4BNEA

Pacsin2 interacts with membranes and actin-filaments
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
290
structure length
290
Chain Sequence
SDSFWEVGNYKRTVKRIDDGHRLCNDLMNCIHERARIEKVYAQQLTEWAKRWKQLVEKGPQYGTVERAWCAFMSEAEKVSELHLEVKGSLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHAACKEEKLAISRETNSKADPALNPEQLKKLQDKVERSKQDVLKTKAKYEKSLKELDNATPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKNIYRELEQNIKTADAVEDLRWFRANQGPGMSMNWPQFEDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
source organism Gallus gallus
publication title Direct Interaction of Actin Filaments with F-Bar Protein Pacsin2.
pubmed doi rcsb
molecule keywords PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROT
total genus 127
structure length 290
sequence length 290
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00018 SH3_1 SH3 domain
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4bneA01
3DYTA 1X03A 1I4LA 4NSWA 4DCNC 2Z0NA 4DYLA 1Y2OA 4BNEA 4WPEA 5C5BB 2EFKA 3M3WA 2Z0VA 4I1QA 3LLLA 3G9GA 3PLTA 3SOGA 4H8SA 3HAHA 1I4DA 3I2WA 2RAJA 2X3XA 3HAIA 1ZWWA 1WDZA 3Q84A 1I4TA 2RAIA 4NQIA 2D4CA 2RAKA 4FZSA 3SYVA 2Q12A 2X3VA 3ABHA 4ATMA 2YKTA 3HAJA 3QWEA 1X04A 5C5BA 3QNIA 3CAZA 2ELBA 3Q0KA 3OK8A 2D1LA 1URUA 2Z0OA 3ACOA 2Q13A 2V0OA 3QE6A 2EFLA 4WPCA 4AVMA 2FICA 4AKVA 2C08A 1I49A 2X3WA
chains in the Genus database with same CATH superfamily
4E3CA 4BNEA 1W9MA 1DKZA 4FZSA 2OZNB 3BUPA 4EZXA 4EZPA 2FYVA 3BVUA 2ND0A 3ACOA 3CV5A 1OA0A 3QE6A 3D4ZA 4JL9A 2C08A 3T49A 3EJPA 4AZCA 4JN4A 3BUQA 1WDZA 2F1BA 4JWDA 1O7DC 2YIVX 5C5BA 3EJUA 2F7QA 4EZYA 4HYBA 1E9VA 4AZBA 2LXYA 3G9GA 5FIGA 5FLEX 1I4DA 3ER8C 4JWCA 5KBPA 3I39X 4R5GA 2QFFA 3UITA 2V0OA 2YLLA 3ER9B 4EZSA 2X3WA 4NPHA 1X03A 2RT6A 3D2FA 2Z0NA 3ZEDA 4EZQA 4EZVA 1TQUA 4HR1A 3O3MB 1I4TA 2RAIA 3T48A 3B51X 3DPPA 2Q12A 3LVTA 1LQ7A 2F7PA 2D1LA 4IWQA 3T46A 2YL5A 4D8JA 5TKYA 2YIBA 3DDGA 3C7NA 3A98A 1HTYA 3KDRA 1R34A 4AZ7A 3VKHA 2D4CA 2MI7A 3B52X 2YL9A 4KIKA 2Z0OA 2FICA 1TQTA 2JNKA 3O3OB 3CVRA 3RV1A 4AZ5A 4FZPA 3HAHA 3DX4A 4FZOA 4F01A 1HWWA 3BVVA 4IWPA 3DX1A 1QWUA 3FD9A 2GF4A 3EJQA 3QWEA 3DDFA 2EX3B 3EJTA 4JWEA 2EFKA 2F7OA 3PLTA 3BVTA 1MJGA 2OBLA 2OBMA 4EZWA 2RAKA 4UDXX 3ABHA 1OA1A 2YL6A 2N3KA 4IM2A 3GI7A 2WYHA 1R33A 3LLLA 2KHOA 2X3XA 3B53X 3DPQA 3Q84A 3I01A 4AZCB 3BUIA 1PS3A 3CZSA 2Z8YA 2JNSA 4H6IA 3EJRA 1E1DA 1Y2OA 5C5BB 3D4YA 4AZGA 4EZTA 1YWMA 1ZWWA 1SU6A 4NQIA 3BLBA 2PMRA 1TQSA 3D51A 1SU7A 3EJSA 4JNFA 2YL8A 1HXKA 1UPXA 4HY9A 4AZ6A 2WINM 2ALWA 2OW7A 4H8SA 1DKXA 1QX1A 2RAJA 3CZNA 4E81A 3KAWA 2X3VA 4ATMA 2YKTA 3HAJA 1X04A 2ELBA 4AVMA 1TQVA 3KAVA 2PY6A 3DX2A 3D50A 3QA8A 4JNEA 4I1QA 1ZYLA 4G6QA 1O7DB 3HAIA 2EWFA 3BUDA 4R5IA 1U00A 4PO2A 5E84A 3D2EA 4IM3A 4UDYX 4IW0A 4EZNA 2EFLA 4AZHA 2GAFD 4R5KA 4KIKB 3O3NB 4B9QA 3ERCC 3BUBA 3QNJA 3DPOA 2YIAA 3QNIA 3Q0KA 2GA9D 1R5EA 2F18A 2Q13A 4EZOA 4EZRA 1JQKA 4F00A 3OWGA 2OO2A 1DKYA 4IM0A 3I2WA 3BVXA 4M0MA 3DX3A 3I04A 2LM0A 3F7WA 4NSWA 2ND1A 4WPEA 1GNLA 3D52A 2YI9A 4EZZA 4H6HA 3OHXM 4JLCA 2NCZA 4JWIA 3RV0A 1URUA 3L3PA 1QWNA 3SYVA 4DCNC 1I49A 1OAOA 3L3OM 4DYLA 2F1AA 2Z0VA 2QKWA 3SOGA 2F7RA 3VEAA 2QXLA 2YI8A 1GNTA 1GN9A 1SU8A 1TQWA 2O0I1 4WPCA 2OW6A 4HR1B 4AKVA 4AZIA 3DYTA 3LMFA 3RPMA 1I4LA 1E2UA 3M3WA 2YLAA 4R5JA 3VEBA 4R5LA 3DX0A 4IWOA 3T4AG 3T47A 3BVWA 2X5CA 4FM3A 4EZUA 2ZXQA 1SUFA 3CAZA 2WYIA 3CKDA 3OK8A
chains in the Genus database with same CATH topology
3DYTA 1X03A 1I4LA 4NSWA 4DCNC 2Z0NA 4DYLA 1Y2OA 4BNEA 4WPEA 5C5BB 2EFKA 3M3WA 2Z0VA 4I1QA 3LLLA 3G9GA 3PLTA 3SOGA 4H8SA 3HAHA 1I4DA 3I2WA 2RAJA 2X3XA 3HAIA 1ZWWA 1WDZA 3Q84A 1I4TA 2RAIA 4NQIA 2D4CA 2RAKA 4FZSA 3SYVA 2Q12A 2X3VA 3ABHA 4ATMA 2YKTA 3HAJA 3QWEA 1X04A 5C5BA 3QNIA 3CAZA 2ELBA 3Q0KA 3OK8A 2D1LA 1URUA 2Z0OA 3ACOA 2Q13A 2V0OA 3QE6A 2EFLA 4WPCA 4AVMA 2FICA 4AKVA 2C08A 1I49A 2X3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DYT A;  1X03 A;  1I4L A;  4NSW A;  4DCN C;  2Z0N A;  4DYL A;  1Y2O A;  4BNE A;  4WPE A;  5C5B B;  2EFK A;  3M3W A;  2Z0V A;  4I1Q A;  3LLL A;  3G9G A;  3PLT A;  3SOG A;  4H8S A;  3HAH A;  1I4D A;  3I2W A;  2RAJ A;  2X3X A;  3HAI A;  1ZWW A;  1WDZ A;  3Q84 A;  1I4T A;  2RAI A;  4NQI A;  2D4C A;  2RAK A;  4FZS A;  3SYV A;  2Q12 A;  2X3V A;  3ABH A;  4ATM A;  2YKT A;  3HAJ A;  3QWE A;  1X04 A;  5C5B A;  3QNI A;  3CAZ A;  2ELB A;  3Q0K A;  3OK8 A;  2D1L A;  1URU A;  2Z0O A;  3ACO A;  2Q13 A;  2V0O A;  3QE6 A;  2EFL A;  4WPC A;  4AVM A;  2FIC A;  4AKV A;  2C08 A;  1I49 A;  2X3W A; 
#chains in the Genus database with same CATH topology
 4E3C A;  4BNE A;  1W9M A;  1DKZ A;  4FZS A;  2OZN B;  3BUP A;  4EZX A;  4EZP A;  2FYV A;  3BVU A;  2ND0 A;  3ACO A;  3CV5 A;  1OA0 A;  3QE6 A;  3D4Z A;  4JL9 A;  2C08 A;  3T49 A;  3EJP A;  4AZC A;  4JN4 A;  3BUQ A;  1WDZ A;  2F1B A;  4JWD A;  1O7D C;  2YIV X;  5C5B A;  3EJU A;  2F7Q A;  4EZY A;  4HYB A;  1E9V A;  4AZB A;  2LXY A;  3G9G A;  5FIG A;  5FLE X;  1I4D A;  3ER8 C;  4JWC A;  5KBP A;  3I39 X;  4R5G A;  2QFF A;  3UIT A;  2V0O A;  2YLL A;  3ER9 B;  4EZS A;  2X3W A;  4NPH A;  1X03 A;  2RT6 A;  3D2F A;  2Z0N A;  3ZED A;  4EZQ A;  4EZV A;  1TQU A;  4HR1 A;  3O3M B;  1I4T A;  2RAI A;  3T48 A;  3B51 X;  3DPP A;  2Q12 A;  3LVT A;  1LQ7 A;  2F7P A;  2D1L A;  4IWQ A;  3T46 A;  2YL5 A;  4D8J A;  5TKY A;  2YIB A;  3DDG A;  3C7N A;  3A98 A;  1HTY A;  3KDR A;  1R34 A;  4AZ7 A;  3VKH A;  2D4C A;  2MI7 A;  3B52 X;  2YL9 A;  4KIK A;  2Z0O A;  2FIC A;  1TQT A;  2JNK A;  3O3O B;  3CVR A;  3RV1 A;  4AZ5 A;  4FZP A;  3HAH A;  3DX4 A;  4FZO A;  4F01 A;  1HWW A;  3BVV A;  4IWP A;  3DX1 A;  1QWU A;  3FD9 A;  2GF4 A;  3EJQ A;  3QWE A;  3DDF A;  2EX3 B;  3EJT A;  4JWE A;  2EFK A;  2F7O A;  3PLT A;  3BVT A;  1MJG A;  2OBL A;  2OBM A;  4EZW A;  2RAK A;  4UDX X;  3ABH A;  1OA1 A;  2YL6 A;  2N3K A;  4IM2 A;  3GI7 A;  2WYH A;  1R33 A;  3LLL A;  2KHO A;  2X3X A;  3B53 X;  3DPQ A;  3Q84 A;  3I01 A;  4AZC B;  3BUI A;  1PS3 A;  3CZS A;  2Z8Y A;  2JNS A;  4H6I A;  3EJR A;  1E1D A;  1Y2O A;  5C5B B;  3D4Y A;  4AZG A;  4EZT A;  1YWM A;  1ZWW A;  1SU6 A;  4NQI A;  3BLB A;  2PMR A;  1TQS A;  3D51 A;  1SU7 A;  3EJS A;  4JNF A;  2YL8 A;  1HXK A;  1UPX A;  4HY9 A;  4AZ6 A;  2WIN M;  2ALW A;  2OW7 A;  4H8S A;  1DKX A;  1QX1 A;  2RAJ A;  3CZN A;  4E81 A;  3KAW A;  2X3V A;  4ATM A;  2YKT A;  3HAJ A;  1X04 A;  2ELB A;  4AVM A;  1TQV A;  3KAV A;  2PY6 A;  3DX2 A;  3D50 A;  3QA8 A;  4JNE A;  4I1Q A;  1ZYL A;  4G6Q A;  1O7D B;  3HAI A;  2EWF A;  3BUD A;  4R5I A;  1U00 A;  4PO2 A;  5E84 A;  3D2E A;  4IM3 A;  4UDY X;  4IW0 A;  4EZN A;  2EFL A;  4AZH A;  2GAF D;  4R5K A;  4KIK B;  3O3N B;  4B9Q A;  3ERC C;  3BUB A;  3QNJ A;  3DPO A;  2YIA A;  3QNI A;  3Q0K A;  2GA9 D;  1R5E A;  2F18 A;  2Q13 A;  4EZO A;  4EZR A;  1JQK A;  4F00 A;  3OWG A;  2OO2 A;  1DKY A;  4IM0 A;  3I2W A;  3BVX A;  4M0M A;  3DX3 A;  3I04 A;  2LM0 A;  3F7W A;  4NSW A;  2ND1 A;  4WPE A;  1GNL A;  3D52 A;  2YI9 A;  4EZZ A;  4H6H A;  3OHX M;  4JLC A;  2NCZ A;  4JWI A;  3RV0 A;  1URU A;  3L3P A;  1QWN A;  3SYV A;  4DCN C;  1I49 A;  1OAO A;  3L3O M;  4DYL A;  2F1A A;  2Z0V A;  2QKW A;  3SOG A;  2F7R A;  3VEA A;  2QXL A;  2YI8 A;  1GNT A;  1GN9 A;  1SU8 A;  1TQW A;  2O0I 1;  4WPC A;  2OW6 A;  4HR1 B;  4AKV A;  4AZI A;  3DYT A;  3LMF A;  3RPM A;  1I4L A;  1E2U A;  3M3W A;  2YLA A;  4R5J A;  3VEB A;  4R5L A;  3DX0 A;  4IWO A;  3T4A G;  3T47 A;  3BVW A;  2X5C A;  4FM3 A;  4EZU A;  2ZXQ A;  1SUF A;  3CAZ A;  2WYI A;  3CKD A;  3OK8 A; 
#chains in the Genus database with same CATH homology
 3DYT A;  1X03 A;  1I4L A;  4NSW A;  4DCN C;  2Z0N A;  4DYL A;  1Y2O A;  4BNE A;  4WPE A;  5C5B B;  2EFK A;  3M3W A;  2Z0V A;  4I1Q A;  3LLL A;  3G9G A;  3PLT A;  3SOG A;  4H8S A;  3HAH A;  1I4D A;  3I2W A;  2RAJ A;  2X3X A;  3HAI A;  1ZWW A;  1WDZ A;  3Q84 A;  1I4T A;  2RAI A;  4NQI A;  2D4C A;  2RAK A;  4FZS A;  3SYV A;  2Q12 A;  2X3V A;  3ABH A;  4ATM A;  2YKT A;  3HAJ A;  3QWE A;  1X04 A;  5C5B A;  3QNI A;  3CAZ A;  2ELB A;  3Q0K A;  3OK8 A;  2D1L A;  1URU A;  2Z0O A;  3ACO A;  2Q13 A;  2V0O A;  3QE6 A;  2EFL A;  4WPC A;  4AVM A;  2FIC A;  4AKV A;  2C08 A;  1I49 A;  2X3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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