FA 3SZVA 2M06A 2XE2A 3SY9A 3VZUX 1BH3A 4D65A 3VE2A 3RBHA 1P4TA 2YPVA 4AYEC 2KXPA 1IZNB 2N2LA 4N58A 5EE2A 5H2FO 2XE1A 2KZ7A 3JCUO 4G76A 2R4LA 5DL8A 4G75A 3LK41 4KRAA 4U9CA 2R89A 5KAIO 4FUVA 4D5UA 4AYID 2K0LA 2PRNA 7PRNA 4FZNA 2F1CX 3DWNA 3UAQA 5ADXK 3AA6B 3PQUA 3PF1A 4BUMX 2N2MA 1QJPA 2WJRA 3KVDD 3KZIO 3POUA 4FT6A 2R8AA 4KR8A 4PJ0O 3A0HO 2FGQX 3PGSA 1H6S1 3VE1A 3PQSA 5IYUA 2ZFGA 2LHFA 4O3WA 1PRNA 4RL9A 5G39A 2IWVA 1BXWA 5TISO 3VY9X 5JDPA 4KR4A 4RJXA 2R88A 3HWBA 4LSEA 3AAEB 5GTIO 2R4OA 1OPFA 3WU2O 4RJWA 3T24A 5G26A 4AZLA 2FGRA 3SZDA 1HXTA 3AA7A 5E79O 4F4BA 1QJ8A 1ZHWA 2GE4A 2MNHA 4N75A 5FVNA 5KAFO 4IL6O 1BT9A 4FSOA 3VZWX 1ZHXA 3C5OA 3PRNA 4PR7A 4E1SA 2OMFA 3O0EA 2J4UP 2KZ7B 3DZMA 4UB6O 3FYXA 2M07A 4PUXA 2O4VA 4LSIA 4UB8O 3VZTX 3JTYA 4C4VA 4N59A 4FMSA 2XE3A 2Y7SA 3SYBA 1Q9GA 3DWOX
chains in the Genus database with same CATH topology
3HW9A 4AYDC 2F1VA 2J1NA 4FRXA 4GHBA 1MM4A 1IZNA 3LK2A 2QTKA 3AA1B 2JMMA 3POXA 4FESA 4FRTA 4GF4A 4RLCA 1QJ9A 2Y0LA 3AAAA 3K19A 4GCSA 4LSFA 3HOEA 4FOZA 5GV0A 3EMNX 2LFUA 3QRAA 3LK2B 5AFUK 3HOLA 4AKRB 3A2SX 1HXXA 3AA6A 2XG6A 3AAAB 2ODJA 2MHLA 2KXPB 6PRNA 4AFKA 4C69X 4JFBA 5DL7A 4AKRA 4RLBA 3TZGA 1MM5A 1E54A 4AYNA 2XE5A 2X27X 1GFQA 3LK42 4QQ1A 2ZLDA 4GCPA 4E1TA 4LSHA 4B61A 2F1TA 4XNLA 1HXUA 2XMXA 3SY7A 5DL6A 4D64A 3T20A 1ZHYA 1ZHTA 3SYSA 4O3ZA 3LK3B 2ERVA 3AAEA 3WI4A 4Z3TA 5PRNA 2YNKA 1ORMA 2XTRA 2XTQA 4FZMA 1G90A 1MPFA 4XNKA 4FZLA 3AA7B 3NSGA 1GFOA 5ADXL 3AA1A 2W81C 1GFPA 2KDYA 5DL5A 8PRNA 3AA0B 1YS5A 4GCQA 2PORA 4O49A 4O4XA 3GP6A 4AUIA 1GFMA 3V8UA 3G7GA 4JCHA 3AA0A 3DA3A 3WI5A 1Q9FA 4AKMA 5AFUL 5D5DA 3DA4A 4FSPA 3QRCA 4O3YA 3LK3A 3VY8X 2Y0KA 2Y0HA 2KC0A 2K4TA 3UU2A 1THQA 1PHOA 3T0SA 4AYMC 3UPGA 1ZHZA 1GFNA 2W80C 4O4UA 2Y2XA 1OSMA 3POQA 3PORA 5T5FA 3SZVA 2M06A 2XE2A 3SY9A 3VZUX 1BH3A 4D65A 3VE2A 3RBHA 1P4TA 2YPVA 4AYEC 2KXPA 1IZNB 2N2LA 4N58A 5EE2A 2XE1A 2KZ7A 4G76A 5DL8A 4G75A 3LK41 4KRAA 4U9CA 4D5UA 4FUVA 4AYID 2K0LA 2PRNA 7PRNA 4FZNA 5ADXK 3UAQA 3AA6B 3PQUA 4BUMX 2N2MA 1QJPA 3KVDD 3POUA 4FT6A 4KR8A 2FGQX 1H6S1 3VE1A 3PQSA 5IYUA 2ZFGA 2LHFA 4O3WA 1PRNA 4RL9A 1BXWA 3VY9X 5JDPA 4KR4A 4RJXA 3HWBA 4LSEA 3AAEB 1OPFA 4RJWA 3T24A 5G26A 4AZLA 2FGRA 3SZDA 1HXTA 3AA7A 4F4BA 1QJ8A 1ZHWA 2GE4A 2MNHA 5FVNA 1BT9A 4FSOA 3VZWX 1ZHXA 3C5OA 3PRNA 4E1SA 2OMFA 3O0EA 2J4UP 2KZ7B 3FYXA 2M07A 4PUXA 2O4VA 4LSIA 3VZTX 3JTYA 4N59A 4FMSA 2XE3A 2Y7SA 3SYBA 1Q9GA 4O3XB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D5D A;  3RBH A;  4B61 A;  5IYU A;  4XNL A;  4AFK A;  4AZL A;  4XNK A; 
#chains in the Genus database with same CATH topology
 3HW9 A;  4AYD C;  2F1V A;  2J1N A;  4FRX A;  4K3B A;  2R4P A;  1MM4 A;  1IZN A;  3LK2 A;  2QTK A;  3AA1 B;  2JMM A;  3PGU A;  3POX A;  4FES A;  4FRT A;  4RLC A;  1QJ9 A;  2Y0L A;  3AAA A;  3K19 A;  4GCS A;  4LSF A;  3BRY A;  4C4V B;  3HOE A;  4FOZ A;  5GV0 A;  3EMN X;  2LFU A;  3QRA A;  3LK2 B;  2IWW A;  5AFU K;  3HOL A;  4AKR B;  3A2S X;  1HXX A;  4K3C A;  3AA6 A;  2XG6 A;  3AAA B;  2ODJ A;  2JQY A;  2MHL A;  2KXP B;  6PRN A;  2R4N A;  4AFK A;  4C69 X;  2AXT O;  2WJQ A;  4JFB A;  5DL7 A;  4AKR A;  4RLB A;  3TZG A;  1MM5 A;  1E54 A;  4AYN A;  2XE5 A;  2X27 X;  1GFQ A;  3LK4 2;  4QQ1 A;  2ZLD A;  1T1L A;  4GCP A;  4E1T A;  4LSH A;  4B61 A;  5B66 O;  2F1T A;  4XNL A;  1HXU A;  1S5L O;  2XMX A;  3SY7 A;  5DL6 A;  4D64 A;  3T20 A;  1ZHY A;  1ZHT A;  3SYS A;  4O3Z A;  3LK3 B;  1T16 A;  2ERV A;  3AAE A;  3WI4 A;  4Z3T A;  4CTD A;  5PRN A;  2YNK A;  1ORM A;  2XTR A;  2XTQ A;  4FZM A;  1G90 A;  1MPF A;  3NJT A;  4FZL A;  4XNK A;  3BRZ A;  3AA7 B;  3NSG A;  4C00 A;  1GFO A;  5ADX L;  3AA1 A;  2W81 C;  1GFP A;  2KDY A;  5DL5 A;  8PRN A;  4GF4 A;  3AA0 B;  1YS5 A;  4GCQ A;  2X9K A;  2POR A;  4O49 A;  4O4X A;  3GP6 A;  5G3A A;  1GFM A;  3PGR A;  4AUI A;  3V8U A;  3G7G A;  4JCH A;  3AA0 A;  3DA3 A;  3WI5 A;  2WVP A;  3BS0 A;  1Q9F A;  4AKM A;  5GTH O;  5AFU L;  5D5D A;  3DA4 A;  4FSP A;  3QRC A;  4O3Y A;  3LK3 A;  3VY8 X;  2Y0K A;  2Y0H A;  2KC0 A;  2K4T A;  4O3X B;  3UU2 A;  1THQ A;  3A0B O;  4N74 A;  4FQE A;  1PHO A;  3T0S A;  4AYM C;  3UPG A;  5B5E O;  1ZHZ A;  1GFN A;  2W80 C;  4O4U A;  5G38 A;  4GHB A;  2Y2X A;  1OSM A;  3POQ A;  3POR A;  5T5F A;  3SZV A;  2M06 A;  2XE2 A;  3SY9 A;  3VZU X;  1BH3 A;  4D65 A;  3VE2 A;  3RBH A;  1P4T A;  2YPV A;  4AYE C;  2KXP A;  1IZN B;  2N2L A;  4N58 A;  5EE2 A;  5H2F O;  2XE1 A;  2KZ7 A;  3JCU O;  4G76 A;  2R4L A;  5DL8 A;  4G75 A;  3LK4 1;  4KRA A;  4U9C A;  2R89 A;  5KAI O;  4FUV A;  4D5U A;  4AYI D;  2K0L A;  2PRN A;  7PRN A;  4FZN A;  2F1C X;  3DWN A;  3UAQ A;  5ADX K;  3AA6 B;  3PQU A;  3PF1 A;  4BUM X;  2N2M A;  1QJP A;  2WJR A;  3KVD D;  3KZI O;  3POU A;  4FT6 A;  2R8A A;  4KR8 A;  4PJ0 O;  3A0H O;  2FGQ X;  3PGS A;  1H6S 1;  3VE1 A;  3PQS A;  5IYU A;  2ZFG A;  2LHF A;  4O3W A;  1PRN A;  4RL9 A;  5G39 A;  2IWV A;  1BXW A;  5TIS O;  3VY9 X;  5JDP A;  4KR4 A;  4RJX A;  2R88 A;  3HWB A;  4LSE A;  3AAE B;  5GTI O;  2R4O A;  1OPF A;  3WU2 O;  4RJW A;  3T24 A;  5G26 A;  4AZL A;  2FGR A;  3SZD A;  1HXT A;  3AA7 A;  5E79 O;  4F4B A;  1QJ8 A;  1ZHW A;  2GE4 A;  2MNH A;  4N75 A;  5FVN A;  5KAF O;  4IL6 O;  1BT9 A;  4FSO A;  3VZW X;  1ZHX A;  3C5O A;  3PRN A;  4PR7 A;  4E1S A;  2OMF A;  3O0E A;  2J4U P;  2KZ7 B;  3DZM A;  4UB6 O;  3FYX A;  2M07 A;  4PUX A;  2O4V A;  4LSI A;  4UB8 O;  3VZT X;  3JTY A;  4C4V A;  4N59 A;  4FMS A;  2XE3 A;  2Y7S A;  3SYB A;  1Q9G A;  3DWO X; 
#chains in the Genus database with same CATH homology
 3HW9 A;  4AYD C;  2F1V A;  2J1N A;  4FRX A;  4GHB A;  1MM4 A;  1IZN A;  3LK2 A;  2QTK A;  3AA1 B;  2JMM A;  3POX A;  4FES A;  4FRT A;  4GF4 A;  4RLC A;  1QJ9 A;  2Y0L A;  3AAA A;  3K19 A;  4GCS A;  4LSF A;  3HOE A;  4FOZ A;  5GV0 A;  3EMN X;  2LFU A;  3QRA A;  3LK2 B;  5AFU K;  3HOL A;  4AKR B;  3A2S X;  1HXX A;  3AA6 A;  2XG6 A;  3AAA B;  2ODJ A;  2MHL A;  2KXP B;  6PRN A;  4AFK A;  4C69 X;  4JFB A;  5DL7 A;  4AKR A;  4RLB A;  3TZG A;  1MM5 A;  1E54 A;  4AYN A;  2XE5 A;  2X27 X;  1GFQ A;  3LK4 2;  4QQ1 A;  2ZLD A;  4GCP A;  4E1T A;  4LSH A;  4B61 A;  2F1T A;  4XNL A;  1HXU A;  2XMX A;  3SY7 A;  5DL6 A;  4D64 A;  3T20 A;  1ZHY A;  1ZHT A;  3SYS A;  4O3Z A;  3LK3 B;  2ERV A;  3AAE A;  3WI4 A;  4Z3T A;  5PRN A;  2YNK A;  1ORM A;  2XTR A;  2XTQ A;  4FZM A;  1G90 A;  1MPF A;  4XNK A;  4FZL A;  3AA7 B;  3NSG A;  1GFO A;  5ADX L;  3AA1 A;  2W81 C;  1GFP A;  2KDY A;  5DL5 A;  8PRN A;  3AA0 B;  1YS5 A;  4GCQ A;  2POR A;  4O49 A;  4O4X A;  3GP6 A;  4AUI A;  1GFM A;  3V8U A;  3G7G A;  4JCH A;  3AA0 A;  3DA3 A;  3WI5 A;  1Q9F A;  4AKM A;  5AFU L;  5D5D A;  3DA4 A;  4FSP A;  3QRC A;  4O3Y A;  3LK3 A;  3VY8 X;  2Y0K A;  2Y0H A;  2KC0 A;  2K4T A;  3UU2 A;  1THQ A;  1PHO A;  3T0S A;  4AYM C;  3UPG A;  1ZHZ A;  1GFN A;  2W80 C;  4O4U A;  2Y2X A;  1OSM A;  3POQ A;  3POR A;  5T5F A;  3SZV A;  2M06 A;  2XE2 A;  3SY9 A;  3VZU X;  1BH3 A;  4D65 A;  3VE2 A;  3RBH A;  1P4T A;  2YPV A;  4AYE C;  2KXP A;  1IZN B;  2N2L A;  4N58 A;  5EE2 A;  2XE1 A;  2KZ7 A;  4G76 A;  5DL8 A;  4G75 A;  3LK4 1;  4KRA A;  4U9C A;  4D5U A;  4FUV A;  4AYI D;  2K0L A;  2PRN A;  7PRN A;  4FZN A;  5ADX K;  3UAQ A;  3AA6 B;  3PQU A;  4BUM X;  2N2M A;  1QJP A;  3KVD D;  3POU A;  4FT6 A;  4KR8 A;  2FGQ X;  1H6S 1;  3VE1 A;  3PQS A;  5IYU A;  2ZFG A;  2LHF A;  4O3W A;  1PRN A;  4RL9 A;  1BXW A;  3VY9 X;  5JDP A;  4KR4 A;  4RJX A;  3HWB A;  4LSE A;  3AAE B;  1OPF A;  4RJW A;  3T24 A;  5G26 A;  4AZL A;  2FGR A;  3SZD A;  1HXT A;  3AA7 A;  4F4B A;  1QJ8 A;  1ZHW A;  2GE4 A;  2MNH A;  5FVN A;  1BT9 A;  4FSO A;  3VZW X;  1ZHX A;  3C5O A;  3PRN A;  4E1S A;  2OMF A;  3O0E A;  2J4U P;  2KZ7 B;  3FYX A;  2M07 A;  4PUX A;  2O4V A;  4LSI A;  3VZT X;  3JTY A;  4N59 A;  4FMS A;  2XE3 A;  2Y7S A;  3SYB A;  1Q9G A;  4O3X B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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