4BNEA

Pacsin2 interacts with membranes and actin-filaments
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
290
structure length
290
Chain Sequence
b'SDSFWEVGNYKRTVKRIDDGHRLCNDLMNCIHERARIEKVYAQQLTEWAKRWKQLVEKGPQYGTVERAWCAFMSEAEKVSELHLEVKGSLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHAACKEEKLAISRETNSKADPALNPEQLKKLQDKVERSKQDVLKTKAKYEKSLKELDNATPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKNIYRELEQNIKTADAVEDLRWFRANQGPGMSMNWPQFEDD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Direct Interaction of Actin Filaments with F-Bar Protein Pacsin2.
pubmed doi rcsb
molecule keywords PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROT
source organism Gallus gallus
molecule tags Endocytosis
total genus 127
structure length 290
sequence length 290
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00018 SH3_1 SH3 domain
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4bneA01
4NSWA 2Q12A 3SYVA 3ACOA 4I1QA 4DYLA 1ZWWA 2D4CA 2X3VA 3G9GA 3Q84A 3PLTA 4WPEA 3HAHA 1I4DA 3QE6A 1I49A 4ATMA 4DCNC 3HAJA 1X03A 4H8SA 1I4LA 1URUA 3QNIA 4BNEA 2X3WA 1I4TA 3CAZA 2EFKA 2EFLA 3SOGA 4AVMA 4NQIA 3M3WA 3I2WA 4FZSA 1WDZA 2Q13A 5C5BB 2X3XA 2Z0NA 3QWEA 3OK8A 4AKVA 5C5BA 2FICA 2RAJA 2YKTA 2D1LA 3HAIA 2C08A 2Z0OA 3ABHA 1X04A 2RAKA 2V0OA 3LLLA 4WPCA 2ELBA 2Z0VA 2RAIA 1Y2OA 3Q0KA 3DYTA
chains in the Genus database with same CATH superfamily
2F7OA 3C7NA 3D51A 4KIKB 3T48A 3EJPA 1TQUA 1TQTA 2FYVA 1E2UA 4AZIA 2Z0NA 4IWQA 5TKYA 2F7QA 2F1BA 3T46A 4AZHA 3ACOA 3BUQA 2OW6A 3F7WA 2OBLA 3O3OB 2YIAA 3D52A 4JLCA 4R5KA 2LXYA 4AKVA 3EJUA 2C08A 4HYBA 2ELBA 4JWIA 2YI9A 3G9GA 3ER9B 4KIKA 1I49A 1I4LA 4AZCB 5FLEX 3LMFA 1DKXA 4IWPA 4EZOA 1R34A 1E1DA 2X3XA 3EJRA 2GF4A 4EZRA 3BUIA 2KHOA 2QXLA 2NCZA 4UDYX 3CKDA 2LM0A 3EJTA 1TQWA 1GNLA 1URUA 4IM3A 2YKTA 4IM0A 2ND0A 4EZZA 3BUPA 3T4AG 4AZGA 1UPXA 2RAKA 2YL9A 1DKYA 4NSWA 1U00A 2QKWA 2F18A 3VEAA 4H6HA 2GA9D 4EZTA 3GI7A 4EZPA 1O7DC 5C5BB 4E3CA 3B53X 3EJQA 3CVRA 3UITA 2PY6A 4B9QA 1OAOA 1JQKA 3HAJA 4JNFA 3FD9A 1I4TA 1OA1A 3CAZA 4NQIA 4FZSA 4F00A 3I01A 2EX3B 4R5GA 2ALWA 3BUDA 4DYLA 2EWFA 3CV5A 2X5CA 3HAHA 2Z8YA 4EZSA 4AZ6A 3OWGA 3BVUA 4EZUA 4JWDA 5C5BA 3BLBA 3I39X 2Z0VA 3DDGA 2RAIA 4EZVA 4R5LA 4PO2A 3RV0A 1I4DA 4ATMA 3KAWA 1X03A 4H6IA 2JNSA 4IM2A 4EZXA 3VKHA 3D2FA 2N3KA 1SU6A 1PS3A 3OK8A 2D1LA 2WINM 3DDFA 1SU8A 3T47A 4JWEA 3QNJA 2QFFA 1SU7A 3SYVA 2F7RA 4R5JA 2F7PA 2GAFD 2YIVX 1HXKA 2EFKA 2EFLA 1TQSA 3M3WA 3BVWA 3HAIA 3ER8C 3LLLA 3I04A 3EJSA 2YLLA 3CZNA 3DX4A 4IW0A 4D8JA 3Q84A 2YLAA 4BNEA 4G6QA 3DX1A 1WDZA 3D4ZA 3DX2A 3VEBA 3O3MB 1X04A 4JL9A 3DPPA 1GN9A 4JN4A 3L3PA 3A98A 4I1QA 1ZWWA 2X3VA 3B52X 4R5IA 1SUFA 2YL6A 4AVMA 2Q13A 1W9MA 2WYHA 3BVTA 4JNEA 3DX0A 2YL5A 3RPMA 2Q12A 4AZBA 4M0MA 4HR1B 4WPEA 1TQVA 4DCNC 4AZ5A 2JNKA 3LVTA 1QX1A 1ZYLA 3ABHA 2RT6A 1MJGA 1HWWA 2PMRA 3Q0KA 2ZXQA 3KAVA 4E81A 1O7DB 2D4CA 3OHXM 1R33A 3PLTA 4FZPA 3QE6A 1R5EA 4UDXX 3QA8A 2X3WA 3SOGA 4AZ7A 3DX3A 3QWEA 2OO2A 3T49A 3BVXA 5E84A 3RV1A 1QWUA 2MI7A 1HTYA 1Y2OA 3KDRA 4HR1A 4EZYA 3CZSA 4NPHA 2F1AA 3I2WA 1E9VA 3B51X 5FIGA 2YI8A 2YL8A 4JWCA 2YIBA 3L3OM 1LQ7A 1QWNA 4F01A 2ND1A 3O3NB 4FZOA 4IWOA 4EZQA 3DPQA 1DKZA 4EZNA 1YWMA 2OZNB 2FICA 2WYIA 3BVVA 3D4YA 4WPCA 2OBMA 2OW7A 3DYTA 5KBPA 2O0I1 3DPOA 1OA0A 4H8SA 3BUBA 4AZCA 3ZEDA 3QNIA 1GNTA 4EZWA 4HY9A 2RAJA 3D2EA 2Z0OA 2V0OA 3ERCC 4FM3A 3D50A
chains in the Genus database with same CATH topology
4NSWA 2Q12A 3SYVA 3ACOA 4I1QA 4DYLA 1ZWWA 2D4CA 2X3VA 3G9GA 3Q84A 3PLTA 4WPEA 3HAHA 1I4DA 3QE6A 1I49A 4ATMA 4DCNC 3HAJA 1X03A 4H8SA 1I4LA 1URUA 3QNIA 4BNEA 2X3WA 1I4TA 3CAZA 2EFKA 2EFLA 3SOGA 4AVMA 4NQIA 3M3WA 3I2WA 4FZSA 1WDZA 2Q13A 5C5BB 2X3XA 2Z0NA 3QWEA 3OK8A 4AKVA 5C5BA 2FICA 2RAJA 2YKTA 2D1LA 3HAIA 2C08A 2Z0OA 3ABHA 1X04A 2RAKA 2V0OA 3LLLA 4WPCA 2ELBA 2Z0VA 2RAIA 1Y2OA 3Q0KA 3DYTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NSW A;  2Q12 A;  3SYV A;  3ACO A;  4I1Q A;  4DYL A;  1ZWW A;  2D4C A;  2X3V A;  3G9G A;  3Q84 A;  3PLT A;  4WPE A;  3HAH A;  1I4D A;  3QE6 A;  1I49 A;  4ATM A;  4DCN C;  3HAJ A;  1X03 A;  4H8S A;  1I4L A;  1URU A;  3QNI A;  4BNE A;  2X3W A;  1I4T A;  3CAZ A;  2EFK A;  2EFL A;  3SOG A;  4AVM A;  4NQI A;  3M3W A;  3I2W A;  4FZS A;  1WDZ A;  2Q13 A;  5C5B B;  2X3X A;  2Z0N A;  3QWE A;  3OK8 A;  4AKV A;  5C5B A;  2FIC A;  2RAJ A;  2YKT A;  2D1L A;  3HAI A;  2C08 A;  2Z0O A;  3ABH A;  1X04 A;  2RAK A;  2V0O A;  3LLL A;  4WPC A;  2ELB A;  2Z0V A;  2RAI A;  1Y2O A;  3Q0K A;  3DYT A; 
#chains in the Genus database with same CATH topology
 2F7O A;  3C7N A;  3D51 A;  4KIK B;  3T48 A;  3EJP A;  1TQU A;  1TQT A;  2FYV A;  1E2U A;  4AZI A;  2Z0N A;  4IWQ A;  5TKY A;  2F7Q A;  2F1B A;  3T46 A;  4AZH A;  3ACO A;  3BUQ A;  2OW6 A;  3F7W A;  2OBL A;  3O3O B;  2YIA A;  3D52 A;  4JLC A;  4R5K A;  2LXY A;  4AKV A;  3EJU A;  2C08 A;  4HYB A;  2ELB A;  4JWI A;  2YI9 A;  3G9G A;  3ER9 B;  4KIK A;  1I49 A;  1I4L A;  4AZC B;  5FLE X;  3LMF A;  1DKX A;  4IWP A;  4EZO A;  1R34 A;  1E1D A;  2X3X A;  3EJR A;  2GF4 A;  4EZR A;  3BUI A;  2KHO A;  2QXL A;  2NCZ A;  4UDY X;  3CKD A;  2LM0 A;  3EJT A;  1TQW A;  1GNL A;  1URU A;  4IM3 A;  2YKT A;  4IM0 A;  2ND0 A;  4EZZ A;  3BUP A;  3T4A G;  4AZG A;  1UPX A;  2RAK A;  2YL9 A;  1DKY A;  4NSW A;  1U00 A;  2QKW A;  2F18 A;  3VEA A;  4H6H A;  2GA9 D;  4EZT A;  3GI7 A;  4EZP A;  1O7D C;  5C5B B;  4E3C A;  3B53 X;  3EJQ A;  3CVR A;  3UIT A;  2PY6 A;  4B9Q A;  1OAO A;  1JQK A;  3HAJ A;  4JNF A;  3FD9 A;  1I4T A;  1OA1 A;  3CAZ A;  4NQI A;  4FZS A;  4F00 A;  3I01 A;  2EX3 B;  4R5G A;  2ALW A;  3BUD A;  4DYL A;  2EWF A;  3CV5 A;  2X5C A;  3HAH A;  2Z8Y A;  4EZS A;  4AZ6 A;  3OWG A;  3BVU A;  4EZU A;  4JWD A;  5C5B A;  3BLB A;  3I39 X;  2Z0V A;  3DDG A;  2RAI A;  4EZV A;  4R5L A;  4PO2 A;  3RV0 A;  1I4D A;  4ATM A;  3KAW A;  1X03 A;  4H6I A;  2JNS A;  4IM2 A;  4EZX A;  3VKH A;  3D2F A;  2N3K A;  1SU6 A;  1PS3 A;  3OK8 A;  2D1L A;  2WIN M;  3DDF A;  1SU8 A;  3T47 A;  4JWE A;  3QNJ A;  2QFF A;  1SU7 A;  3SYV A;  2F7R A;  4R5J A;  2F7P A;  2GAF D;  2YIV X;  1HXK A;  2EFK A;  2EFL A;  1TQS A;  3M3W A;  3BVW A;  3HAI A;  3ER8 C;  3LLL A;  3I04 A;  3EJS A;  2YLL A;  3CZN A;  3DX4 A;  4IW0 A;  4D8J A;  3Q84 A;  2YLA A;  4BNE A;  4G6Q A;  3DX1 A;  1WDZ A;  3D4Z A;  3DX2 A;  3VEB A;  3O3M B;  1X04 A;  4JL9 A;  3DPP A;  1GN9 A;  4JN4 A;  3L3P A;  3A98 A;  4I1Q A;  1ZWW A;  2X3V A;  3B52 X;  4R5I A;  1SUF A;  2YL6 A;  4AVM A;  2Q13 A;  1W9M A;  2WYH A;  3BVT A;  4JNE A;  3DX0 A;  2YL5 A;  3RPM A;  2Q12 A;  4AZB A;  4M0M A;  4HR1 B;  4WPE A;  1TQV A;  4DCN C;  4AZ5 A;  2JNK A;  3LVT A;  1QX1 A;  1ZYL A;  3ABH A;  2RT6 A;  1MJG A;  1HWW A;  2PMR A;  3Q0K A;  2ZXQ A;  3KAV A;  4E81 A;  1O7D B;  2D4C A;  3OHX M;  1R33 A;  3PLT A;  4FZP A;  3QE6 A;  1R5E A;  4UDX X;  3QA8 A;  2X3W A;  3SOG A;  4AZ7 A;  3DX3 A;  3QWE A;  2OO2 A;  3T49 A;  3BVX A;  5E84 A;  3RV1 A;  1QWU A;  2MI7 A;  1HTY A;  1Y2O A;  3KDR A;  4HR1 A;  4EZY A;  3CZS A;  4NPH A;  2F1A A;  3I2W A;  1E9V A;  3B51 X;  5FIG A;  2YI8 A;  2YL8 A;  4JWC A;  2YIB A;  3L3O M;  1LQ7 A;  1QWN A;  4F01 A;  2ND1 A;  3O3N B;  4FZO A;  4IWO A;  4EZQ A;  3DPQ A;  1DKZ A;  4EZN A;  1YWM A;  2OZN B;  2FIC A;  2WYI A;  3BVV A;  3D4Y A;  4WPC A;  2OBM A;  2OW7 A;  3DYT A;  5KBP A;  2O0I 1;  3DPO A;  1OA0 A;  4H8S A;  3BUB A;  4AZC A;  3ZED A;  3QNI A;  1GNT A;  4EZW A;  4HY9 A;  2RAJ A;  3D2E A;  2Z0O A;  2V0O A;  3ERC C;  4FM3 A;  3D50 A; 
#chains in the Genus database with same CATH homology
 4NSW A;  2Q12 A;  3SYV A;  3ACO A;  4I1Q A;  4DYL A;  1ZWW A;  2D4C A;  2X3V A;  3G9G A;  3Q84 A;  3PLT A;  4WPE A;  3HAH A;  1I4D A;  3QE6 A;  1I49 A;  4ATM A;  4DCN C;  3HAJ A;  1X03 A;  4H8S A;  1I4L A;  1URU A;  3QNI A;  4BNE A;  2X3W A;  1I4T A;  3CAZ A;  2EFK A;  2EFL A;  3SOG A;  4AVM A;  4NQI A;  3M3W A;  3I2W A;  4FZS A;  1WDZ A;  2Q13 A;  5C5B B;  2X3X A;  2Z0N A;  3QWE A;  3OK8 A;  4AKV A;  5C5B A;  2FIC A;  2RAJ A;  2YKT A;  2D1L A;  3HAI A;  2C08 A;  2Z0O A;  3ABH A;  1X04 A;  2RAK A;  2V0O A;  3LLL A;  4WPC A;  2ELB A;  2Z0V A;  2RAI A;  1Y2O A;  3Q0K A;  3DYT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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