4BABA

Redesign of a phenylalanine aminomutase into a beta-phenylalanine ammonia lyase
Total Genus 230
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
230
sequence length
667
structure length
611
Chain Sequence
SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAESELQESLIRCLLAGVFTDELPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHDTLVDRLAEFRLENEMTAVRVLYEKVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Taxus wallichiana var. chinensis
publication title Redesign of a Phenylalanine Aminomutase Into a Phenylalanine Ammonia Lyase
rcsb
molecule keywords PHENYLALANINE AMINOMUTASE
total genus 230
structure length 611
sequence length 667
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2012-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4babA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4babA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4babA02
1C3UA 2FUSA 1DOFA 5HW2A 2O7BA 3C8TA 2PTRA 2O7FA 3TV2A 2PFMA 4NSLA 1FURA 1TJWA 1YFEA 1RE5A 2VD6A 4EEIA 1GK3A 1TJVA 3R6YA 4V2QA 4V2RA 2RJSA 1DCNA 3BHGA 1GKMA 3E04A 4C5RA 1VDKA 2O7DA 5EYVA 1EB4A 2RJRA 4C6GA 1FUOA 1YFMA 2HVGA 4ADLA 3QBPA 2X75A 3GZHA 1K62A 1B8FA 5F92A 3NO9A 3CZOA 2O6YA 1J3UA 1GKJA 3KDYA 3R6QA 1KQ7A 3RRPA 1W27A 1K7WA 1I0AA 1C3CA 2E9FA 4HGVA 3OCEA 1JSWA 1Y2MA 2O78A 5F91A 1TJ7A 4ADMA 3UNVA 1HY0A 5EYTA 3KDZA 3GTDA 1AUWA 3OCFA 2PTQA 4BABA 4APBA 1HY1A 4BAAA 2NYFA 1GK2A 1FUQA 2QGAB 4CQ5A 2OHYA 1Q5NA 2YIIA 1U16A 4MX2A 1T6PA 1TJUA 4EFCA 3NZ4A 4NLEA 1FUPA 1YISA 4C5UA 3R6VA 2NYNA 4FLCA 2J91A 2O7EA 5D6BA 3RD8A 1T6JA 1XWOA 4FFXA 2QVEA 4APAA 1U15A 2PTSA 4C5SA
chains in the Genus database with same CATH superfamily
1C3UA 2FUSA 1DOFA 5HW2A 2CW0D 2O7BA 2B63A 2EZAA 3C8TA 2K3OA 2X0OA 2PTRA 5M0IA 2EZBA 2O7FA 3TV2A 2PFMA 2A68D 4NSLA 1FURA 2E2IA 1Y1WA 1TJWA 1YFEA 2MX8A 3U44A 1RE5A 2LPIA 2K3QA 2VD6A 4EEIA 5IZ2A 2F5JA 2FIOA 1GK3A 5H8WA 1TJVA 2JA5A 3R6YA 3FKIA 2BE5D 4V2QA 4V2RA 3H0GA 2A6ED 2RJSA 1DCNA 3LR2A 2A69D 3BHGA 2X0QA 2AQLA 1GKMA 3E04A 2FELA 1XMCA 4C5RA 3GTQA 1VDKA 2O7DA 4A15A 1TWCA 1TWHA 2MP0A 2O5JD 5EYVA 1EB4A 2RJRA 4C6GA 1FUOA 3EZBA 1SFOA 1YFMA 2HVGA 4ADLA 3QBPA 2X0PA 2HWGA 2K3NA 2R93A 2X75A 3GZHA 2EZCA 1K83A 1K62A 4FBSA 2NVYA 1B8FA 4C2MA 3NO9A 2YU9A 3CZOA 2O6YA 5F92A 2FIPA 2LYIA 1J3UA 2Y0NA 1GKJA 3KDYA 3R6QA 1EZAA 1KQ7A 1I50A 3RRPA 1W27A 1XMDA 2MQAA 1TWFA 3GTOA 1K7WA 2JA6A 1I0AA 2FENA 1C3CA 3EZAA 3GTLA 4CEJA 2E9FA 4HGVA 3OCEA 1JSWA 1Y2MA 2N1DB 1TWAA 2VSFA 2O78A 5F91A 1TJ7A 4ADMA 1ZYMA 3UNVA 1HY0A 5EYTA 4WNLA 1XL7A 1HQMD 2VUMA 3KDZA 3GTDA 1AUWA 2LKMB 2R92A 1XL8A 3OCFA 2N3EA 2PTQA 4BABA 1ZYRD 4CEIA 4APBA 1HY1A 1SMYD 4BAAA 2NYFA 3CQZA 3GTKA 1WCMA 1GK2A 2LTHA 2LPJA 2E2HA 1FUQA 2NVXA 4CQ5A 2QGAB 2OHYA 1Y1VA 1I3QA 1EZBA 1Q5NA 5M0JA 1YNND 2YIIA 1U16A 4MX2A 1T6PA 1TJUA 1XLYA 4EFCA 3CRVA 3CRW1 3NZ4A 3GTGA 3EZEA 3LR8A 2VL7A 4NLEA 1R9TA 1FUPA 3GTMA 4QIWA 1YISA 4C5UA 3R6VA 1TWGA 2NYNA 2A6HD 4FLCA 2HROA 3GTPA 2J91A 4CEHA 2JA7A 2O7EA 1I6VD 3U4QA 5D6BA 3RD8A 1T6JA 1XWOA 4FFXA 3GTJA 1IW7D 2VK9A 2QVEA 1U15A 4APAA 1YNJD 2MX9A 2PTSA 4C5SA 3LRDA 3LR6A 2R7ZA
chains in the Genus database with same CATH topology
1C3UA 2FUSA 1DOFA 5HW2A 2O7BA 3C8TA 2PTRA 2O7FA 3TV2A 2PFMA 4NSLA 1FURA 1TJWA 1YFEA 1RE5A 2VD6A 4EEIA 1GK3A 1TJVA 3R6YA 4V2QA 4V2RA 2RJSA 1DCNA 3BHGA 1GKMA 3E04A 4C5RA 1VDKA 2O7DA 5EYVA 1EB4A 2RJRA 4C6GA 1FUOA 1YFMA 2HVGA 4ADLA 3QBPA 2X75A 3GZHA 1K62A 1B8FA 5F92A 3NO9A 3CZOA 2O6YA 1J3UA 1GKJA 3KDYA 3R6QA 1KQ7A 3RRPA 1W27A 1K7WA 1I0AA 1C3CA 2E9FA 4HGVA 3OCEA 1JSWA 1Y2MA 2O78A 5F91A 1TJ7A 4ADMA 3UNVA 1HY0A 5EYTA 3KDZA 3GTDA 1AUWA 3OCFA 2PTQA 4BABA 4APBA 1HY1A 4BAAA 2NYFA 1GK2A 1FUQA 2QGAB 4CQ5A 2OHYA 1Q5NA 2YIIA 1U16A 4MX2A 1T6PA 1TJUA 4EFCA 3NZ4A 4NLEA 1FUPA 1YISA 4C5UA 3R6VA 2NYNA 4FLCA 2J91A 2O7EA 5D6BA 3RD8A 1T6JA 1XWOA 4FFXA 2QVEA 4APAA 1U15A 2PTSA 4C5SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3U A;  2FUS A;  1DOF A;  5HW2 A;  2O7B A;  3C8T A;  2PTR A;  2O7F A;  3TV2 A;  2PFM A;  4NSL A;  1FUR A;  1TJW A;  1YFE A;  1RE5 A;  2VD6 A;  4EEI A;  1GK3 A;  1TJV A;  3R6Y A;  4V2Q A;  4V2R A;  2RJS A;  1DCN A;  3BHG A;  1GKM A;  3E04 A;  4C5R A;  1VDK A;  2O7D A;  5EYV A;  1EB4 A;  2RJR A;  4C6G A;  1FUO A;  1YFM A;  2HVG A;  4ADL A;  3QBP A;  2X75 A;  3GZH A;  1K62 A;  1B8F A;  5F92 A;  3NO9 A;  3CZO A;  2O6Y A;  1J3U A;  1GKJ A;  3KDY A;  3R6Q A;  1KQ7 A;  3RRP A;  1W27 A;  1K7W A;  1I0A A;  1C3C A;  2E9F A;  4HGV A;  3OCE A;  1JSW A;  1Y2M A;  2O78 A;  5F91 A;  1TJ7 A;  4ADM A;  3UNV A;  1HY0 A;  5EYT A;  3KDZ A;  3GTD A;  1AUW A;  3OCF A;  2PTQ A;  4BAB A;  4APB A;  1HY1 A;  4BAA A;  2NYF A;  1GK2 A;  1FUQ A;  2QGA B;  4CQ5 A;  2OHY A;  1Q5N A;  2YII A;  1U16 A;  4MX2 A;  1T6P A;  1TJU A;  4EFC A;  3NZ4 A;  4NLE A;  1FUP A;  1YIS A;  4C5U A;  3R6V A;  2NYN A;  4FLC A;  2J91 A;  2O7E A;  5D6B A;  3RD8 A;  1T6J A;  1XWO A;  4FFX A;  2QVE A;  4APA A;  1U15 A;  2PTS A;  4C5S A; 
#chains in the Genus database with same CATH topology
 1C3U A;  2FUS A;  1DOF A;  5HW2 A;  2CW0 D;  2O7B A;  2B63 A;  2EZA A;  3C8T A;  2K3O A;  2X0O A;  2PTR A;  5M0I A;  2EZB A;  2O7F A;  3TV2 A;  2PFM A;  2A68 D;  4NSL A;  1FUR A;  2E2I A;  1Y1W A;  1TJW A;  1YFE A;  2MX8 A;  3U44 A;  1RE5 A;  2LPI A;  2K3Q A;  2VD6 A;  4EEI A;  5IZ2 A;  2F5J A;  2FIO A;  1GK3 A;  5H8W A;  1TJV A;  2JA5 A;  3R6Y A;  3FKI A;  2BE5 D;  4V2Q A;  4V2R A;  3H0G A;  2A6E D;  2RJS A;  1DCN A;  3LR2 A;  2A69 D;  3BHG A;  2X0Q A;  2AQL A;  1GKM A;  3E04 A;  2FEL A;  1XMC A;  4C5R A;  3GTQ A;  1VDK A;  2O7D A;  4A15 A;  1TWC A;  1TWH A;  2MP0 A;  2O5J D;  5EYV A;  1EB4 A;  2RJR A;  4C6G A;  1FUO A;  3EZB A;  1SFO A;  1YFM A;  2HVG A;  4ADL A;  3QBP A;  2X0P A;  2HWG A;  2K3N A;  2R93 A;  2X75 A;  3GZH A;  2EZC A;  1K83 A;  1K62 A;  4FBS A;  2NVY A;  1B8F A;  4C2M A;  3NO9 A;  2YU9 A;  3CZO A;  2O6Y A;  5F92 A;  2FIP A;  2LYI A;  1J3U A;  2Y0N A;  1GKJ A;  3KDY A;  3R6Q A;  1EZA A;  1KQ7 A;  1I50 A;  3RRP A;  1W27 A;  1XMD A;  2MQA A;  1TWF A;  3GTO A;  1K7W A;  2JA6 A;  1I0A A;  2FEN A;  1C3C A;  3EZA A;  3GTL A;  4CEJ A;  2E9F A;  4HGV A;  3OCE A;  1JSW A;  1Y2M A;  2N1D B;  1TWA A;  2VSF A;  2O78 A;  5F91 A;  1TJ7 A;  4ADM A;  1ZYM A;  3UNV A;  1HY0 A;  5EYT A;  4WNL A;  1XL7 A;  1HQM D;  2VUM A;  3KDZ A;  3GTD A;  1AUW A;  2LKM B;  2R92 A;  1XL8 A;  3OCF A;  2N3E A;  2PTQ A;  4BAB A;  1ZYR D;  4CEI A;  4APB A;  1HY1 A;  1SMY D;  4BAA A;  2NYF A;  3CQZ A;  3GTK A;  1WCM A;  1GK2 A;  2LTH A;  2LPJ A;  2E2H A;  1FUQ A;  2NVX A;  4CQ5 A;  2QGA B;  2OHY A;  1Y1V A;  1I3Q A;  1EZB A;  1Q5N A;  5M0J A;  1YNN D;  2YII A;  1U16 A;  4MX2 A;  1T6P A;  1TJU A;  1XLY A;  4EFC A;  3CRV A;  3CRW 1;  3NZ4 A;  3GTG A;  3EZE A;  3LR8 A;  2VL7 A;  4NLE A;  1R9T A;  1FUP A;  3GTM A;  4QIW A;  1YIS A;  4C5U A;  3R6V A;  1TWG A;  2NYN A;  2A6H D;  4FLC A;  2HRO A;  3GTP A;  2J91 A;  4CEH A;  2JA7 A;  2O7E A;  1I6V D;  3U4Q A;  5D6B A;  3RD8 A;  1T6J A;  1XWO A;  4FFX A;  3GTJ A;  1IW7 D;  2VK9 A;  2QVE A;  1U15 A;  4APA A;  1YNJ D;  2MX9 A;  2PTS A;  4C5S A;  3LRD A;  3LR6 A;  2R7Z A; 
#chains in the Genus database with same CATH homology
 1C3U A;  2FUS A;  1DOF A;  5HW2 A;  2O7B A;  3C8T A;  2PTR A;  2O7F A;  3TV2 A;  2PFM A;  4NSL A;  1FUR A;  1TJW A;  1YFE A;  1RE5 A;  2VD6 A;  4EEI A;  1GK3 A;  1TJV A;  3R6Y A;  4V2Q A;  4V2R A;  2RJS A;  1DCN A;  3BHG A;  1GKM A;  3E04 A;  4C5R A;  1VDK A;  2O7D A;  5EYV A;  1EB4 A;  2RJR A;  4C6G A;  1FUO A;  1YFM A;  2HVG A;  4ADL A;  3QBP A;  2X75 A;  3GZH A;  1K62 A;  1B8F A;  5F92 A;  3NO9 A;  3CZO A;  2O6Y A;  1J3U A;  1GKJ A;  3KDY A;  3R6Q A;  1KQ7 A;  3RRP A;  1W27 A;  1K7W A;  1I0A A;  1C3C A;  2E9F A;  4HGV A;  3OCE A;  1JSW A;  1Y2M A;  2O78 A;  5F91 A;  1TJ7 A;  4ADM A;  3UNV A;  1HY0 A;  5EYT A;  3KDZ A;  3GTD A;  1AUW A;  3OCF A;  2PTQ A;  4BAB A;  4APB A;  1HY1 A;  4BAA A;  2NYF A;  1GK2 A;  1FUQ A;  2QGA B;  4CQ5 A;  2OHY A;  1Q5N A;  2YII A;  1U16 A;  4MX2 A;  1T6P A;  1TJU A;  4EFC A;  3NZ4 A;  4NLE A;  1FUP A;  1YIS A;  4C5U A;  3R6V A;  2NYN A;  4FLC A;  2J91 A;  2O7E A;  5D6B A;  3RD8 A;  1T6J A;  1XWO A;  4FFX A;  2QVE A;  4APA A;  1U15 A;  2PTS A;  4C5S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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