4BGJA

Crystal structure of the phox-homology domain of human sorting nexin 14
Total Genus 34
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
135
structure length
118
Chain Sequence
PRNLAAWKISIPYVDFFEERIPVFCIDVERNDRRHEPEHWSVYRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPELSNSQLLADFLSPNQFL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport
molecule keywords SORTING NEXIN-14
publication title Crystal Structure of the Phox-Homology Domain of Human Sorting Nexin 14
rcsb
source organism Homo sapiens
total genus 34
structure length 118
sequence length 135
ec nomenclature
pdb deposition date 2013-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 4bgjA00
1GD5A 1OCSA 3P0CA 2I4KA 4HASA 2L73A 4BGJA 2V14A 4OXWA 1KMDA 4AKVA 3HPBA 1OCUA 2CZOA 2IWLX 3HPCX 4P2IA 4P2JA 2AR5A 1H6HA 2RAJA 3IQ2A 4PZGA 1XTEA 4PQOA 2REDA 2REAA 2RAIA 4IKBA 3DYTA 4AZ9A 4IKBB 2CSKA 2DYBA 2V6VA 1O7KA 3FOGA 2RAKA 2ETTA 4IKDA 1XTNA 4PQPA 2YPSA 4ON3A 3LUIA 2WWEA 1KQ6A
chains in the Genus database with same CATH superfamily
1GD5A 1OCSA 3P0CA 2I4KA 4HASA 2L73A 4BGJA 2V14A 4OXWA 1KMDA 4AKVA 3HPBA 1OCUA 2CZOA 2IWLX 3HPCX 4P2IA 4P2JA 2AR5A 1H6HA 2RAJA 3IQ2A 4PZGA 1XTEA 4PQOA 2REDA 2REAA 2RAIA 4IKBA 3DYTA 4AZ9A 4IKBB 2CSKA 2DYBA 2V6VA 1O7KA 3FOGA 2RAKA 2ETTA 4IKDA 1XTNA 4PQPA 2YPSA 4ON3A 3LUIA 2WWEA 1KQ6A
chains in the Genus database with same CATH topology
1GD5A 1OCSA 3P0CA 2I4KA 4HASA 2L73A 4BGJA 2V14A 4OXWA 1KMDA 4AKVA 3HPBA 1OCUA 2CZOA 2IWLX 3HPCX 4P2IA 4P2JA 2AR5A 1H6HA 2RAJA 3IQ2A 4PZGA 1XTEA 4PQOA 2REDA 2REAA 2RAIA 4IKBA 3DYTA 4AZ9A 4IKBB 2CSKA 2DYBA 2V6VA 1O7KA 3FOGA 2RAKA 2ETTA 4IKDA 1XTNA 4PQPA 2YPSA 4ON3A 3LUIA 2WWEA 1KQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GD5 A;  1OCS A;  3P0C A;  2I4K A;  4HAS A;  2L73 A;  4BGJ A;  2V14 A;  4OXW A;  1KMD A;  4AKV A;  3HPB A;  1OCU A;  2CZO A;  2IWL X;  3HPC X;  4P2I A;  4P2J A;  2AR5 A;  1H6H A;  2RAJ A;  3IQ2 A;  4PZG A;  1XTE A;  4PQO A;  2RED A;  2REA A;  2RAI A;  4IKB A;  3DYT A;  4AZ9 A;  4IKB B;  2CSK A;  2DYB A;  2V6V A;  1O7K A;  3FOG A;  2RAK A;  2ETT A;  4IKD A;  1XTN A;  4PQP A;  2YPS A;  4ON3 A;  3LUI A;  2WWE A;  1KQ6 A; 
#chains in the Genus database with same CATH topology
 1GD5 A;  1OCS A;  3P0C A;  2I4K A;  4HAS A;  2L73 A;  4BGJ A;  2V14 A;  4OXW A;  1KMD A;  4AKV A;  3HPB A;  1OCU A;  2CZO A;  2IWL X;  3HPC X;  4P2I A;  4P2J A;  2AR5 A;  1H6H A;  2RAJ A;  3IQ2 A;  4PZG A;  1XTE A;  4PQO A;  2RED A;  2REA A;  2RAI A;  4IKB A;  3DYT A;  4AZ9 A;  4IKB B;  2CSK A;  2DYB A;  2V6V A;  1O7K A;  3FOG A;  2RAK A;  2ETT A;  4IKD A;  1XTN A;  4PQP A;  2YPS A;  4ON3 A;  3LUI A;  2WWE A;  1KQ6 A; 
#chains in the Genus database with same CATH homology
 1GD5 A;  1OCS A;  3P0C A;  2I4K A;  4HAS A;  2L73 A;  4BGJ A;  2V14 A;  4OXW A;  1KMD A;  4AKV A;  3HPB A;  1OCU A;  2CZO A;  2IWL X;  3HPC X;  4P2I A;  4P2J A;  2AR5 A;  1H6H A;  2RAJ A;  3IQ2 A;  4PZG A;  1XTE A;  4PQO A;  2RED A;  2REA A;  2RAI A;  4IKB A;  3DYT A;  4AZ9 A;  4IKB B;  2CSK A;  2DYB A;  2V6V A;  1O7K A;  3FOG A;  2RAK A;  2ETT A;  4IKD A;  1XTN A;  4PQP A;  2YPS A;  4ON3 A;  3LUI A;  2WWE A;  1KQ6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...