4BBDA

The structure of vaccinia virus n1 r58y mutant
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
114
structure length
114
Chain Sequence
MRTLLIRYILWRNDNDQTYYNDDFKKLMLLDELVDDGDVSTLIKNMRMTLSDGPLLDYLNQPVNNIEDAKRMIAISAKVARDIGERSEIRWEESFTILFRMIETYFDDLMIDLY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords N1L
publication title Inhibition of Apoptosis and NF-kappaB Activation by Vaccinia Protein N1 Occur Via Distinct Binding Surfaces and Make Different Contributions to Virulence.
pubmed doi rcsb
source organism Vaccinia virus
total genus 44
structure length 114
sequence length 114
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06227 Poxvirus dsDNA Poxvirus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.20 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Apoptosis Regulator Bcl-x 4bbdA00
2VVXA 4BBCA 2VVYA 2VVWA 2K36A 4BBBA 2I39A 3JRVA 4BBDA 4LQKA 4M0SA 2UXEA
chains in the Genus database with same CATH superfamily
2JCNA 2LR1A 4K5BC 4BBBA 2I39A 1G5MA 5IEZA 4YJ4A 3KZ0A 2ME8A 2MEJA 4U2UA 2MHSA 4UF1A 4ZBFA 2XPXA 4BD6A 4HW2A 4BPJA 4UF2A 1AF3A 5FDRA 1OHUA 5C3FA 3MQPA 4WMRA 1YSNA 4ZBIA 4BBDA 2W3LA 4MI8A 3D7VA 3BL2A 2ABOA 2KBWA 4ZIIA 3WIXA 4BD7A 2VTYA 2WH6A 4D2LA 1YSGA 4QNQA 2A5YA 4YK9A 2VVYA 3KJ1A 5KU9A 2B48A 4ZIFA 5IF4A 2JBXA 4BBCA 1DDBA 4BDUA 1R2DA 1BXLA 3QBRA 3WIYA 3IIHA 2O2MA 3MK8A 4B4SA 3KJ0A 1PQ1A 3JRVA 5FMIA 1YSWA 4ZIEA 4M0SA 3IHDA 1GJHA 2O21A 2PQKA 2IMTA 5C6HA 4ZIHA 1PQ0A 2JM6B 1Q59A 5KTGA 1MAZA 3IIGA 4BPIA 2IMSA 3IO9A 1LXLA 2VVXA 3KJ2A 2KUAA 1R2GA 2VOIA 4HW3A 3DVUA 2O2FA 3I1HA 3IHEA 2RODA 4UF3A 2NL9A 4ZEQA 2O22A 4BD8A 3ILCA 2YV6A 1R2EA 2VOFA 2O2NA 5FDOA 2V6QA 1WSXA 1ZY3A 2NLAA 2UXEA 4LQKA 2BZWA 2K7WA 1K3KA 1MK3A 2VOGA 4QVXA 2VM6A 2O42A 5JSBA 2ROCA 2VVWA 2K36A 4BD2A 4ZIGA 2BIDA 3CVAX 4D2MA 4U2VA 5FC4A 4HW4A 3IHCA 1TY4A 3PK1A 2XA0A 4OQ5A 1F16A 1R2HA 4G35A 4S0OA 4OQ6A 4OYDA 1YSIA 1O0LA 1R2IA 2JBYA 2VOHA 1G5JA 4S0PA 2M5BA
chains in the Genus database with same CATH topology
2VVYA 4BBBA 2I39A 4UF1A 2JBXA 2O42A 2VVXA 4BBCA 2VVWA 2K36A 4D2MA 4UF2A 4UF3A 3JRVA 4BBDA 4LQKA 4M0SA 2VTYA 4D2LA 2JBYA 2UXEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VVX A;  4BBC A;  2VVY A;  2VVW A;  2K36 A;  4BBB A;  2I39 A;  3JRV A;  4BBD A;  4LQK A;  4M0S A;  2UXE A; 
#chains in the Genus database with same CATH topology
 2JCN A;  2LR1 A;  4K5B C;  4BBB A;  2I39 A;  1G5M A;  5IEZ A;  4YJ4 A;  3KZ0 A;  2ME8 A;  2MEJ A;  4U2U A;  2MHS A;  4UF1 A;  4ZBF A;  2XPX A;  4BD6 A;  4HW2 A;  4BPJ A;  4UF2 A;  1AF3 A;  5FDR A;  1OHU A;  5C3F A;  3MQP A;  4WMR A;  1YSN A;  4ZBI A;  4BBD A;  2W3L A;  4MI8 A;  3D7V A;  3BL2 A;  2ABO A;  2KBW A;  4ZII A;  3WIX A;  4BD7 A;  2VTY A;  2WH6 A;  4D2L A;  1YSG A;  4QNQ A;  2A5Y A;  4YK9 A;  2VVY A;  3KJ1 A;  5KU9 A;  2B48 A;  4ZIF A;  5IF4 A;  2JBX A;  4BBC A;  1DDB A;  4BDU A;  1R2D A;  1BXL A;  3QBR A;  3WIY A;  3IIH A;  2O2M A;  3MK8 A;  4B4S A;  3KJ0 A;  1PQ1 A;  3JRV A;  5FMI A;  1YSW A;  4ZIE A;  4M0S A;  3IHD A;  1GJH A;  2O21 A;  2PQK A;  2IMT A;  5C6H A;  4ZIH A;  1PQ0 A;  2JM6 B;  1Q59 A;  5KTG A;  1MAZ A;  3IIG A;  4BPI A;  2IMS A;  3IO9 A;  1LXL A;  2VVX A;  3KJ2 A;  2KUA A;  1R2G A;  2VOI A;  4HW3 A;  3DVU A;  2O2F A;  3I1H A;  3IHE A;  2ROD A;  4UF3 A;  2NL9 A;  4ZEQ A;  2O22 A;  4BD8 A;  3ILC A;  2YV6 A;  1R2E A;  2VOF A;  2O2N A;  5FDO A;  2V6Q A;  1WSX A;  1ZY3 A;  2NLA A;  2UXE A;  4LQK A;  2BZW A;  2K7W A;  1K3K A;  1MK3 A;  2VOG A;  4QVX A;  2VM6 A;  2O42 A;  5JSB A;  2ROC A;  2VVW A;  2K36 A;  4BD2 A;  4ZIG A;  2BID A;  3CVA X;  4D2M A;  4U2V A;  5FC4 A;  4HW4 A;  3IHC A;  1TY4 A;  3PK1 A;  2XA0 A;  4OQ5 A;  1F16 A;  1R2H A;  4G35 A;  4S0O A;  4OQ6 A;  4OYD A;  1YSI A;  1O0L A;  1R2I A;  2JBY A;  2VOH A;  1G5J A;  4S0P A;  2M5B A; 
#chains in the Genus database with same CATH homology
 2VVY A;  4BBB A;  2I39 A;  4UF1 A;  2JBX A;  2O42 A;  2VVX A;  4BBC A;  2VVW A;  2K36 A;  4D2M A;  4UF2 A;  4UF3 A;  3JRV A;  4BBD A;  4LQK A;  4M0S A;  2VTY A;  4D2L A;  2JBY A;  2UXE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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