4BQ6D

Crystal structure of the rgmb-neo1 complex form 1
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
153
structure length
148
Chain Sequence
PHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKAHHGCTDQKVYQAVTDDLPAAFVDGTTSGGDSDAKSLRIVEYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLSER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
molecule keywords NEOGENIN
publication title Structure of the Repulsive Guidance Molecule (Rgm)-Neogenin Signaling Hub
pubmed doi rcsb
source organism Mus musculus
total genus 33
structure length 148
sequence length 153
chains with identical sequence F
ec nomenclature
pdb deposition date 2013-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF06534 RGM_C Repulsive guidance molecule (RGM) C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Mog1/PsbP, alpha/beta/alpha sandwich 4bq6D00
1V2BA 2XB3A 3JCUP 1JHSA 2VU4A 3HLZA 4RTHA 1TU1A 3V7BA 4UI2D 4BQ8C 4BQ6D 4RTIA 1EQ6A 3LYDA 2LNJA
chains in the Genus database with same CATH superfamily
4L9HA 3NR5A 3WA5B 3HLZA 4M5FB 4BQ8C 4LUQC 1VR8A 4UI2D 3BCYA 4RTHA 1TU1A 4ESQA 4N80B 4BQ6D 4L9CA 4OUHA 2XB3A 2VU4A 3V7BA 4RTIA 4N88B 3JCUP 3LYDA 1EQ6A 2LNJA 2VT8A 1JHSA 4N7SB 1V2BA
chains in the Genus database with same CATH topology
1V2BA 2XB3A 3JCUP 1JHSA 2VU4A 3HLZA 4RTHA 1TU1A 3V7BA 4UI2D 4BQ8C 4BQ6D 4RTIA 1EQ6A 3LYDA 2LNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V2B A;  2XB3 A;  3JCU P;  1JHS A;  2VU4 A;  3HLZ A;  4RTH A;  1TU1 A;  3V7B A;  4UI2 D;  4BQ8 C;  4BQ6 D;  4RTI A;  1EQ6 A;  3LYD A;  2LNJ A; 
#chains in the Genus database with same CATH topology
 4L9H A;  3NR5 A;  3WA5 B;  3HLZ A;  4M5F B;  4BQ8 C;  4LUQ C;  1VR8 A;  4UI2 D;  3BCY A;  4RTH A;  1TU1 A;  4ESQ A;  4N80 B;  4BQ6 D;  4L9C A;  4OUH A;  2XB3 A;  2VU4 A;  3V7B A;  4RTI A;  4N88 B;  3JCU P;  3LYD A;  1EQ6 A;  2LNJ A;  2VT8 A;  1JHS A;  4N7S B;  1V2B A; 
#chains in the Genus database with same CATH homology
 1V2B A;  2XB3 A;  3JCU P;  1JHS A;  2VU4 A;  3HLZ A;  4RTH A;  1TU1 A;  3V7B A;  4UI2 D;  4BQ8 C;  4BQ6 D;  4RTI A;  1EQ6 A;  3LYD A;  2LNJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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