4B9KB

Pvhl-elob-eloc complex_(2s,4r)-1-(3-amino-2-methylbenzoyl)-4-hydroxy-n-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide bound
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
97
structure length
88
Chain Sequence
MMYVKLISSDGHEFIVKREHALTSGTIKAMLSTNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
source organism Homo sapiens
publication title Small-Molecule Inhibitors of the Interaction between the E3 Ligase Vhl and Hif1 Alpha
pubmed doi rcsb
molecule keywords TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
total genus 25
structure length 88
sequence length 97
chains with identical sequence H, K
ec nomenclature
pdb deposition date 2012-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 4b9kB00
5HYWB 3ZTDB 3M5BA 1DSXA 3L2OA 3I3NA 2FNJC 1EOEA 4W9CB 1R28A 1LQBB 5H7GA 5A6RA 4U77A 1BUOA 4CXTA 2JZ3C 1P22B 3M4TA 3C6NA 2VKPA 4EOZA 4W9FB 3LNMB 4W9GB 4CXIA 2OVRA 2Z8HA 2P1QA 2Q81A 3ZNGB 3ZUNB 2PPIA 3HU6A 3M52A 4APFA 4ZOUA 3BIMA 4JTDB 4W9HB 5BXBA 3B84A 1LDKD 5EUPA 4W9HH 1R29A 4B9KB 3M8VA 4CP3A 1R2BA 2ASSA 3GA1A 2E32B 5DAFA 1EODA 1HV2A 3OGLA 3ZRFB 3HVEA 4W9IB 4B95B 3OHUA 4BKTB 4U2NA 2ASTA 1VCBB 4JTAB 3DRZA 2VPKA 4U2MA 1NN7A 5BXDA 1FS1B 4JGHC 3FKCA 3HTMA 2IZVC 2P1MA 2R9RB 3OHVA 1QDWA 3MKSA 1T1DA 1NEXA 4B9KE 4I6JC 1CS3A 3C6PA 5BXHA 4W9DB 5DADA 3ZTCB 2P1NA 1EXBE 3C6OA 3V7DA 4UYIA 3ZKJB 4AWJB 5BO4C 1A68A 2I2RA 4W9EB 5A15A 3HQIA 3LBZA 2OVPA 2IHCA 5IBKA 5HZGC 1FS2B 4WQOC 2A79B 5LLIB 4J8ZA 2YY9A 3DCGB 4W9JB 2IF5A 4UIJA 1S1GA 2MA9C 5H7HA 3WSOB 3KVTA 5FTAA 2P1OA 2NZ0B 4W9KB 4BGCA 1QDVA 4JTCB 2OVQA 2C9WC 3HVEB 1LM8C 5JH5B 4AP2A 4BKSB 2NN2A 4CRHA 4N9F5 4HXIA 4AJYC 3OGMA 3E4UA 1FQVB 3ZRCB 1EOFA 3OGKA 3LUTB 4W9LB 4CXJA 2E31B 2P1PA
chains in the Genus database with same CATH superfamily
5HYWB 3ZTDB 3M5BA 1DSXA 3L2OA 3I3NA 2FNJC 1EOEA 4W9CB 1R28A 1LQBB 5H7GA 5A6RA 4U77A 1BUOA 4CXTA 2JZ3C 1P22B 3M4TA 3C6NA 2VKPA 4EOZA 4W9FB 3LNMB 4W9GB 4CXIA 2OVRA 2Z8HA 2P1QA 2Q81A 3ZNGB 3ZUNB 2PPIA 3HU6A 3M52A 4APFA 4ZOUA 3BIMA 4JTDB 4W9HB 4ZGCA 5BXBA 3B84A 1LDKD 5EUPA 4W9HH 1R29A 4B9KB 3M8VA 4CP3A 1R2BA 2ASSA 3GA1A 2E32B 5DAFA 1EODA 1HV2A 3OGLA 3ZRFB 3HVEA 4W9IB 4B95B 3OHUA 4BKTB 4U2NA 2ASTA 1VCBB 4JTAB 3DRZA 2VPKA 4U2MA 1NN7A 5BXDA 1FS1B 4JGHC 3FKCA 3HTMA 2IZVC 2P1MA 2R9RB 3OHVA 1QDWA 3MKSA 1T1DA 1NEXA 4B9KE 4I6JC 1CS3A 3C6PA 5BXHA 4W9DB 5DADA 3ZTCB 2P1NA 3DRYA 1EXBE 3C6OA 3V7DA 4UYIA 3ZKJB 4AWJB 5BO4C 1A68A 3DRXA 2I2RA 4W9EB 5A15A 3HQIA 3LBZA 2OVPA 2IHCA 5IBKA 5HZGC 1FS2B 4WQOC 2A79B 5LLIB 4J8ZA 2YY9A 3DCGB 4W9JB 2IF5A 4UIJA 1S1GA 2MA9C 5H7HA 3WSOB 3KVTA 5FTAA 2P1OA 2NZ0B 4W9KB 4BGCA 1QDVA 4JTCB 2OVQA 2C9WC 3HVEB 1LM8C 5JH5B 4AP2A 4BKSB 2NN2A 4CRHA 4N9F5 4HXIA 4AJYC 3OGMA 3E4UA 1FQVB 3ZRCB 1EOFA 3OGKA 3LUTB 4W9LB 4CXJA 2E31B 2P1PA 4YY8A
chains in the Genus database with same CATH topology
5HYWB 3ZTDB 3M5BA 1DSXA 3L2OA 3I3NA 2FNJC 1EOEA 4W9CB 1R28A 1LQBB 5H7GA 5A6RA 4U77A 1BUOA 4CXTA 2JZ3C 1P22B 3M4TA 3C6NA 2VKPA 4EOZA 4W9FB 3LNMB 4W9GB 4CXIA 2OVRA 2Z8HA 2P1QA 2Q81A 3ZNGB 3ZUNB 2PPIA 3HU6A 3M52A 4APFA 4ZOUA 3BIMA 4JTDB 4W9HB 4ZGCA 5BXBA 3B84A 1LDKD 5EUPA 4W9HH 1R29A 4B9KB 3M8VA 4CP3A 1R2BA 2ASSA 3GA1A 2E32B 5DAFA 1EODA 1HV2A 3OGLA 3ZRFB 3HVEA 4W9IB 4B95B 3OHUA 4BKTB 4U2NA 2ASTA 1VCBB 4JTAB 3DRZA 2VPKA 4U2MA 1NN7A 5BXDA 1FS1B 4JGHC 3FKCA 3HTMA 2IZVC 2P1MA 2R9RB 3OHVA 1QDWA 3MKSA 1T1DA 1NEXA 4B9KE 4I6JC 1CS3A 3C6PA 5BXHA 4W9DB 5DADA 3ZTCB 2P1NA 3DRYA 1EXBE 3C6OA 3V7DA 4UYIA 3ZKJB 4AWJB 5BO4C 1A68A 3DRXA 2I2RA 4W9EB 5A15A 3HQIA 3LBZA 2OVPA 2IHCA 5IBKA 5HZGC 1FS2B 4WQOC 2A79B 5LLIB 4J8ZA 2YY9A 3DCGB 4W9JB 2IF5A 4UIJA 1S1GA 2MA9C 5H7HA 3WSOB 3KVTA 5FTAA 2P1OA 2NZ0B 4W9KB 4BGCA 1QDVA 4JTCB 2OVQA 2C9WC 3HVEB 1LM8C 5JH5B 4AP2A 4BKSB 2NN2A 4CRHA 4N9F5 4HXIA 4AJYC 3OGMA 3E4UA 1FQVB 3ZRCB 1EOFA 3OGKA 3LUTB 4W9LB 4CXJA 2E31B 2P1PA 4YY8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HYW B;  3ZTD B;  3M5B A;  1DSX A;  3L2O A;  3I3N A;  2FNJ C;  1EOE A;  4W9C B;  1R28 A;  1LQB B;  5H7G A;  5A6R A;  4U77 A;  1BUO A;  4CXT A;  2JZ3 C;  1P22 B;  3M4T A;  3C6N A;  2VKP A;  4EOZ A;  4W9F B;  3LNM B;  4W9G B;  4CXI A;  2OVR A;  2Z8H A;  2P1Q A;  2Q81 A;  3ZNG B;  3ZUN B;  2PPI A;  3HU6 A;  3M52 A;  4APF A;  4ZOU A;  3BIM A;  4JTD B;  4W9H B;  5BXB A;  3B84 A;  1LDK D;  5EUP A;  4W9H H;  1R29 A;  4B9K B;  3M8V A;  4CP3 A;  1R2B A;  2ASS A;  3GA1 A;  2E32 B;  5DAF A;  1EOD A;  1HV2 A;  3OGL A;  3ZRF B;  3HVE A;  4W9I B;  4B95 B;  3OHU A;  4BKT B;  4U2N A;  2AST A;  1VCB B;  4JTA B;  3DRZ A;  2VPK A;  4U2M A;  1NN7 A;  5BXD A;  1FS1 B;  4JGH C;  3FKC A;  3HTM A;  2IZV C;  2P1M A;  2R9R B;  3OHV A;  1QDW A;  3MKS A;  1T1D A;  1NEX A;  4B9K E;  4I6J C;  1CS3 A;  3C6P A;  5BXH A;  4W9D B;  5DAD A;  3ZTC B;  2P1N A;  1EXB E;  3C6O A;  3V7D A;  4UYI A;  3ZKJ B;  4AWJ B;  5BO4 C;  1A68 A;  2I2R A;  4W9E B;  5A15 A;  3HQI A;  3LBZ A;  2OVP A;  2IHC A;  5IBK A;  5HZG C;  1FS2 B;  4WQO C;  2A79 B;  5LLI B;  4J8Z A;  2YY9 A;  3DCG B;  4W9J B;  2IF5 A;  4UIJ A;  1S1G A;  2MA9 C;  5H7H A;  3WSO B;  3KVT A;  5FTA A;  2P1O A;  2NZ0 B;  4W9K B;  4BGC A;  1QDV A;  4JTC B;  2OVQ A;  2C9W C;  3HVE B;  1LM8 C;  5JH5 B;  4AP2 A;  4BKS B;  2NN2 A;  4CRH A;  4N9F 5;  4HXI A;  4AJY C;  3OGM A;  3E4U A;  1FQV B;  3ZRC B;  1EOF A;  3OGK A;  3LUT B;  4W9L B;  4CXJ A;  2E31 B;  2P1P A; 
#chains in the Genus database with same CATH topology
 5HYW B;  3ZTD B;  3M5B A;  1DSX A;  3L2O A;  3I3N A;  2FNJ C;  1EOE A;  4W9C B;  1R28 A;  1LQB B;  5H7G A;  5A6R A;  4U77 A;  1BUO A;  4CXT A;  2JZ3 C;  1P22 B;  3M4T A;  3C6N A;  2VKP A;  4EOZ A;  4W9F B;  3LNM B;  4W9G B;  4CXI A;  2OVR A;  2Z8H A;  2P1Q A;  2Q81 A;  3ZNG B;  3ZUN B;  2PPI A;  3HU6 A;  3M52 A;  4APF A;  4ZOU A;  3BIM A;  4JTD B;  4W9H B;  4ZGC A;  5BXB A;  3B84 A;  1LDK D;  5EUP A;  4W9H H;  1R29 A;  4B9K B;  3M8V A;  4CP3 A;  1R2B A;  2ASS A;  3GA1 A;  2E32 B;  5DAF A;  1EOD A;  1HV2 A;  3OGL A;  3ZRF B;  3HVE A;  4W9I B;  4B95 B;  3OHU A;  4BKT B;  4U2N A;  2AST A;  1VCB B;  4JTA B;  3DRZ A;  2VPK A;  4U2M A;  1NN7 A;  5BXD A;  1FS1 B;  4JGH C;  3FKC A;  3HTM A;  2IZV C;  2P1M A;  2R9R B;  3OHV A;  1QDW A;  3MKS A;  1T1D A;  1NEX A;  4B9K E;  4I6J C;  1CS3 A;  3C6P A;  5BXH A;  4W9D B;  5DAD A;  3ZTC B;  2P1N A;  3DRY A;  1EXB E;  3C6O A;  3V7D A;  4UYI A;  3ZKJ B;  4AWJ B;  5BO4 C;  1A68 A;  3DRX A;  2I2R A;  4W9E B;  5A15 A;  3HQI A;  3LBZ A;  2OVP A;  2IHC A;  5IBK A;  5HZG C;  1FS2 B;  4WQO C;  2A79 B;  5LLI B;  4J8Z A;  2YY9 A;  3DCG B;  4W9J B;  2IF5 A;  4UIJ A;  1S1G A;  2MA9 C;  5H7H A;  3WSO B;  3KVT A;  5FTA A;  2P1O A;  2NZ0 B;  4W9K B;  4BGC A;  1QDV A;  4JTC B;  2OVQ A;  2C9W C;  3HVE B;  1LM8 C;  5JH5 B;  4AP2 A;  4BKS B;  2NN2 A;  4CRH A;  4N9F 5;  4HXI A;  4AJY C;  3OGM A;  3E4U A;  1FQV B;  3ZRC B;  1EOF A;  3OGK A;  3LUT B;  4W9L B;  4CXJ A;  2E31 B;  2P1P A;  4YY8 A; 
#chains in the Genus database with same CATH homology
 5HYW B;  3ZTD B;  3M5B A;  1DSX A;  3L2O A;  3I3N A;  2FNJ C;  1EOE A;  4W9C B;  1R28 A;  1LQB B;  5H7G A;  5A6R A;  4U77 A;  1BUO A;  4CXT A;  2JZ3 C;  1P22 B;  3M4T A;  3C6N A;  2VKP A;  4EOZ A;  4W9F B;  3LNM B;  4W9G B;  4CXI A;  2OVR A;  2Z8H A;  2P1Q A;  2Q81 A;  3ZNG B;  3ZUN B;  2PPI A;  3HU6 A;  3M52 A;  4APF A;  4ZOU A;  3BIM A;  4JTD B;  4W9H B;  4ZGC A;  5BXB A;  3B84 A;  1LDK D;  5EUP A;  4W9H H;  1R29 A;  4B9K B;  3M8V A;  4CP3 A;  1R2B A;  2ASS A;  3GA1 A;  2E32 B;  5DAF A;  1EOD A;  1HV2 A;  3OGL A;  3ZRF B;  3HVE A;  4W9I B;  4B95 B;  3OHU A;  4BKT B;  4U2N A;  2AST A;  1VCB B;  4JTA B;  3DRZ A;  2VPK A;  4U2M A;  1NN7 A;  5BXD A;  1FS1 B;  4JGH C;  3FKC A;  3HTM A;  2IZV C;  2P1M A;  2R9R B;  3OHV A;  1QDW A;  3MKS A;  1T1D A;  1NEX A;  4B9K E;  4I6J C;  1CS3 A;  3C6P A;  5BXH A;  4W9D B;  5DAD A;  3ZTC B;  2P1N A;  3DRY A;  1EXB E;  3C6O A;  3V7D A;  4UYI A;  3ZKJ B;  4AWJ B;  5BO4 C;  1A68 A;  3DRX A;  2I2R A;  4W9E B;  5A15 A;  3HQI A;  3LBZ A;  2OVP A;  2IHC A;  5IBK A;  5HZG C;  1FS2 B;  4WQO C;  2A79 B;  5LLI B;  4J8Z A;  2YY9 A;  3DCG B;  4W9J B;  2IF5 A;  4UIJ A;  1S1G A;  2MA9 C;  5H7H A;  3WSO B;  3KVT A;  5FTA A;  2P1O A;  2NZ0 B;  4W9K B;  4BGC A;  1QDV A;  4JTC B;  2OVQ A;  2C9W C;  3HVE B;  1LM8 C;  5JH5 B;  4AP2 A;  4BKS B;  2NN2 A;  4CRH A;  4N9F 5;  4HXI A;  4AJY C;  3OGM A;  3E4U A;  1FQV B;  3ZRC B;  1EOF A;  3OGK A;  3LUT B;  4W9L B;  4CXJ A;  2E31 B;  2P1P A;  4YY8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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