4BAAA

Redesign of a phenylalanine aminomutase into a beta-phenylalanine ammonia lyase
Total Genus 245
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
245
sequence length
667
structure length
635
Chain Sequence
SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIYGVTTGFGACSSSRTNRLSELQESLIRCLLAGVFTDELPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHTLVDRLAEFEKRLSDRLENEMTAVRVLYERIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Redesign of a Phenylalanine Aminomutase Into a Phenylalanine Ammonia Lyase
rcsb
molecule keywords PHENYLALANINE AMMONIA-LYASE
source organism Taxus wallichiana var. chinensis
molecule tags Lyase
total genus 245
structure length 635
sequence length 667
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2012-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4baaA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4baaA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4baaA02
2NYNA 1Q5NA 2O7EA 4HGVA 2J91A 4APAA 2VD6A 2PTSA 2O7DA 3UNVA 1YFMA 4C5UA 2PFMA 1DOFA 4C5SA 3BHGA 1HY1A 4CQ5A 1FUOA 1T6JA 2QVEA 1DCNA 3OCEA 2PTQA 1HY0A 3NO9A 3KDZA 1I0AA 2O6YA 2OHYA 1YISA 3RD8A 4EEIA 3R6QA 3QBPA 1TJWA 2HVGA 4BABA 1W27A 2O78A 4ADMA 1TJ7A 4ADLA 1FUPA 2RJSA 1TJUA 1GK2A 2X75A 3RRPA 1EB4A 1FUQA 4V2RA 1K62A 2E9FA 4C6GA 1GK3A 1KQ7A 3C8TA 1U15A 1AUWA 3TV2A 1B8FA 1VDKA 3KDYA 3GTDA 4FFXA 4FLCA 5F91A 2O7FA 3CZOA 5F92A 1K7WA 3GZHA 1Y2MA 4C5RA 1JSWA 5EYVA 2RJRA 1C3UA 1XWOA 2FUSA 4APBA 4NSLA 3E04A 5HW2A 1J3UA 5EYTA 3OCFA 4EFCA 1U16A 3R6VA 1GKMA 2O7BA 1TJVA 2NYFA 4V2QA 1C3CA 3R6YA 2YIIA 4MX2A 1T6PA 3NZ4A 2PTRA 1FURA 1GKJA 2QGAB 5D6BA 1YFEA 4BAAA 1RE5A 4NLEA
chains in the Genus database with same CATH superfamily
2NYNA 3FKIA 1Q5NA 2O7EA 4HGVA 2VK9A 1TWCA 2B63A 1Y1VA 2J91A 4APAA 1XL8A 3LR2A 2VD6A 3EZAA 2FIOA 2PTSA 3GTOA 2O7DA 1SMYD 2E2HA 2HWGA 1ZYMA 3UNVA 2LTHA 1EZBA 4CEJA 2MQAA 3EZBA 1YFMA 4C5UA 1EZAA 2PFMA 3EZEA 1DOFA 2NVXA 2FENA 4C5SA 3BHGA 2EZCA 2R7ZA 1HY1A 1Y1WA 2F5JA 4CQ5A 3CRW1 1FUOA 1T6JA 2K3NA 2QVEA 1YNND 1DCNA 1I3QA 3OCEA 3U4QA 2PTQA 1HY0A 1R9TA 2MP0A 3NO9A 3KDZA 1HQMD 1I0AA 4WNLA 2FIPA 2O6YA 2OHYA 1YISA 3RD8A 4QIWA 2MX9A 3U44A 2EZBA 4EEIA 1WCMA 1SFOA 2O5JD 3R6QA 3QBPA 1TJWA 2HVGA 4BABA 2JA6A 1W27A 2EZAA 3LR8A 2O78A 4ADMA 2LYIA 1TJ7A 1XLYA 1XMCA 4ADLA 5M0JA 5IZ2A 3GTKA 1FUPA 2RJSA 2A6HD 1TJUA 1GK2A 2X75A 3RRPA 1ZYRD 2AQLA 4CEIA 2K3OA 1EB4A 1FUQA 4V2RA 3GTGA 1K62A 2JA5A 2VL7A 1TWAA 3H0GA 5H8WA 2E9FA 4C6GA 1GK3A 1KQ7A 3C8TA 1U15A 1AUWA 3CRVA 2R92A 2MX8A 3TV2A 2R93A 1B8FA 1VDKA 2LPJA 3KDYA 3GTDA 4FFXA 2FELA 2N3EA 2BE5D 4A15A 4FLCA 5F91A 2X0PA 1K83A 2O7FA 3CZOA 5F92A 2E2IA 2JA7A 1TWGA 4FBSA 1K7WA 3GZHA 1Y2MA 4C5RA 3CQZA 1JSWA 5EYVA 3GTLA 1YNJD 2CW0D 2HROA 5M0IA 2X0QA 2RJRA 2X0OA 1C3UA 1TWHA 4CEHA 1XWOA 2FUSA 2A6ED 4APBA 2VSFA 3E04A 4NSLA 3LR6A 5HW2A 1J3UA 1XMDA 5EYTA 1I6VD 2LKMB 3OCFA 4EFCA 3LRDA 1U16A 3R6VA 1GKMA 2O7BA 2A69D 4C2MA 2VUMA 1TJVA 2NYFA 4V2QA 3GTJA 1I50A 1C3CA 2Y0NA 2YIIA 3R6YA 4MX2A 1T6PA 1XL7A 3NZ4A 2PTRA 1FURA 3GTMA 2NVYA 2K3QA 1GKJA 2QGAB 2YU9A 2A68D 2LPIA 5D6BA 1YFEA 3GTQA 2N1DB 4BAAA 1IW7D 1RE5A 1TWFA 3GTPA 4NLEA
chains in the Genus database with same CATH topology
2NYNA 1Q5NA 2O7EA 4HGVA 2J91A 4APAA 2VD6A 2PTSA 2O7DA 3UNVA 1YFMA 4C5UA 2PFMA 1DOFA 4C5SA 3BHGA 1HY1A 4CQ5A 1FUOA 1T6JA 2QVEA 1DCNA 3OCEA 2PTQA 1HY0A 3NO9A 3KDZA 1I0AA 2O6YA 2OHYA 1YISA 3RD8A 4EEIA 3R6QA 3QBPA 1TJWA 2HVGA 4BABA 1W27A 2O78A 4ADMA 1TJ7A 4ADLA 1FUPA 2RJSA 1TJUA 1GK2A 2X75A 3RRPA 1EB4A 1FUQA 4V2RA 1K62A 2E9FA 4C6GA 1GK3A 1KQ7A 3C8TA 1U15A 1AUWA 3TV2A 1B8FA 1VDKA 3KDYA 3GTDA 4FFXA 4FLCA 5F91A 2O7FA 3CZOA 5F92A 1K7WA 3GZHA 1Y2MA 4C5RA 1JSWA 5EYVA 2RJRA 1C3UA 1XWOA 2FUSA 4APBA 4NSLA 3E04A 5HW2A 1J3UA 5EYTA 3OCFA 4EFCA 1U16A 3R6VA 1GKMA 2O7BA 1TJVA 2NYFA 4V2QA 1C3CA 3R6YA 2YIIA 4MX2A 1T6PA 3NZ4A 2PTRA 1FURA 1GKJA 2QGAB 5D6BA 1YFEA 4BAAA 1RE5A 4NLEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NYN A;  1Q5N A;  2O7E A;  4HGV A;  2J91 A;  4APA A;  2VD6 A;  2PTS A;  2O7D A;  3UNV A;  1YFM A;  4C5U A;  2PFM A;  1DOF A;  4C5S A;  3BHG A;  1HY1 A;  4CQ5 A;  1FUO A;  1T6J A;  2QVE A;  1DCN A;  3OCE A;  2PTQ A;  1HY0 A;  3NO9 A;  3KDZ A;  1I0A A;  2O6Y A;  2OHY A;  1YIS A;  3RD8 A;  4EEI A;  3R6Q A;  3QBP A;  1TJW A;  2HVG A;  4BAB A;  1W27 A;  2O78 A;  4ADM A;  1TJ7 A;  4ADL A;  1FUP A;  2RJS A;  1TJU A;  1GK2 A;  2X75 A;  3RRP A;  1EB4 A;  1FUQ A;  4V2R A;  1K62 A;  2E9F A;  4C6G A;  1GK3 A;  1KQ7 A;  3C8T A;  1U15 A;  1AUW A;  3TV2 A;  1B8F A;  1VDK A;  3KDY A;  3GTD A;  4FFX A;  4FLC A;  5F91 A;  2O7F A;  3CZO A;  5F92 A;  1K7W A;  3GZH A;  1Y2M A;  4C5R A;  1JSW A;  5EYV A;  2RJR A;  1C3U A;  1XWO A;  2FUS A;  4APB A;  4NSL A;  3E04 A;  5HW2 A;  1J3U A;  5EYT A;  3OCF A;  4EFC A;  1U16 A;  3R6V A;  1GKM A;  2O7B A;  1TJV A;  2NYF A;  4V2Q A;  1C3C A;  3R6Y A;  2YII A;  4MX2 A;  1T6P A;  3NZ4 A;  2PTR A;  1FUR A;  1GKJ A;  2QGA B;  5D6B A;  1YFE A;  4BAA A;  1RE5 A;  4NLE A; 
#chains in the Genus database with same CATH topology
 2NYN A;  3FKI A;  1Q5N A;  2O7E A;  4HGV A;  2VK9 A;  1TWC A;  2B63 A;  1Y1V A;  2J91 A;  4APA A;  1XL8 A;  3LR2 A;  2VD6 A;  3EZA A;  2FIO A;  2PTS A;  3GTO A;  2O7D A;  1SMY D;  2E2H A;  2HWG A;  1ZYM A;  3UNV A;  2LTH A;  1EZB A;  4CEJ A;  2MQA A;  3EZB A;  1YFM A;  4C5U A;  1EZA A;  2PFM A;  3EZE A;  1DOF A;  2NVX A;  2FEN A;  4C5S A;  3BHG A;  2EZC A;  2R7Z A;  1HY1 A;  1Y1W A;  2F5J A;  4CQ5 A;  3CRW 1;  1FUO A;  1T6J A;  2K3N A;  2QVE A;  1YNN D;  1DCN A;  1I3Q A;  3OCE A;  3U4Q A;  2PTQ A;  1HY0 A;  1R9T A;  2MP0 A;  3NO9 A;  3KDZ A;  1HQM D;  1I0A A;  4WNL A;  2FIP A;  2O6Y A;  2OHY A;  1YIS A;  3RD8 A;  4QIW A;  2MX9 A;  3U44 A;  2EZB A;  4EEI A;  1WCM A;  1SFO A;  2O5J D;  3R6Q A;  3QBP A;  1TJW A;  2HVG A;  4BAB A;  2JA6 A;  1W27 A;  2EZA A;  3LR8 A;  2O78 A;  4ADM A;  2LYI A;  1TJ7 A;  1XLY A;  1XMC A;  4ADL A;  5M0J A;  5IZ2 A;  3GTK A;  1FUP A;  2RJS A;  2A6H D;  1TJU A;  1GK2 A;  2X75 A;  3RRP A;  1ZYR D;  2AQL A;  4CEI A;  2K3O A;  1EB4 A;  1FUQ A;  4V2R A;  3GTG A;  1K62 A;  2JA5 A;  2VL7 A;  1TWA A;  3H0G A;  5H8W A;  2E9F A;  4C6G A;  1GK3 A;  1KQ7 A;  3C8T A;  1U15 A;  1AUW A;  3CRV A;  2R92 A;  2MX8 A;  3TV2 A;  2R93 A;  1B8F A;  1VDK A;  2LPJ A;  3KDY A;  3GTD A;  4FFX A;  2FEL A;  2N3E A;  2BE5 D;  4A15 A;  4FLC A;  5F91 A;  2X0P A;  1K83 A;  2O7F A;  3CZO A;  5F92 A;  2E2I A;  2JA7 A;  1TWG A;  4FBS A;  1K7W A;  3GZH A;  1Y2M A;  4C5R A;  3CQZ A;  1JSW A;  5EYV A;  3GTL A;  1YNJ D;  2CW0 D;  2HRO A;  5M0I A;  2X0Q A;  2RJR A;  2X0O A;  1C3U A;  1TWH A;  4CEH A;  1XWO A;  2FUS A;  2A6E D;  4APB A;  2VSF A;  3E04 A;  4NSL A;  3LR6 A;  5HW2 A;  1J3U A;  1XMD A;  5EYT A;  1I6V D;  2LKM B;  3OCF A;  4EFC A;  3LRD A;  1U16 A;  3R6V A;  1GKM A;  2O7B A;  2A69 D;  4C2M A;  2VUM A;  1TJV A;  2NYF A;  4V2Q A;  3GTJ A;  1I50 A;  1C3C A;  2Y0N A;  2YII A;  3R6Y A;  4MX2 A;  1T6P A;  1XL7 A;  3NZ4 A;  2PTR A;  1FUR A;  3GTM A;  2NVY A;  2K3Q A;  1GKJ A;  2QGA B;  2YU9 A;  2A68 D;  2LPI A;  5D6B A;  1YFE A;  3GTQ A;  2N1D B;  4BAA A;  1IW7 D;  1RE5 A;  1TWF A;  3GTP A;  4NLE A; 
#chains in the Genus database with same CATH homology
 2NYN A;  1Q5N A;  2O7E A;  4HGV A;  2J91 A;  4APA A;  2VD6 A;  2PTS A;  2O7D A;  3UNV A;  1YFM A;  4C5U A;  2PFM A;  1DOF A;  4C5S A;  3BHG A;  1HY1 A;  4CQ5 A;  1FUO A;  1T6J A;  2QVE A;  1DCN A;  3OCE A;  2PTQ A;  1HY0 A;  3NO9 A;  3KDZ A;  1I0A A;  2O6Y A;  2OHY A;  1YIS A;  3RD8 A;  4EEI A;  3R6Q A;  3QBP A;  1TJW A;  2HVG A;  4BAB A;  1W27 A;  2O78 A;  4ADM A;  1TJ7 A;  4ADL A;  1FUP A;  2RJS A;  1TJU A;  1GK2 A;  2X75 A;  3RRP A;  1EB4 A;  1FUQ A;  4V2R A;  1K62 A;  2E9F A;  4C6G A;  1GK3 A;  1KQ7 A;  3C8T A;  1U15 A;  1AUW A;  3TV2 A;  1B8F A;  1VDK A;  3KDY A;  3GTD A;  4FFX A;  4FLC A;  5F91 A;  2O7F A;  3CZO A;  5F92 A;  1K7W A;  3GZH A;  1Y2M A;  4C5R A;  1JSW A;  5EYV A;  2RJR A;  1C3U A;  1XWO A;  2FUS A;  4APB A;  4NSL A;  3E04 A;  5HW2 A;  1J3U A;  5EYT A;  3OCF A;  4EFC A;  1U16 A;  3R6V A;  1GKM A;  2O7B A;  1TJV A;  2NYF A;  4V2Q A;  1C3C A;  3R6Y A;  2YII A;  4MX2 A;  1T6P A;  3NZ4 A;  2PTR A;  1FUR A;  1GKJ A;  2QGA B;  5D6B A;  1YFE A;  4BAA A;  1RE5 A;  4NLE A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...