4BQ8C

Crystal structure of the rgmb-neo1 complex form 3
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
166
structure length
161
Chain Sequence
PHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKAHHGCTDQKVYQAVTDDLPAAFVDGTTSGGAKSLRIVEREHYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLSERIDDGQGQVSAILG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
molecule keywords NEOGENIN
publication title Structure of the Repulsive Guidance Molecule (Rgm)-Neogenin Signaling Hub
pubmed doi rcsb
source organism Mus musculus
total genus 35
structure length 161
sequence length 166
ec nomenclature
pdb deposition date 2013-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF06534 RGM_C Repulsive guidance molecule (RGM) C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Mog1/PsbP, alpha/beta/alpha sandwich 4bq8C00
3LYDA 3V7BA 4UI2D 4BQ8C 2LNJA 1V2BA 1JHSA 2XB3A 4BQ6D 1EQ6A 1TU1A 2VU4A 3JCUP 4RTIA 4RTHA 3HLZA
chains in the Genus database with same CATH superfamily
3LYDA 3BCYA 4L9HA 2LNJA 4ESQA 4BQ6D 1EQ6A 4LUQC 1TU1A 3NR5A 4RTIA 4N80B 2VT8A 3V7BA 4M5FB 4BQ8C 4N7SB 4L9CA 1JHSA 2XB3A 3WA5B 2VU4A 4RTHA 3HLZA 4N88B 4UI2D 1VR8A 4OUHA 1V2BA 3JCUP
chains in the Genus database with same CATH topology
3LYDA 3V7BA 4UI2D 4BQ8C 2LNJA 1V2BA 1JHSA 2XB3A 4BQ6D 1EQ6A 1TU1A 2VU4A 3JCUP 4RTIA 4RTHA 3HLZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LYD A;  3V7B A;  4UI2 D;  4BQ8 C;  2LNJ A;  1V2B A;  1JHS A;  2XB3 A;  4BQ6 D;  1EQ6 A;  1TU1 A;  2VU4 A;  3JCU P;  4RTI A;  4RTH A;  3HLZ A; 
#chains in the Genus database with same CATH topology
 3LYD A;  3BCY A;  4L9H A;  2LNJ A;  4ESQ A;  4BQ6 D;  1EQ6 A;  4LUQ C;  1TU1 A;  3NR5 A;  4RTI A;  4N80 B;  2VT8 A;  3V7B A;  4M5F B;  4BQ8 C;  4N7S B;  4L9C A;  1JHS A;  2XB3 A;  3WA5 B;  2VU4 A;  4RTH A;  3HLZ A;  4N88 B;  4UI2 D;  1VR8 A;  4OUH A;  1V2B A;  3JCU P; 
#chains in the Genus database with same CATH homology
 3LYD A;  3V7B A;  4UI2 D;  4BQ8 C;  2LNJ A;  1V2B A;  1JHS A;  2XB3 A;  4BQ6 D;  1EQ6 A;  1TU1 A;  2VU4 A;  3JCU P;  4RTI A;  4RTH A;  3HLZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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