4BN8A

Nitroreductase cind from lactococcus lactis in complex with 4- nitrophenol
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
201
structure length
188
Chain Sequence
SFIKSLENRRTIYALGRNVQDEEKVIETIKEAVRFSPTAFNSQTGRLLILTGDAQDKLWDEIVAPELKAAMEAKLDGFKAAFGTILFFEDQAVVKNLQEQFALYADNFPVWSEQGSGIISVNVWTALAELGLGANLQHYNPLIDEAVAKEWNLPESWKLRGQLVFGSIEAPAGEKTFMDDADRFIVAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords COPPER INDUCED NITROREDUCTASE D
publication title Nitroreductase Cind from Lactococcus Lactis
rcsb
source organism Lactococcus lactis
total genus 57
structure length 188
sequence length 201
ec nomenclature
pdb deposition date 2013-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 4bn8A00
2IFAA 3GBHA 2ISLA 1ICRA 5HDJA 3HJ9A 1V5YA 3GE5A 4G8SA 5KO7A 1OO6A 4BN9A 3EK3A 1YKIA 3E10A 4BNBA 3BM1A 3GFDA 3BM2A 4URPA 3QDLA 3E39A 4BN6A 3GB5A 3TO0A 3GFAA 5KO8A 3KOQA 2ISJA 1NOXA 2R01A 1ICVA 1OOQA 1DS7A 2I7HA 3X21A 2BKJA 1ZCHA 1F5VA 3K6HA 4BN8A 1V5ZA 4DN2A 2B67A 2ISKA 3KWKA 2FREA 3OF4A 3GE6A 4BN7A 3PXVA 1OONA 1KQCA 4QLYA 1BKJA 4QLXA 1KQDA 4XOMA 4TTBA 1VKWA 1VFRA 3HOIA 3H4OA 2WZVA 3EO7A 2HAYA 4EO3A 2WZWA 1NECA 3TNZA 3G14A 4XOOA 1YLUA 1OO5A 5KRDA 4XOQA 2WQFA 3X22A 5J6CA 1KQBA 3N2SA 3HZNA 3EO8A 1ICUA 1YLRA 1YWQA 4TTCA 3BEMA 2H0UA 5HEIA 1IDTA 3GR3A 2YMVA 3GAGA 3GH8A 3M5KA 3EOFA
chains in the Genus database with same CATH superfamily
2IFAA 3GBHA 2ISLA 1ICRA 5HDJA 3HJ9A 1V5YA 3GE5A 4G8SA 5KO7A 1OO6A 4BN9A 3EK3A 1YKIA 3E10A 4BNBA 3BM1A 3GFDA 3BM2A 4URPA 3QDLA 3E39A 4BN6A 3GB5A 3TO0A 3GFAA 5KO8A 3KOQA 2ISJA 1NOXA 2R01A 1ICVA 1OOQA 1DS7A 2I7HA 3X21A 2BKJA 1ZCHA 1F5VA 3K6HA 4BN8A 1V5ZA 4DN2A 2B67A 2ISKA 3KWKA 2FREA 3OF4A 3GE6A 4BN7A 3PXVA 1OONA 1KQCA 4QLYA 1BKJA 4QLXA 1KQDA 4XOMA 4TTBA 1VKWA 1VFRA 1J6RA 3HOIA 3H4OA 2WZVA 3EO7A 2HAYA 4EO3A 2WZWA 1NECA 3TNZA 3G14A 4XOOA 1YLUA 1OO5A 5KRDA 4XOQA 2WQFA 3X22A 5J6CA 1KQBA 3N2SA 3HZNA 3EO8A 1ICUA 1YLRA 1YWQA 4TTCA 3BEMA 2H0UA 5HEIA 1IDTA 3GR3A 2YMVA 3GAGA 3GH8A 3M5KA 3EOFA
chains in the Genus database with same CATH topology
2IFAA 3GBHA 2ISLA 1ICRA 5HDJA 3HJ9A 1V5YA 3GE5A 4G8SA 5KO7A 1OO6A 4BN9A 3EK3A 1YKIA 3E10A 4BNBA 3BM1A 3GFDA 3BM2A 4URPA 3QDLA 3E39A 4BN6A 3GB5A 3TO0A 3GFAA 5KO8A 3KOQA 2ISJA 1NOXA 2R01A 1ICVA 1OOQA 1DS7A 2I7HA 3X21A 2BKJA 1ZCHA 1F5VA 3K6HA 4BN8A 1V5ZA 4DN2A 2B67A 2ISKA 3KWKA 2FREA 3OF4A 3GE6A 4BN7A 3PXVA 1OONA 1KQCA 4QLYA 1BKJA 4QLXA 1KQDA 4XOMA 4TTBA 1VKWA 1VFRA 1J6RA 3HOIA 3H4OA 2WZVA 3EO7A 2HAYA 4EO3A 2WZWA 1NECA 3TNZA 3G14A 4XOOA 1YLUA 1OO5A 5KRDA 4XOQA 2WQFA 3X22A 5J6CA 1KQBA 3N2SA 3HZNA 3EO8A 1ICUA 1YLRA 1YWQA 4TTCA 3BEMA 2H0UA 5HEIA 1IDTA 3GR3A 2YMVA 3GAGA 3GH8A 3M5KA 3EOFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IFA A;  3GBH A;  2ISL A;  1ICR A;  5HDJ A;  3HJ9 A;  1V5Y A;  3GE5 A;  4G8S A;  5KO7 A;  1OO6 A;  4BN9 A;  3EK3 A;  1YKI A;  3E10 A;  4BNB A;  3BM1 A;  3GFD A;  3BM2 A;  4URP A;  3QDL A;  3E39 A;  4BN6 A;  3GB5 A;  3TO0 A;  3GFA A;  5KO8 A;  3KOQ A;  2ISJ A;  1NOX A;  2R01 A;  1ICV A;  1OOQ A;  1DS7 A;  2I7H A;  3X21 A;  2BKJ A;  1ZCH A;  1F5V A;  3K6H A;  4BN8 A;  1V5Z A;  4DN2 A;  2B67 A;  2ISK A;  3KWK A;  2FRE A;  3OF4 A;  3GE6 A;  4BN7 A;  3PXV A;  1OON A;  1KQC A;  4QLY A;  1BKJ A;  4QLX A;  1KQD A;  4XOM A;  4TTB A;  1VKW A;  1VFR A;  3HOI A;  3H4O A;  2WZV A;  3EO7 A;  2HAY A;  4EO3 A;  2WZW A;  1NEC A;  3TNZ A;  3G14 A;  4XOO A;  1YLU A;  1OO5 A;  5KRD A;  4XOQ A;  2WQF A;  3X22 A;  5J6C A;  1KQB A;  3N2S A;  3HZN A;  3EO8 A;  1ICU A;  1YLR A;  1YWQ A;  4TTC A;  3BEM A;  2H0U A;  5HEI A;  1IDT A;  3GR3 A;  2YMV A;  3GAG A;  3GH8 A;  3M5K A;  3EOF A; 
#chains in the Genus database with same CATH topology
 2IFA A;  3GBH A;  2ISL A;  1ICR A;  5HDJ A;  3HJ9 A;  1V5Y A;  3GE5 A;  4G8S A;  5KO7 A;  1OO6 A;  4BN9 A;  3EK3 A;  1YKI A;  3E10 A;  4BNB A;  3BM1 A;  3GFD A;  3BM2 A;  4URP A;  3QDL A;  3E39 A;  4BN6 A;  3GB5 A;  3TO0 A;  3GFA A;  5KO8 A;  3KOQ A;  2ISJ A;  1NOX A;  2R01 A;  1ICV A;  1OOQ A;  1DS7 A;  2I7H A;  3X21 A;  2BKJ A;  1ZCH A;  1F5V A;  3K6H A;  4BN8 A;  1V5Z A;  4DN2 A;  2B67 A;  2ISK A;  3KWK A;  2FRE A;  3OF4 A;  3GE6 A;  4BN7 A;  3PXV A;  1OON A;  1KQC A;  4QLY A;  1BKJ A;  4QLX A;  1KQD A;  4XOM A;  4TTB A;  1VKW A;  1VFR A;  1J6R A;  3HOI A;  3H4O A;  2WZV A;  3EO7 A;  2HAY A;  4EO3 A;  2WZW A;  1NEC A;  3TNZ A;  3G14 A;  4XOO A;  1YLU A;  1OO5 A;  5KRD A;  4XOQ A;  2WQF A;  3X22 A;  5J6C A;  1KQB A;  3N2S A;  3HZN A;  3EO8 A;  1ICU A;  1YLR A;  1YWQ A;  4TTC A;  3BEM A;  2H0U A;  5HEI A;  1IDT A;  3GR3 A;  2YMV A;  3GAG A;  3GH8 A;  3M5K A;  3EOF A; 
#chains in the Genus database with same CATH homology
 2IFA A;  3GBH A;  2ISL A;  1ICR A;  5HDJ A;  3HJ9 A;  1V5Y A;  3GE5 A;  4G8S A;  5KO7 A;  1OO6 A;  4BN9 A;  3EK3 A;  1YKI A;  3E10 A;  4BNB A;  3BM1 A;  3GFD A;  3BM2 A;  4URP A;  3QDL A;  3E39 A;  4BN6 A;  3GB5 A;  3TO0 A;  3GFA A;  5KO8 A;  3KOQ A;  2ISJ A;  1NOX A;  2R01 A;  1ICV A;  1OOQ A;  1DS7 A;  2I7H A;  3X21 A;  2BKJ A;  1ZCH A;  1F5V A;  3K6H A;  4BN8 A;  1V5Z A;  4DN2 A;  2B67 A;  2ISK A;  3KWK A;  2FRE A;  3OF4 A;  3GE6 A;  4BN7 A;  3PXV A;  1OON A;  1KQC A;  4QLY A;  1BKJ A;  4QLX A;  1KQD A;  4XOM A;  4TTB A;  1VKW A;  1VFR A;  1J6R A;  3HOI A;  3H4O A;  2WZV A;  3EO7 A;  2HAY A;  4EO3 A;  2WZW A;  1NEC A;  3TNZ A;  3G14 A;  4XOO A;  1YLU A;  1OO5 A;  5KRD A;  4XOQ A;  2WQF A;  3X22 A;  5J6C A;  1KQB A;  3N2S A;  3HZN A;  3EO8 A;  1ICU A;  1YLR A;  1YWQ A;  4TTC A;  3BEM A;  2H0U A;  5HEI A;  1IDT A;  3GR3 A;  2YMV A;  3GAG A;  3GH8 A;  3M5K A;  3EOF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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