4BD6A

Bax domain swapped dimer in complex with baxbh3
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
158
structure length
147
Chain Sequence
GGGPTSSEQIMKTGALLLQGFIQDRAGRPVPQDASTKKLSESLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords APOPTOSIS REGULATOR BAX
publication title Bax Crystal Structures Reveal How Bh3 Domains Activate Bax and Nucleate its Oligomerization to Induce Apoptosis.
pubmed doi rcsb
source organism Homo sapiens
total genus 57
structure length 147
sequence length 158
ec nomenclature
pdb deposition date 2012-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 4bd6A00
2MHSA 4ZIHA 4BPIA 1PQ1A 2RODA 1R2HA 2V6QA 3ILCA 4S0PA 3IIGA 5FDRA 4OYDA 5IEZA 4MI8A 2KUAA 1TY4A 4ZIIA 2JCNA 4G35A 2O2FA 2ROCA 2BIDA 2YV6A 4QVXA 1LXLA 2VOGA 2A5YA 2XA0A 1R2EA 3CVAX 1Q59A 1YSNA 3D7VA 5C6HA 2B48A 5C3FA 4ZIEA 3KJ2A 2IMTA 3WIYA 1O0LA 1K3KA 2WH6A 2K7WA 3KZ0A 2BZWA 3KJ1A 4QNQA 4BD2A 4BD8A 2W3LA 2PQKA 2NLAA 5KU9A 2M5BA 1GJHA 4ZIGA 4HW4A 4K5BC 4B4SA 1R2DA 4OQ5A 1MAZA 5KTGA 3IHCA 3IIHA 5IF4A 5JSBA 4BPJA 2ME8A 1OHUA 1PQ0A 2O2NA 5FC4A 1F16A 4WMRA 3I1HA 1YSWA 1G5JA 3PK1A 4HW2A 2VM6A 4ZEQA 2VOHA 5FDOA 4BD6A 1ZY3A 4ZIFA 2IMSA 4ZBFA 4OQ6A 1YSIA 1YSGA 1R2IA 3KJ0A 1R2GA 2XPXA 3IHEA 3WIXA 2VOIA 1WSXA 3DVUA 2VOFA 4ZBIA 5FMIA 4U2UA 3QBRA 1DDBA 3MK8A 4BDUA 2O2MA 4YJ4A 3BL2A 4S0OA 2LR1A 4HW3A 2MEJA 4U2VA 3IHDA 4YK9A 2NL9A 2O22A 1AF3A 2JM6B 4BD7A 1BXLA 2ABOA 1G5MA 3MQPA 2KBWA 2O21A 3IO9A 1MK3A
chains in the Genus database with same CATH superfamily
2MHSA 4ZIHA 4BPIA 1PQ1A 2RODA 1R2HA 2V6QA 3ILCA 4S0PA 3IIGA 5FDRA 4OYDA 5IEZA 4MI8A 2KUAA 1TY4A 4ZIIA 2JCNA 4G35A 2O2FA 2ROCA 2BIDA 2YV6A 4QVXA 1LXLA 2VOGA 2A5YA 2XA0A 1R2EA 3CVAX 1Q59A 1YSNA 3D7VA 5C6HA 2B48A 5C3FA 2O42A 4ZIEA 3KJ2A 4D2MA 2IMTA 3WIYA 1O0LA 1K3KA 2WH6A 2K7WA 3KZ0A 2BZWA 3KJ1A 4QNQA 4BD2A 4UF2A 4BD8A 2VTYA 2W3LA 2PQKA 4D2LA 2NLAA 5KU9A 2M5BA 1GJHA 4ZIGA 4HW4A 4K5BC 4B4SA 1R2DA 3JRVA 4OQ5A 1MAZA 5KTGA 2K36A 3IHCA 3IIHA 5IF4A 5JSBA 4BPJA 2ME8A 1OHUA 1PQ0A 2O2NA 5FC4A 1F16A 4WMRA 4BBDA 3I1HA 4BBCA 1YSWA 1G5JA 3PK1A 2VVYA 4HW2A 2VM6A 4ZEQA 2VOHA 5FDOA 4BD6A 1ZY3A 4ZIFA 2IMSA 4UF3A 4ZBFA 4M0SA 4OQ6A 1YSIA 1YSGA 1R2IA 3KJ0A 1R2GA 2XPXA 3IHEA 3WIXA 2VOIA 1WSXA 2I39A 2UXEA 3DVUA 2VOFA 4ZBIA 5FMIA 4U2UA 3QBRA 1DDBA 3MK8A 4BDUA 2O2MA 4YJ4A 2JBYA 3BL2A 4S0OA 2LR1A 4HW3A 2MEJA 4U2VA 2JBXA 3IHDA 4YK9A 2NL9A 2O22A 4LQKA 1AF3A 2JM6B 2VVXA 4UF1A 4BD7A 1BXLA 2ABOA 1G5MA 2VVWA 4BBBA 3MQPA 2KBWA 2O21A 3IO9A 1MK3A
chains in the Genus database with same CATH topology
2MHSA 4ZIHA 4BPIA 1PQ1A 2RODA 1R2HA 2V6QA 3ILCA 4S0PA 3IIGA 5FDRA 4OYDA 5IEZA 4MI8A 2KUAA 1TY4A 4ZIIA 2JCNA 4G35A 2O2FA 2ROCA 2BIDA 2YV6A 4QVXA 1LXLA 2VOGA 2A5YA 2XA0A 1R2EA 3CVAX 1Q59A 1YSNA 3D7VA 5C6HA 2B48A 5C3FA 4ZIEA 3KJ2A 2IMTA 3WIYA 1O0LA 1K3KA 2WH6A 2K7WA 3KZ0A 2BZWA 3KJ1A 4QNQA 4BD2A 4BD8A 2W3LA 2PQKA 2NLAA 5KU9A 2M5BA 1GJHA 4ZIGA 4HW4A 4K5BC 4B4SA 1R2DA 4OQ5A 1MAZA 5KTGA 3IHCA 3IIHA 5IF4A 5JSBA 4BPJA 2ME8A 1OHUA 1PQ0A 2O2NA 5FC4A 1F16A 4WMRA 3I1HA 1YSWA 1G5JA 3PK1A 4HW2A 2VM6A 4ZEQA 2VOHA 5FDOA 4BD6A 1ZY3A 4ZIFA 2IMSA 4ZBFA 4OQ6A 1YSIA 1YSGA 1R2IA 3KJ0A 1R2GA 2XPXA 3IHEA 3WIXA 2VOIA 1WSXA 3DVUA 2VOFA 4ZBIA 5FMIA 4U2UA 3QBRA 1DDBA 3MK8A 4BDUA 2O2MA 4YJ4A 3BL2A 4S0OA 2LR1A 4HW3A 2MEJA 4U2VA 3IHDA 4YK9A 2NL9A 2O22A 1AF3A 2JM6B 4BD7A 1BXLA 2ABOA 1G5MA 3MQPA 2KBWA 2O21A 3IO9A 1MK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MHS A;  4ZIH A;  4BPI A;  1PQ1 A;  2ROD A;  1R2H A;  2V6Q A;  3ILC A;  4S0P A;  3IIG A;  5FDR A;  4OYD A;  5IEZ A;  4MI8 A;  2KUA A;  1TY4 A;  4ZII A;  2JCN A;  4G35 A;  2O2F A;  2ROC A;  2BID A;  2YV6 A;  4QVX A;  1LXL A;  2VOG A;  2A5Y A;  2XA0 A;  1R2E A;  3CVA X;  1Q59 A;  1YSN A;  3D7V A;  5C6H A;  2B48 A;  5C3F A;  4ZIE A;  3KJ2 A;  2IMT A;  3WIY A;  1O0L A;  1K3K A;  2WH6 A;  2K7W A;  3KZ0 A;  2BZW A;  3KJ1 A;  4QNQ A;  4BD2 A;  4BD8 A;  2W3L A;  2PQK A;  2NLA A;  5KU9 A;  2M5B A;  1GJH A;  4ZIG A;  4HW4 A;  4K5B C;  4B4S A;  1R2D A;  4OQ5 A;  1MAZ A;  5KTG A;  3IHC A;  3IIH A;  5IF4 A;  5JSB A;  4BPJ A;  2ME8 A;  1OHU A;  1PQ0 A;  2O2N A;  5FC4 A;  1F16 A;  4WMR A;  3I1H A;  1YSW A;  1G5J A;  3PK1 A;  4HW2 A;  2VM6 A;  4ZEQ A;  2VOH A;  5FDO A;  4BD6 A;  1ZY3 A;  4ZIF A;  2IMS A;  4ZBF A;  4OQ6 A;  1YSI A;  1YSG A;  1R2I A;  3KJ0 A;  1R2G A;  2XPX A;  3IHE A;  3WIX A;  2VOI A;  1WSX A;  3DVU A;  2VOF A;  4ZBI A;  5FMI A;  4U2U A;  3QBR A;  1DDB A;  3MK8 A;  4BDU A;  2O2M A;  4YJ4 A;  3BL2 A;  4S0O A;  2LR1 A;  4HW3 A;  2MEJ A;  4U2V A;  3IHD A;  4YK9 A;  2NL9 A;  2O22 A;  1AF3 A;  2JM6 B;  4BD7 A;  1BXL A;  2ABO A;  1G5M A;  3MQP A;  2KBW A;  2O21 A;  3IO9 A;  1MK3 A; 
#chains in the Genus database with same CATH topology
 2MHS A;  4ZIH A;  4BPI A;  1PQ1 A;  2ROD A;  1R2H A;  2V6Q A;  3ILC A;  4S0P A;  3IIG A;  5FDR A;  4OYD A;  5IEZ A;  4MI8 A;  2KUA A;  1TY4 A;  4ZII A;  2JCN A;  4G35 A;  2O2F A;  2ROC A;  2BID A;  2YV6 A;  4QVX A;  1LXL A;  2VOG A;  2A5Y A;  2XA0 A;  1R2E A;  3CVA X;  1Q59 A;  1YSN A;  3D7V A;  5C6H A;  2B48 A;  5C3F A;  2O42 A;  4ZIE A;  3KJ2 A;  4D2M A;  2IMT A;  3WIY A;  1O0L A;  1K3K A;  2WH6 A;  2K7W A;  3KZ0 A;  2BZW A;  3KJ1 A;  4QNQ A;  4BD2 A;  4UF2 A;  4BD8 A;  2VTY A;  2W3L A;  2PQK A;  4D2L A;  2NLA A;  5KU9 A;  2M5B A;  1GJH A;  4ZIG A;  4HW4 A;  4K5B C;  4B4S A;  1R2D A;  3JRV A;  4OQ5 A;  1MAZ A;  5KTG A;  2K36 A;  3IHC A;  3IIH A;  5IF4 A;  5JSB A;  4BPJ A;  2ME8 A;  1OHU A;  1PQ0 A;  2O2N A;  5FC4 A;  1F16 A;  4WMR A;  4BBD A;  3I1H A;  4BBC A;  1YSW A;  1G5J A;  3PK1 A;  2VVY A;  4HW2 A;  2VM6 A;  4ZEQ A;  2VOH A;  5FDO A;  4BD6 A;  1ZY3 A;  4ZIF A;  2IMS A;  4UF3 A;  4ZBF A;  4M0S A;  4OQ6 A;  1YSI A;  1YSG A;  1R2I A;  3KJ0 A;  1R2G A;  2XPX A;  3IHE A;  3WIX A;  2VOI A;  1WSX A;  2I39 A;  2UXE A;  3DVU A;  2VOF A;  4ZBI A;  5FMI A;  4U2U A;  3QBR A;  1DDB A;  3MK8 A;  4BDU A;  2O2M A;  4YJ4 A;  2JBY A;  3BL2 A;  4S0O A;  2LR1 A;  4HW3 A;  2MEJ A;  4U2V A;  2JBX A;  3IHD A;  4YK9 A;  2NL9 A;  2O22 A;  4LQK A;  1AF3 A;  2JM6 B;  2VVX A;  4UF1 A;  4BD7 A;  1BXL A;  2ABO A;  1G5M A;  2VVW A;  4BBB A;  3MQP A;  2KBW A;  2O21 A;  3IO9 A;  1MK3 A; 
#chains in the Genus database with same CATH homology
 2MHS A;  4ZIH A;  4BPI A;  1PQ1 A;  2ROD A;  1R2H A;  2V6Q A;  3ILC A;  4S0P A;  3IIG A;  5FDR A;  4OYD A;  5IEZ A;  4MI8 A;  2KUA A;  1TY4 A;  4ZII A;  2JCN A;  4G35 A;  2O2F A;  2ROC A;  2BID A;  2YV6 A;  4QVX A;  1LXL A;  2VOG A;  2A5Y A;  2XA0 A;  1R2E A;  3CVA X;  1Q59 A;  1YSN A;  3D7V A;  5C6H A;  2B48 A;  5C3F A;  4ZIE A;  3KJ2 A;  2IMT A;  3WIY A;  1O0L A;  1K3K A;  2WH6 A;  2K7W A;  3KZ0 A;  2BZW A;  3KJ1 A;  4QNQ A;  4BD2 A;  4BD8 A;  2W3L A;  2PQK A;  2NLA A;  5KU9 A;  2M5B A;  1GJH A;  4ZIG A;  4HW4 A;  4K5B C;  4B4S A;  1R2D A;  4OQ5 A;  1MAZ A;  5KTG A;  3IHC A;  3IIH A;  5IF4 A;  5JSB A;  4BPJ A;  2ME8 A;  1OHU A;  1PQ0 A;  2O2N A;  5FC4 A;  1F16 A;  4WMR A;  3I1H A;  1YSW A;  1G5J A;  3PK1 A;  4HW2 A;  2VM6 A;  4ZEQ A;  2VOH A;  5FDO A;  4BD6 A;  1ZY3 A;  4ZIF A;  2IMS A;  4ZBF A;  4OQ6 A;  1YSI A;  1YSG A;  1R2I A;  3KJ0 A;  1R2G A;  2XPX A;  3IHE A;  3WIX A;  2VOI A;  1WSX A;  3DVU A;  2VOF A;  4ZBI A;  5FMI A;  4U2U A;  3QBR A;  1DDB A;  3MK8 A;  4BDU A;  2O2M A;  4YJ4 A;  3BL2 A;  4S0O A;  2LR1 A;  4HW3 A;  2MEJ A;  4U2V A;  3IHD A;  4YK9 A;  2NL9 A;  2O22 A;  1AF3 A;  2JM6 B;  4BD7 A;  1BXL A;  2ABO A;  1G5M A;  3MQP A;  2KBW A;  2O21 A;  3IO9 A;  1MK3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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