4BAAA

Redesign of a phenylalanine aminomutase into a beta-phenylalanine ammonia lyase
Total Genus 245
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
245
sequence length
667
structure length
635
Chain Sequence
SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIYGVTTGFGACSSSRTNRLSELQESLIRCLLAGVFTDELPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHTLVDRLAEFEKRLSDRLENEMTAVRVLYERIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Taxus wallichiana var. chinensis
publication title Redesign of a Phenylalanine Aminomutase Into a Phenylalanine Ammonia Lyase
rcsb
molecule keywords PHENYLALANINE AMMONIA-LYASE
total genus 245
structure length 635
sequence length 667
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2012-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4baaA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4baaA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4baaA02
2O7EA 5HW2A 3NO9A 1TJ7A 4NLEA 1B8FA 4C5RA 2O6YA 4FLCA 1DCNA 1KQ7A 4ADMA 1TJVA 1TJUA 1K62A 1HY0A 2PTSA 3E04A 3R6VA 1GK3A 5EYVA 3OCEA 1XWOA 2O7BA 1J3UA 1C3CA 2FUSA 2J91A 2OHYA 4MX2A 2QVEA 1K7WA 1YFMA 1T6PA 1Q5NA 1U15A 5F92A 1JSWA 3KDYA 3OCFA 5EYTA 3GTDA 1U16A 4APAA 1YISA 3QBPA 4BABA 2NYNA 1C3UA 3TV2A 1FUQA 1AUWA 4V2QA 4HGVA 2PTRA 1VDKA 3C8TA 4BAAA 1HY1A 3CZOA 1GKJA 3KDZA 4EEIA 2NYFA 1TJWA 5F91A 3RRPA 1FUOA 2O7DA 4APBA 4NSLA 1T6JA 2O7FA 4C6GA 1I0AA 2PFMA 1FUPA 1W27A 4V2RA 4FFXA 2X75A 1RE5A 5D6BA 3R6YA 2O78A 2PTQA 4ADLA 1YFEA 2HVGA 2VD6A 4C5SA 3NZ4A 3RD8A 3R6QA 2QGAB 3UNVA 2RJRA 3BHGA 1Y2MA 4CQ5A 2E9FA 1FURA 1DOFA 2YIIA 4C5UA 4EFCA 1EB4A 1GKMA 1GK2A 3GZHA 2RJSA
chains in the Genus database with same CATH superfamily
2O7EA 5HW2A 3NO9A 1TJ7A 3GTPA 4C2MA 3LRDA 2R92A 4NLEA 4C5RA 1B8FA 2EZCA 2O6YA 3H0GA 3GTMA 4FLCA 3LR8A 1DCNA 1KQ7A 3GTLA 4ADMA 1TJVA 2O5JD 4CEHA 2AQLA 1XLYA 1TJUA 1ZYMA 1K62A 1I50A 2A6HD 1HY0A 2K3NA 2VUMA 2PTSA 2LPJA 3E04A 3R6VA 2A69D 3U4QA 1GK3A 5EYVA 3OCEA 1XWOA 1ZYRD 3EZEA 3CRVA 5H8WA 2MQAA 2O7BA 1C3CA 1J3UA 5IZ2A 2FUSA 2J91A 2OHYA 3LR2A 4MX2A 2QVEA 1YNND 1K7WA 1YFMA 1T6PA 1Q5NA 1U15A 1R9TA 5F92A 1JSWA 2JA5A 2FIOA 3KDYA 3OCFA 5EYTA 3CQZA 3GTDA 1XMCA 1U16A 2F5JA 4APAA 1YISA 3EZBA 3QBPA 4BABA 1K83A 2NYNA 1C3UA 3TV2A 1FUQA 3CRW1 1TWCA 1AUWA 4FBSA 1IW7D 4V2QA 2LTHA 4HGVA 2LKMB 2PTRA 1Y1VA 2A68D 2FIPA 2HWGA 1TWGA 2YU9A 2EZBA 1TWHA 2EZAA 2BE5D 2VL7A 1VDKA 3C8TA 2NVXA 3GTGA 4BAAA 1HY1A 3CZOA 1SFOA 1GKJA 3KDZA 3GTJA 1XL8A 4EEIA 2NYFA 3EZAA 1TJWA 2K3QA 2LPIA 3U44A 2R7ZA 5F91A 3RRPA 2N3EA 1FUOA 2E2IA 2N1DB 1I3QA 2O7DA 4APBA 2VSFA 4NSLA 2MP0A 1T6JA 2O7FA 4C6GA 1I0AA 2PFMA 1FUPA 2X0PA 1W27A 2LYIA 4V2RA 4FFXA 1XMDA 2MX9A 2X75A 1Y1WA 5M0JA 1RE5A 5D6BA 3R6YA 1HQMD 1YNJD 1WCMA 1TWAA 3GTKA 2JA7A 2O78A 2PTQA 2FENA 1EZBA 4QIWA 4ADLA 1YFEA 2MX8A 3GTOA 4CEJA 2HVGA 2A6ED 2VD6A 3LR6A 4C5SA 3NZ4A 4A15A 2K3OA 2HROA 3RD8A 3R6QA 2JA6A 2QGAB 3UNVA 2RJRA 3BHGA 2X0QA 1Y2MA 1XL7A 2NVYA 2X0OA 4CQ5A 2Y0NA 4WNLA 2VK9A 1TWFA 3FKIA 5M0IA 2FELA 1SMYD 2E9FA 1EZAA 1FURA 2CW0D 2B63A 1DOFA 2YIIA 4C5UA 2R93A 4EFCA 4CEIA 3GTQA 1EB4A 1GKMA 1GK2A 2E2HA 3GZHA 2RJSA 1I6VD
chains in the Genus database with same CATH topology
2O7EA 5HW2A 3NO9A 1TJ7A 4NLEA 1B8FA 4C5RA 2O6YA 4FLCA 1DCNA 1KQ7A 4ADMA 1TJVA 1TJUA 1K62A 1HY0A 2PTSA 3E04A 3R6VA 1GK3A 5EYVA 3OCEA 1XWOA 2O7BA 1J3UA 1C3CA 2FUSA 2J91A 2OHYA 4MX2A 2QVEA 1K7WA 1YFMA 1T6PA 1Q5NA 1U15A 5F92A 1JSWA 3KDYA 3OCFA 5EYTA 3GTDA 1U16A 4APAA 1YISA 3QBPA 4BABA 2NYNA 1C3UA 3TV2A 1FUQA 1AUWA 4V2QA 4HGVA 2PTRA 1VDKA 3C8TA 4BAAA 1HY1A 3CZOA 1GKJA 3KDZA 4EEIA 2NYFA 1TJWA 5F91A 3RRPA 1FUOA 2O7DA 4APBA 4NSLA 1T6JA 2O7FA 4C6GA 1I0AA 2PFMA 1FUPA 1W27A 4V2RA 4FFXA 2X75A 1RE5A 5D6BA 3R6YA 2O78A 2PTQA 4ADLA 1YFEA 2HVGA 2VD6A 4C5SA 3NZ4A 3RD8A 3R6QA 2QGAB 3UNVA 2RJRA 3BHGA 1Y2MA 4CQ5A 2E9FA 1FURA 1DOFA 2YIIA 4C5UA 4EFCA 1EB4A 1GKMA 1GK2A 3GZHA 2RJSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O7E A;  5HW2 A;  3NO9 A;  1TJ7 A;  4NLE A;  1B8F A;  4C5R A;  2O6Y A;  4FLC A;  1DCN A;  1KQ7 A;  4ADM A;  1TJV A;  1TJU A;  1K62 A;  1HY0 A;  2PTS A;  3E04 A;  3R6V A;  1GK3 A;  5EYV A;  3OCE A;  1XWO A;  2O7B A;  1J3U A;  1C3C A;  2FUS A;  2J91 A;  2OHY A;  4MX2 A;  2QVE A;  1K7W A;  1YFM A;  1T6P A;  1Q5N A;  1U15 A;  5F92 A;  1JSW A;  3KDY A;  3OCF A;  5EYT A;  3GTD A;  1U16 A;  4APA A;  1YIS A;  3QBP A;  4BAB A;  2NYN A;  1C3U A;  3TV2 A;  1FUQ A;  1AUW A;  4V2Q A;  4HGV A;  2PTR A;  1VDK A;  3C8T A;  4BAA A;  1HY1 A;  3CZO A;  1GKJ A;  3KDZ A;  4EEI A;  2NYF A;  1TJW A;  5F91 A;  3RRP A;  1FUO A;  2O7D A;  4APB A;  4NSL A;  1T6J A;  2O7F A;  4C6G A;  1I0A A;  2PFM A;  1FUP A;  1W27 A;  4V2R A;  4FFX A;  2X75 A;  1RE5 A;  5D6B A;  3R6Y A;  2O78 A;  2PTQ A;  4ADL A;  1YFE A;  2HVG A;  2VD6 A;  4C5S A;  3NZ4 A;  3RD8 A;  3R6Q A;  2QGA B;  3UNV A;  2RJR A;  3BHG A;  1Y2M A;  4CQ5 A;  2E9F A;  1FUR A;  1DOF A;  2YII A;  4C5U A;  4EFC A;  1EB4 A;  1GKM A;  1GK2 A;  3GZH A;  2RJS A; 
#chains in the Genus database with same CATH topology
 2O7E A;  5HW2 A;  3NO9 A;  1TJ7 A;  3GTP A;  4C2M A;  3LRD A;  2R92 A;  4NLE A;  4C5R A;  1B8F A;  2EZC A;  2O6Y A;  3H0G A;  3GTM A;  4FLC A;  3LR8 A;  1DCN A;  1KQ7 A;  3GTL A;  4ADM A;  1TJV A;  2O5J D;  4CEH A;  2AQL A;  1XLY A;  1TJU A;  1ZYM A;  1K62 A;  1I50 A;  2A6H D;  1HY0 A;  2K3N A;  2VUM A;  2PTS A;  2LPJ A;  3E04 A;  3R6V A;  2A69 D;  3U4Q A;  1GK3 A;  5EYV A;  3OCE A;  1XWO A;  1ZYR D;  3EZE A;  3CRV A;  5H8W A;  2MQA A;  2O7B A;  1C3C A;  1J3U A;  5IZ2 A;  2FUS A;  2J91 A;  2OHY A;  3LR2 A;  4MX2 A;  2QVE A;  1YNN D;  1K7W A;  1YFM A;  1T6P A;  1Q5N A;  1U15 A;  1R9T A;  5F92 A;  1JSW A;  2JA5 A;  2FIO A;  3KDY A;  3OCF A;  5EYT A;  3CQZ A;  3GTD A;  1XMC A;  1U16 A;  2F5J A;  4APA A;  1YIS A;  3EZB A;  3QBP A;  4BAB A;  1K83 A;  2NYN A;  1C3U A;  3TV2 A;  1FUQ A;  3CRW 1;  1TWC A;  1AUW A;  4FBS A;  1IW7 D;  4V2Q A;  2LTH A;  4HGV A;  2LKM B;  2PTR A;  1Y1V A;  2A68 D;  2FIP A;  2HWG A;  1TWG A;  2YU9 A;  2EZB A;  1TWH A;  2EZA A;  2BE5 D;  2VL7 A;  1VDK A;  3C8T A;  2NVX A;  3GTG A;  4BAA A;  1HY1 A;  3CZO A;  1SFO A;  1GKJ A;  3KDZ A;  3GTJ A;  1XL8 A;  4EEI A;  2NYF A;  3EZA A;  1TJW A;  2K3Q A;  2LPI A;  3U44 A;  2R7Z A;  5F91 A;  3RRP A;  2N3E A;  1FUO A;  2E2I A;  2N1D B;  1I3Q A;  2O7D A;  4APB A;  2VSF A;  4NSL A;  2MP0 A;  1T6J A;  2O7F A;  4C6G A;  1I0A A;  2PFM A;  1FUP A;  2X0P A;  1W27 A;  2LYI A;  4V2R A;  4FFX A;  1XMD A;  2MX9 A;  2X75 A;  1Y1W A;  5M0J A;  1RE5 A;  5D6B A;  3R6Y A;  1HQM D;  1YNJ D;  1WCM A;  1TWA A;  3GTK A;  2JA7 A;  2O78 A;  2PTQ A;  2FEN A;  1EZB A;  4QIW A;  4ADL A;  1YFE A;  2MX8 A;  3GTO A;  4CEJ A;  2HVG A;  2A6E D;  2VD6 A;  3LR6 A;  4C5S A;  3NZ4 A;  4A15 A;  2K3O A;  2HRO A;  3RD8 A;  3R6Q A;  2JA6 A;  2QGA B;  3UNV A;  2RJR A;  3BHG A;  2X0Q A;  1Y2M A;  1XL7 A;  2NVY A;  2X0O A;  4CQ5 A;  2Y0N A;  4WNL A;  2VK9 A;  1TWF A;  3FKI A;  5M0I A;  2FEL A;  1SMY D;  2E9F A;  1EZA A;  1FUR A;  2CW0 D;  2B63 A;  1DOF A;  2YII A;  4C5U A;  2R93 A;  4EFC A;  4CEI A;  3GTQ A;  1EB4 A;  1GKM A;  1GK2 A;  2E2H A;  3GZH A;  2RJS A;  1I6V D; 
#chains in the Genus database with same CATH homology
 2O7E A;  5HW2 A;  3NO9 A;  1TJ7 A;  4NLE A;  1B8F A;  4C5R A;  2O6Y A;  4FLC A;  1DCN A;  1KQ7 A;  4ADM A;  1TJV A;  1TJU A;  1K62 A;  1HY0 A;  2PTS A;  3E04 A;  3R6V A;  1GK3 A;  5EYV A;  3OCE A;  1XWO A;  2O7B A;  1J3U A;  1C3C A;  2FUS A;  2J91 A;  2OHY A;  4MX2 A;  2QVE A;  1K7W A;  1YFM A;  1T6P A;  1Q5N A;  1U15 A;  5F92 A;  1JSW A;  3KDY A;  3OCF A;  5EYT A;  3GTD A;  1U16 A;  4APA A;  1YIS A;  3QBP A;  4BAB A;  2NYN A;  1C3U A;  3TV2 A;  1FUQ A;  1AUW A;  4V2Q A;  4HGV A;  2PTR A;  1VDK A;  3C8T A;  4BAA A;  1HY1 A;  3CZO A;  1GKJ A;  3KDZ A;  4EEI A;  2NYF A;  1TJW A;  5F91 A;  3RRP A;  1FUO A;  2O7D A;  4APB A;  4NSL A;  1T6J A;  2O7F A;  4C6G A;  1I0A A;  2PFM A;  1FUP A;  1W27 A;  4V2R A;  4FFX A;  2X75 A;  1RE5 A;  5D6B A;  3R6Y A;  2O78 A;  2PTQ A;  4ADL A;  1YFE A;  2HVG A;  2VD6 A;  4C5S A;  3NZ4 A;  3RD8 A;  3R6Q A;  2QGA B;  3UNV A;  2RJR A;  3BHG A;  1Y2M A;  4CQ5 A;  2E9F A;  1FUR A;  1DOF A;  2YII A;  4C5U A;  4EFC A;  1EB4 A;  1GKM A;  1GK2 A;  3GZH A;  2RJS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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