4BBRM

Structure of rna polymerase ii-tfiib complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
193
structure length
193
Chain Sequence
b'LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNIL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
publication title Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Transcription
total genus 39
structure length 193
sequence length 193
ec nomenclature
pdb deposition date 2012-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00382 TFIIB Transcription factor TFIIB repeat
M PF08271 TF_Zn_Ribbon TFIIB zinc-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.170 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 4bbrM00
4BBRM 4BBSM
chains in the Genus database with same CATH superfamily
4F70B 4UN0A 4CFNB 3TN8B 3NDQA 3A8OB 3HBLA 4Z6YA 1JKWA 1H1SB 4ZGDB 2W9ZA 3HZJA 2B9RA 1GUXA 2BKZB 2DMEA 2ZCFB 4CXAB 2ZZDB 3QXEB 2CCIB 4EORB 1OKVB 4OB3B 4ZGJB 1OKWB 4JX6A 4EOLB 2I40B 1ZP2A 2UZBB 5HBHB 2WMBB 3MY5B 4EOJB 1F5QB 3QWLA 1VYWB 3TNWB 4BCHB 4G6LB 1QLBA 1OGUB 5HVYB 2BS2A 2W2HA 4CFWB 1OL2B 3TNHB 1ENWA 3MIAB 2QQ8A 4BXXX 3QYGB 1AD6A 1O9KA 4OR5B 2QDYB 1FVVB 4BCND 3EOCB 4EC8B 1AHJB 2CZ0B 2QGSA 2BS3A 2D0QB 3QYHB 4BCQB 4ELLA 4OB0B 3X26B 1H26B 3MY1B 3RGFB 3X24B 4EOPB 1H1PB 4II5B 4HNUA 1UNLD 2IVXA 3QZ9B 4NSTB 1TFBA 2CZ1B 4F6UB 2I53A 3A8HB 4EOKB 2W96A 4BCQD 3DDPB 4YOOA 4F7LB 4YOZA 2PJQA 4M6VA 4BBRM 4BBSM 2WIPB 1JOWA 1IREB 4BCMB 4OGRB 5IDNB 5HNBB 4KRDB 2DPPB 1UGSB 2W99A 3BG3A 1UGRB 2LW4A 1V29B 3BHVB 2PHGA 3X20B 2QF7A 4CRLB 3O0GD 1H25B 3VYGB 2WXVB 1OL1B 4OB1B 4HL4A 2X1NB 1C9BA 1GH6B 1G3NC 2DXBB 4LOCA 5EJCA 2CCHB 4BCGB 4AKGA 1D3UB 1OIUB 3TW6A 4EOIB 1VOLA 4AKIA 5ICPB 1TD6A 3KHIA 4ROEA 4CFUB 2C6TB 4EONB 3BHTB 3WVDB 4MFEA 5HBEB 1JSUB 3GTMS 4MIMA 3DDQB 3X28B 3B57A 5IDPB 3HHTB 2G77A 2DD4B 2IW6B 1O9KB 3QYEA 4I3ZB 2W9FA 3EIDB 4F6SB 1W98B 3VKGA 2ZPHB 1GY3B 2R7GA 2C4GB 2WMAB 3VKHA 4CFUD 2UZEB 2AHJB 1JSTB 4BCOB 3TW7A 3BHUB 2ZPGB 4JX4A 1UGPB 2C5VB 4BCIB 4ZGEB 4IMYB 1QMZB 5BNJB 3DTOA 2G9XB 4EOSB 2ZPBB 2IW8B 3A8MB 1E7PA 3BG9A 1KXUA 4BCJB 4YOSA 3WVEB 3M03A 4CFMB 2PMIB 1BU2A 3QHRB 5DQVA 4BY7X 1AISB 2WPAB 3K7AM 5HBJB 1FKMA 4ELJA 4YC3B 5L2WB 5CEIB 1UNHD 2DXCB 4NC6A 1P5EB 1E9HB 1H1QB 4AI6A 4MFDA 2ZPFB 2WFYB 2WEVB 4CFVB 2WHBB 2PK9B 2C5OB 4BCMD 1PKDB 2V22B 4EC9B 2ZPIB 3QYBA 2WJ9A 2IN3A 3DL1A 3EJ1B 1OIYB 4BCNB 5HQ0B 1XO2A 2ZPEB 4HNVA 5LQFB 2UUEB 1URCB 3QZ5B 4F7NB 3DOGB 1GUXB 2CYZB 2IW9B 3PO3S 4BCPB 5ACBA 3BLQB 4EOOB 4BY1X 1VINA 4BCFB 5DQWA 2KR6A 3A8LB 1H4LD 1H27B 2UZDB 5I5ZB 2DD5B 2F2CA 2C5XB 4BCKB 2BS4A 4EOMB 1FINB 4FX3B 3HO8A 3LQ5B 2QFZA 4ROCA 3QHWB 4KRCB 3BLRB 2UZLB 4RODA 2CZ7B 4OB2B 3BG5A 3F5XB 4F7JB 4HNTA 2KMGA 4TTHA 3MI9B 5LMKB 5FGKB 3DJBA 4JX5A 3BLHB 4Y72B 5EFQB 4HLQA 1H1RB 3A8GB 4AKHA 4F7SB 3H4CA 1UNGD 3G33B 3HB9A 1OI9B 2PK2A 2JGZB 4CFXB 2CJMB 1UGQB 4FM4B 5IHYA 4F6WB 3TNIB 2CZ6B 1N4MA 3POMA 3X25B 2QDJA 5CYIB 1H24B 2WIHB 2EUFA 2C5NB 5IF1B 2BPMB 4QSHA 4EOQB 3VYHB 1H28B
chains in the Genus database with same CATH topology
2DD4B 4BBRM 2CYZB 4M6VA 3QYEA 3VKGA 2ZPHB 4BBSM 3A8OB 3HBLA 1IREB 4Z6YA 3VKHA 2AHJB 2KR6A 3A8LB 4ZGDB 3HZJA 3TW7A 2DPPB 1UGSB 2ZCFB 3BG3A 2ZPGB 4JX4A 2ZZDB 3QXEB 1UGPB 1UGRB 4ZGEB 2DD5B 1V29B 2BS4A 4OB3B 4ZGJB 4JX6A 3HO8A 2QFZA 2ZPBB 3A8MB 1E7PA 3BG9A 3X20B 2QF7A 3QWLA 3WVEB 1QLBA 2BS2A 3VYGB 2CZ7B 4OB2B 3BG5A 4OB1B 4HNTA 4HL4A 2QQ8A 3QYGB 2KMGA 2DXBB 2QDYB 4LOCA 5EJCA 1FKMA 4ELJA 1AHJB 4AKGA 2CZ0B 2DXCB 4JX5A 4NC6A 2BS3A 2D0QB 3QYHB 4AI6A 4MFDA 2ZPFB 4OB0B 3X26B 3TW6A 4HLQA 3A8GB 4AKHA 4AKIA 3H4CA 3X24B 3KHIA 2G77A 4HNUA 3HB9A 2ZPIB 3WVDB 4MFEA 1UGQB 4FM4B 3QYBA 2WJ9A 3DL1A 3QZ9B 2CZ6B 3X25B 2CZ1B 2QDJA 4MIMA 2ZPEB 3X28B 4HNVA 3A8HB 4QSHA 3HHTB 3VYHB 3QZ5B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BBR M;  4BBS M; 
#chains in the Genus database with same CATH topology
 4F70 B;  4UN0 A;  4CFN B;  3TN8 B;  3NDQ A;  3A8O B;  3HBL A;  4Z6Y A;  1JKW A;  1H1S B;  4ZGD B;  2W9Z A;  3HZJ A;  2B9R A;  1GUX A;  2BKZ B;  2DME A;  2ZCF B;  4CXA B;  2ZZD B;  3QXE B;  2CCI B;  4EOR B;  1OKV B;  4OB3 B;  4ZGJ B;  1OKW B;  4JX6 A;  4EOL B;  2I40 B;  1ZP2 A;  2UZB B;  5HBH B;  2WMB B;  3MY5 B;  4EOJ B;  1F5Q B;  3QWL A;  1VYW B;  3TNW B;  4BCH B;  4G6L B;  1QLB A;  1OGU B;  5HVY B;  2BS2 A;  2W2H A;  4CFW B;  1OL2 B;  3TNH B;  1ENW A;  3MIA B;  2QQ8 A;  4BXX X;  3QYG B;  1AD6 A;  1O9K A;  4OR5 B;  2QDY B;  1FVV B;  4BCN D;  3EOC B;  4EC8 B;  1AHJ B;  2CZ0 B;  2QGS A;  2BS3 A;  2D0Q B;  3QYH B;  4BCQ B;  4ELL A;  4OB0 B;  3X26 B;  1H26 B;  3MY1 B;  3RGF B;  3X24 B;  4EOP B;  1H1P B;  4II5 B;  4HNU A;  1UNL D;  2IVX A;  3QZ9 B;  4NST B;  1TFB A;  2CZ1 B;  4F6U B;  2I53 A;  3A8H B;  4EOK B;  2W96 A;  4BCQ D;  3DDP B;  4YOO A;  4F7L B;  4YOZ A;  2PJQ A;  4M6V A;  4BBR M;  4BBS M;  2WIP B;  1JOW A;  1IRE B;  4BCM B;  4OGR B;  5IDN B;  5HNB B;  4KRD B;  2DPP B;  1UGS B;  2W99 A;  3BG3 A;  1UGR B;  2LW4 A;  1V29 B;  3BHV B;  2PHG A;  3X20 B;  2QF7 A;  4CRL B;  3O0G D;  1H25 B;  3VYG B;  2WXV B;  1OL1 B;  4OB1 B;  4HL4 A;  2X1N B;  1C9B A;  1GH6 B;  1G3N C;  2DXB B;  4LOC A;  5EJC A;  2CCH B;  4BCG B;  4AKG A;  1D3U B;  1OIU B;  3TW6 A;  4EOI B;  1VOL A;  4AKI A;  5ICP B;  1TD6 A;  3KHI A;  4ROE A;  4CFU B;  2C6T B;  4EON B;  3BHT B;  3WVD B;  4MFE A;  5HBE B;  1JSU B;  3GTM S;  4MIM A;  3DDQ B;  3X28 B;  3B57 A;  5IDP B;  3HHT B;  2G77 A;  2DD4 B;  2IW6 B;  1O9K B;  3QYE A;  4I3Z B;  2W9F A;  3EID B;  4F6S B;  1W98 B;  3VKG A;  2ZPH B;  1GY3 B;  2R7G A;  2C4G B;  2WMA B;  3VKH A;  4CFU D;  2UZE B;  2AHJ B;  1JST B;  4BCO B;  3TW7 A;  3BHU B;  2ZPG B;  4JX4 A;  1UGP B;  2C5V B;  4BCI B;  4ZGE B;  4IMY B;  1QMZ B;  5BNJ B;  3DTO A;  2G9X B;  4EOS B;  2ZPB B;  2IW8 B;  3A8M B;  1E7P A;  3BG9 A;  1KXU A;  4BCJ B;  4YOS A;  3WVE B;  3M03 A;  4CFM B;  2PMI B;  1BU2 A;  3QHR B;  5DQV A;  4BY7 X;  1AIS B;  2WPA B;  3K7A M;  5HBJ B;  1FKM A;  4ELJ A;  4YC3 B;  5L2W B;  5CEI B;  1UNH D;  2DXC B;  4NC6 A;  1P5E B;  1E9H B;  1H1Q B;  4AI6 A;  4MFD A;  2ZPF B;  2WFY B;  2WEV B;  4CFV B;  2WHB B;  2PK9 B;  2C5O B;  4BCM D;  1PKD B;  2V22 B;  4EC9 B;  2ZPI B;  3QYB A;  2WJ9 A;  2IN3 A;  3DL1 A;  3EJ1 B;  1OIY B;  4BCN B;  5HQ0 B;  1XO2 A;  2ZPE B;  4HNV A;  5LQF B;  2UUE B;  1URC B;  3QZ5 B;  4F7N B;  3DOG B;  1GUX B;  2CYZ B;  2IW9 B;  3PO3 S;  4BCP B;  5ACB A;  3BLQ B;  4EOO B;  4BY1 X;  1VIN A;  4BCF B;  5DQW A;  2KR6 A;  3A8L B;  1H4L D;  1H27 B;  2UZD B;  5I5Z B;  2DD5 B;  2F2C A;  2C5X B;  4BCK B;  2BS4 A;  4EOM B;  1FIN B;  4FX3 B;  3HO8 A;  3LQ5 B;  2QFZ A;  4ROC A;  3QHW B;  4KRC B;  3BLR B;  2UZL B;  4ROD A;  2CZ7 B;  4OB2 B;  3BG5 A;  3F5X B;  4F7J B;  4HNT A;  2KMG A;  4TTH A;  3MI9 B;  5LMK B;  5FGK B;  3DJB A;  4JX5 A;  3BLH B;  4Y72 B;  5EFQ B;  4HLQ A;  1H1R B;  3A8G B;  4AKH A;  4F7S B;  3H4C A;  1UNG D;  3G33 B;  3HB9 A;  1OI9 B;  2PK2 A;  2JGZ B;  4CFX B;  2CJM B;  1UGQ B;  4FM4 B;  5IHY A;  4F6W B;  3TNI B;  2CZ6 B;  1N4M A;  3POM A;  3X25 B;  2QDJ A;  5CYI B;  1H24 B;  2WIH B;  2EUF A;  2C5N B;  5IF1 B;  2BPM B;  4QSH A;  4EOQ B;  3VYH B;  1H28 B; 
#chains in the Genus database with same CATH homology
 2DD4 B;  4BBR M;  2CYZ B;  4M6V A;  3QYE A;  3VKG A;  2ZPH B;  4BBS M;  3A8O B;  3HBL A;  1IRE B;  4Z6Y A;  3VKH A;  2AHJ B;  2KR6 A;  3A8L B;  4ZGD B;  3HZJ A;  3TW7 A;  2DPP B;  1UGS B;  2ZCF B;  3BG3 A;  2ZPG B;  4JX4 A;  2ZZD B;  3QXE B;  1UGP B;  1UGR B;  4ZGE B;  2DD5 B;  1V29 B;  2BS4 A;  4OB3 B;  4ZGJ B;  4JX6 A;  3HO8 A;  2QFZ A;  2ZPB B;  3A8M B;  1E7P A;  3BG9 A;  3X20 B;  2QF7 A;  3QWL A;  3WVE B;  1QLB A;  2BS2 A;  3VYG B;  2CZ7 B;  4OB2 B;  3BG5 A;  4OB1 B;  4HNT A;  4HL4 A;  2QQ8 A;  3QYG B;  2KMG A;  2DXB B;  2QDY B;  4LOC A;  5EJC A;  1FKM A;  4ELJ A;  1AHJ B;  4AKG A;  2CZ0 B;  2DXC B;  4JX5 A;  4NC6 A;  2BS3 A;  2D0Q B;  3QYH B;  4AI6 A;  4MFD A;  2ZPF B;  4OB0 B;  3X26 B;  3TW6 A;  4HLQ A;  3A8G B;  4AKH A;  4AKI A;  3H4C A;  3X24 B;  3KHI A;  2G77 A;  4HNU A;  3HB9 A;  2ZPI B;  3WVD B;  4MFE A;  1UGQ B;  4FM4 B;  3QYB A;  2WJ9 A;  3DL1 A;  3QZ9 B;  2CZ6 B;  3X25 B;  2CZ1 B;  2QDJ A;  4MIM A;  2ZPE B;  3X28 B;  4HNV A;  3A8H B;  4QSH A;  3HHT B;  3VYH B;  3QZ5 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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