4BABA

Redesign of a phenylalanine aminomutase into a beta-phenylalanine ammonia lyase
Total Genus 230
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
230
sequence length
667
structure length
611
Chain Sequence
b'SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAESELQESLIRCLLAGVFTDELPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHDTLVDRLAEFRLENEMTAVRVLYEKVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Redesign of a Phenylalanine Aminomutase Into a Phenylalanine Ammonia Lyase
rcsb
molecule keywords PHENYLALANINE AMINOMUTASE
source organism Taxus wallichiana var. chinensis
molecule tags Lyase
total genus 230
structure length 611
sequence length 667
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2012-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4babA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4babA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4babA02
2RJRA 4FLCA 1Y2MA 4HGVA 4ADLA 2PTSA 3NO9A 3R6YA 1FUPA 1J3UA 1DCNA 2O6YA 2O7DA 1GK3A 2QVEA 1U16A 1RE5A 4MX2A 3GZHA 2OHYA 2O7BA 3KDZA 4ADMA 4CQ5A 1K7WA 1TJ7A 4V2QA 2O7FA 1VDKA 4C6GA 3R6VA 1B8FA 2RJSA 3TV2A 3CZOA 4C5UA 1TJVA 1C3CA 4BAAA 1I0AA 3BHGA 1TJWA 1HY1A 1Q5NA 4EFCA 4C5SA 2PTQA 2O78A 1AUWA 3QBPA 4NSLA 1FUOA 1JSWA 3UNVA 3R6QA 2NYFA 1GK2A 1GKJA 3RRPA 1W27A 5EYVA 1TJUA 2NYNA 2HVGA 1U15A 3OCEA 1EB4A 5EYTA 2VD6A 3GTDA 4C5RA 2X75A 1C3UA 2PFMA 1YFMA 5HW2A 4BABA 1FUQA 2E9FA 5F92A 1T6JA 1T6PA 5F91A 4EEIA 1XWOA 5D6BA 1DOFA 1YISA 3C8TA 3KDYA 4APAA 1YFEA 2PTRA 3OCFA 4NLEA 4V2RA 1K62A 4FFXA 4APBA 2FUSA 2QGAB 2J91A 1FURA 1KQ7A 1HY0A 3NZ4A 2O7EA 2YIIA 1GKMA 3E04A 3RD8A
chains in the Genus database with same CATH superfamily
1YNJD 2BE5D 2RJRA 3GTJA 4FLCA 1Y2MA 4HGVA 4ADLA 2PTSA 3NO9A 3R6YA 4CEIA 1FUPA 3LR6A 1J3UA 1DCNA 2O6YA 3EZEA 2A68D 2CW0D 1TWCA 3H0GA 2FENA 2O7DA 2MP0A 4FBSA 1GK3A 2QVEA 1U16A 2A69D 2MX8A 3LRDA 1RE5A 3EZBA 1K83A 4MX2A 2EZCA 3GTOA 1YNND 1XL7A 2B63A 2FELA 1ZYRD 2LTHA 2HWGA 2X0OA 4CEJA 2LPIA 2LKMB 2LPJA 3GZHA 2OHYA 1SFOA 2R93A 2AQLA 2K3QA 2O7BA 3KDZA 4ADMA 4CQ5A 1K7WA 1TJ7A 4QIWA 4V2QA 1TWAA 2EZBA 1VDKA 2O7FA 4C6GA 3R6VA 1B8FA 2RJSA 3TV2A 4A15A 1EZAA 2N3EA 3GTLA 3CZOA 4C5UA 1TJVA 4BAAA 1C3CA 1XMDA 1I0AA 3BHGA 1XL8A 1IW7D 2VK9A 3FKIA 2X0QA 4C2MA 1I50A 1R9TA 1HY1A 1TJWA 1Q5NA 2O5JD 2VSFA 4EFCA 4C5SA 2PTQA 2O78A 1AUWA 3QBPA 4NSLA 2N1DB 2K3NA 1FUOA 1JSWA 3UNVA 3R6QA 5H8WA 2MQAA 2Y0NA 2NYFA 1GK2A 3LR2A 2A6ED 3GTPA 2E2HA 1GKJA 1XMCA 3EZAA 3RRPA 1W27A 5EYVA 1WCMA 1TWGA 1TWHA 1TJUA 2HVGA 1SMYD 1U15A 2NYNA 3OCEA 4WNLA 1EB4A 3GTGA 5EYTA 2HROA 2VD6A 2E2IA 3GTDA 4C5RA 2FIPA 2X75A 1C3UA 2PFMA 1YFMA 5HW2A 2R92A 3LR8A 4BABA 1FUQA 3CQZA 2E9FA 2JA5A 2R7ZA 2X0PA 1I3QA 5F92A 1T6JA 2MX9A 1T6PA 5F91A 3CRVA 4EEIA 1XWOA 5D6BA 5M0IA 1DOFA 3CRW1 3GTMA 2FIOA 1YISA 3U4QA 3C8TA 2YU9A 3KDYA 4APAA 1ZYMA 1Y1WA 1YFEA 2A6HD 5M0JA 2LYIA 3GTQA 2JA7A 1HQMD 1TWFA 2PTRA 3GTKA 2F5JA 3OCFA 4NLEA 4V2RA 4CEHA 1K62A 1EZBA 4FFXA 2VUMA 4APBA 3U44A 2FUSA 2QGAB 2J91A 2NVYA 2JA6A 1FURA 1KQ7A 1I6VD 2NVXA 1Y1VA 1HY0A 5IZ2A 2EZAA 3NZ4A 1XLYA 2O7EA 2YIIA 1GKMA 2VL7A 2K3OA 3E04A 3RD8A
chains in the Genus database with same CATH topology
2RJRA 4FLCA 1Y2MA 4HGVA 4ADLA 2PTSA 3NO9A 3R6YA 1FUPA 1J3UA 1DCNA 2O6YA 2O7DA 1GK3A 2QVEA 1U16A 1RE5A 4MX2A 3GZHA 2OHYA 2O7BA 3KDZA 4ADMA 4CQ5A 1K7WA 1TJ7A 4V2QA 2O7FA 1VDKA 4C6GA 3R6VA 1B8FA 2RJSA 3TV2A 3CZOA 4C5UA 1TJVA 1C3CA 4BAAA 1I0AA 3BHGA 1TJWA 1HY1A 1Q5NA 4EFCA 4C5SA 2PTQA 2O78A 1AUWA 3QBPA 4NSLA 1FUOA 1JSWA 3UNVA 3R6QA 2NYFA 1GK2A 1GKJA 3RRPA 1W27A 5EYVA 1TJUA 2NYNA 2HVGA 1U15A 3OCEA 1EB4A 5EYTA 2VD6A 3GTDA 4C5RA 2X75A 1C3UA 2PFMA 1YFMA 5HW2A 4BABA 1FUQA 2E9FA 5F92A 1T6JA 1T6PA 5F91A 4EEIA 1XWOA 5D6BA 1DOFA 1YISA 3C8TA 3KDYA 4APAA 1YFEA 2PTRA 3OCFA 4NLEA 4V2RA 1K62A 4FFXA 4APBA 2FUSA 2QGAB 2J91A 1FURA 1KQ7A 1HY0A 3NZ4A 2O7EA 2YIIA 1GKMA 3E04A 3RD8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RJR A;  4FLC A;  1Y2M A;  4HGV A;  4ADL A;  2PTS A;  3NO9 A;  3R6Y A;  1FUP A;  1J3U A;  1DCN A;  2O6Y A;  2O7D A;  1GK3 A;  2QVE A;  1U16 A;  1RE5 A;  4MX2 A;  3GZH A;  2OHY A;  2O7B A;  3KDZ A;  4ADM A;  4CQ5 A;  1K7W A;  1TJ7 A;  4V2Q A;  2O7F A;  1VDK A;  4C6G A;  3R6V A;  1B8F A;  2RJS A;  3TV2 A;  3CZO A;  4C5U A;  1TJV A;  1C3C A;  4BAA A;  1I0A A;  3BHG A;  1TJW A;  1HY1 A;  1Q5N A;  4EFC A;  4C5S A;  2PTQ A;  2O78 A;  1AUW A;  3QBP A;  4NSL A;  1FUO A;  1JSW A;  3UNV A;  3R6Q A;  2NYF A;  1GK2 A;  1GKJ A;  3RRP A;  1W27 A;  5EYV A;  1TJU A;  2NYN A;  2HVG A;  1U15 A;  3OCE A;  1EB4 A;  5EYT A;  2VD6 A;  3GTD A;  4C5R A;  2X75 A;  1C3U A;  2PFM A;  1YFM A;  5HW2 A;  4BAB A;  1FUQ A;  2E9F A;  5F92 A;  1T6J A;  1T6P A;  5F91 A;  4EEI A;  1XWO A;  5D6B A;  1DOF A;  1YIS A;  3C8T A;  3KDY A;  4APA A;  1YFE A;  2PTR A;  3OCF A;  4NLE A;  4V2R A;  1K62 A;  4FFX A;  4APB A;  2FUS A;  2QGA B;  2J91 A;  1FUR A;  1KQ7 A;  1HY0 A;  3NZ4 A;  2O7E A;  2YII A;  1GKM A;  3E04 A;  3RD8 A; 
#chains in the Genus database with same CATH topology
 1YNJ D;  2BE5 D;  2RJR A;  3GTJ A;  4FLC A;  1Y2M A;  4HGV A;  4ADL A;  2PTS A;  3NO9 A;  3R6Y A;  4CEI A;  1FUP A;  3LR6 A;  1J3U A;  1DCN A;  2O6Y A;  3EZE A;  2A68 D;  2CW0 D;  1TWC A;  3H0G A;  2FEN A;  2O7D A;  2MP0 A;  4FBS A;  1GK3 A;  2QVE A;  1U16 A;  2A69 D;  2MX8 A;  3LRD A;  1RE5 A;  3EZB A;  1K83 A;  4MX2 A;  2EZC A;  3GTO A;  1YNN D;  1XL7 A;  2B63 A;  2FEL A;  1ZYR D;  2LTH A;  2HWG A;  2X0O A;  4CEJ A;  2LPI A;  2LKM B;  2LPJ A;  3GZH A;  2OHY A;  1SFO A;  2R93 A;  2AQL A;  2K3Q A;  2O7B A;  3KDZ A;  4ADM A;  4CQ5 A;  1K7W A;  1TJ7 A;  4QIW A;  4V2Q A;  1TWA A;  2EZB A;  1VDK A;  2O7F A;  4C6G A;  3R6V A;  1B8F A;  2RJS A;  3TV2 A;  4A15 A;  1EZA A;  2N3E A;  3GTL A;  3CZO A;  4C5U A;  1TJV A;  4BAA A;  1C3C A;  1XMD A;  1I0A A;  3BHG A;  1XL8 A;  1IW7 D;  2VK9 A;  3FKI A;  2X0Q A;  4C2M A;  1I50 A;  1R9T A;  1HY1 A;  1TJW A;  1Q5N A;  2O5J D;  2VSF A;  4EFC A;  4C5S A;  2PTQ A;  2O78 A;  1AUW A;  3QBP A;  4NSL A;  2N1D B;  2K3N A;  1FUO A;  1JSW A;  3UNV A;  3R6Q A;  5H8W A;  2MQA A;  2Y0N A;  2NYF A;  1GK2 A;  3LR2 A;  2A6E D;  3GTP A;  2E2H A;  1GKJ A;  1XMC A;  3EZA A;  3RRP A;  1W27 A;  5EYV A;  1WCM A;  1TWG A;  1TWH A;  1TJU A;  2HVG A;  1SMY D;  1U15 A;  2NYN A;  3OCE A;  4WNL A;  1EB4 A;  3GTG A;  5EYT A;  2HRO A;  2VD6 A;  2E2I A;  3GTD A;  4C5R A;  2FIP A;  2X75 A;  1C3U A;  2PFM A;  1YFM A;  5HW2 A;  2R92 A;  3LR8 A;  4BAB A;  1FUQ A;  3CQZ A;  2E9F A;  2JA5 A;  2R7Z A;  2X0P A;  1I3Q A;  5F92 A;  1T6J A;  2MX9 A;  1T6P A;  5F91 A;  3CRV A;  4EEI A;  1XWO A;  5D6B A;  5M0I A;  1DOF A;  3CRW 1;  3GTM A;  2FIO A;  1YIS A;  3U4Q A;  3C8T A;  2YU9 A;  3KDY A;  4APA A;  1ZYM A;  1Y1W A;  1YFE A;  2A6H D;  5M0J A;  2LYI A;  3GTQ A;  2JA7 A;  1HQM D;  1TWF A;  2PTR A;  3GTK A;  2F5J A;  3OCF A;  4NLE A;  4V2R A;  4CEH A;  1K62 A;  1EZB A;  4FFX A;  2VUM A;  4APB A;  3U44 A;  2FUS A;  2QGA B;  2J91 A;  2NVY A;  2JA6 A;  1FUR A;  1KQ7 A;  1I6V D;  2NVX A;  1Y1V A;  1HY0 A;  5IZ2 A;  2EZA A;  3NZ4 A;  1XLY A;  2O7E A;  2YII A;  1GKM A;  2VL7 A;  2K3O A;  3E04 A;  3RD8 A; 
#chains in the Genus database with same CATH homology
 2RJR A;  4FLC A;  1Y2M A;  4HGV A;  4ADL A;  2PTS A;  3NO9 A;  3R6Y A;  1FUP A;  1J3U A;  1DCN A;  2O6Y A;  2O7D A;  1GK3 A;  2QVE A;  1U16 A;  1RE5 A;  4MX2 A;  3GZH A;  2OHY A;  2O7B A;  3KDZ A;  4ADM A;  4CQ5 A;  1K7W A;  1TJ7 A;  4V2Q A;  2O7F A;  1VDK A;  4C6G A;  3R6V A;  1B8F A;  2RJS A;  3TV2 A;  3CZO A;  4C5U A;  1TJV A;  1C3C A;  4BAA A;  1I0A A;  3BHG A;  1TJW A;  1HY1 A;  1Q5N A;  4EFC A;  4C5S A;  2PTQ A;  2O78 A;  1AUW A;  3QBP A;  4NSL A;  1FUO A;  1JSW A;  3UNV A;  3R6Q A;  2NYF A;  1GK2 A;  1GKJ A;  3RRP A;  1W27 A;  5EYV A;  1TJU A;  2NYN A;  2HVG A;  1U15 A;  3OCE A;  1EB4 A;  5EYT A;  2VD6 A;  3GTD A;  4C5R A;  2X75 A;  1C3U A;  2PFM A;  1YFM A;  5HW2 A;  4BAB A;  1FUQ A;  2E9F A;  5F92 A;  1T6J A;  1T6P A;  5F91 A;  4EEI A;  1XWO A;  5D6B A;  1DOF A;  1YIS A;  3C8T A;  3KDY A;  4APA A;  1YFE A;  2PTR A;  3OCF A;  4NLE A;  4V2R A;  1K62 A;  4FFX A;  4APB A;  2FUS A;  2QGA B;  2J91 A;  1FUR A;  1KQ7 A;  1HY0 A;  3NZ4 A;  2O7E A;  2YII A;  1GKM A;  3E04 A;  3RD8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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