4BY1X

Elongating rna polymerase ii-bye1 tld complex soaked with ampcpp
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
134
structure length
116
Chain Sequence
EKEHKLRYNAEKMFSTLSKFIVPETIEAVISISQEFAHNLEEELYKACLNVEKIYTEKVRSLYSNLKDKKNLELKAHVVELPLNKLVNMNASELANPDLQEFKEKRDKIILENFIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
publication title Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 21
structure length 116
sequence length 134
ec nomenclature
pdb deposition date 2013-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF07500 TFIIS_M Transcription factor S-II (TFIIS), central domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.30 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Transcription elongation factor S-II, central domain 4by1X00
2DMEA 3PO3S 4BY1X 4BY7X 4BXXX 3GTMS 3NDQA 1ENWA 2LW4A
chains in the Genus database with same CATH superfamily
2IW8B 2IN3A 4BCKB 4EOOB 5IDNB 1IREB 4OR5B 1AISB 3QYGB 5HQ0B 3MI9B 4HLQA 5L2WB 3BHTB 1GUXA 1UGRB 1UGQB 3QXEB 4EOSB 4EOKB 4CFWB 3TW6A 4BBSM 1PKDB 2IW6B 3DJBA 1N4MA 2CJMB 3MY5B 1O9KB 4F7SB 5HBEB 2C5VB 1AD6A 4MIMA 2WHBB 4NC6A 3VKHA 2JGZB 4EC9B 3MIAB 2CZ7B 2I40B 2PJQA 4OGRB 3H4CA 1ZP2A 2WIPB 2WJ9A 4BCQB 4EC8B 2ZPHB 5CYIB 4BXXX 2G9XB 2IVXA 5CEIB 5IF1B 5FGKB 3HB9A 4ROEA 2D0QB 1FKMA 1OI9B 3A8HB 3TNWB 3BHVB 4FM4B 1GH6B 5HBJB 2C4GB 3BHUB 2ZCFB 4CFXB 1OL1B 3QHRB 1OL2B 5HVYB 4LOCA 2WIHB 3QWLA 5EFQB 1OGUB 1H25B 4FX3B 3F5XB 3A8MB 3HHTB 2DD4B 4Z6YA 2C6TB 3DL1A 4UN0A 4CFUD 3LQ5B 5I5ZB 1URCB 1W98B 2WEVB 2CZ0B 1XO2A 4BCIB 4F7NB 4OB1B 4HNUA 4BCOB 2QF7A 2KR6A 3QZ5B 1KXUA 1ENWA 2QDYB 3EIDB 1UGSB 2WPAB 2KMGA 1G3NC 1VYWB 1H28B 4AKHA 4MFDA 4CFVB 3RGFB 3VYHB 4HNTA 3TW7A 2CCHB 1JSTB 1OIUB 4ELLA 4BY1X 2B9RA 3BG9A 2W9ZA 4BCFB 2W99A 3BG5A 4JX4A 4F7JB 3DDPB 2DD5B 2BS4A 4ZGEB 4EONB 4OB2B 4F6UB 4YOZA 4I3ZB 4QSHA 3WVDB 2CZ6B 2V22B 1O9KA 2UZLB 2CZ1B 2W2HA 4CFUB 1E7PA 3PO3S 4YOOA 2QGSA 5HNBB 1UNLD 2BS3A 2ZPIB 3EOCB 1AHJB 4YOSA 2PK9B 4CRLB 1OIYB 4EORB 1P5EB 3BLRB 4EOIB 1UNHD 2DXBB 4JX5A 5IDPB 4II5B 4BCJB 2BPMB 2ZPFB 1JOWA 5IHYA 2LW4A 5DQWA 4CFMB 1QMZB 3GTMS 1C9BA 1UNGD 1JSUB 2C5NB 2WMAB 2CCIB 4F6WB 2CYZB 4OB3B 1H1RB 3X25B 1QLBA 3HZJA 1H26B 3A8OB 2QFZA 3BLHB 2AHJB 4BY7X 2UZEB 3X24B 2WXVB 1H27B 3KHIA 1H1SB 3BLQB 4HNVA 4ZGDB 3POMA 3G33B 4BCGB 5HBHB 4M6VA 5ICPB 4JX6A 2DXCB 4IMYB 4BCND 2PK2A 2QQ8A 5DQVA 4BCMB 2PMIB 1H4LD 1GUXB 4EOLB 4G6LB 3O0GD 4YC3B 3X28B 2G77A 1TD6A 3DOGB 5BNJB 2UUEB 2ZPEB 3TNIB 1TFBA 2BKZB 2EUFA 4EOMB 1D3UB 2UZBB 3DTOA 3TNHB 3K7AM 3QZ9B 2IW9B 4BCHB 2I53A 4OB0B 1FVVB 2F2CA 2DMEA 2X1NB 2C5XB 3HO8A 2R7GA 2UZDB 3DDQB 4NSTB 2PHGA 4EOQB 3A8GB 3MY1B 4AKIA 4CFNB 4BBRM 4BCMD 3X20B 3VYGB 1OKVB 1BU2A 2BS2A 4BCNB 5LQFB 2WMBB 5LMKB 1UGPB 1H1QB 4ELJA 5ACBA 4F7LB 1H24B 3A8LB 2ZZDB 4Y72B 3BG3A 2WFYB 1F5QB 1FINB 3QYHB 1OKWB 2ZPBB 4CXAB 1VOLA 4AKGA 5EJCA 4F70B 4EOJB 4BCPB 3QYBA 2ZPGB 4F6SB 1V29B 2DPPB 2C5OB 4KRDB 3QYEA 1GY3B 4TTHA 4MFEA 2QDJA 4AI6A 3VKGA 3QHWB 4ZGJB 3EJ1B 2W96A 3X26B 3WVEB 4HL4A 4BCQD 3M03A 4RODA 4KRCB 1VINA 3B57A 3NDQA 3HBLA 4ROCA 1H1PB 1E9HB 1JKWA 3TN8B 2W9FA 4EOPB
chains in the Genus database with same CATH topology
2DMEA 3PO3S 4BY1X 4BY7X 4BXXX 3GTMS 3NDQA 1ENWA 2LW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DME A;  3PO3 S;  4BY1 X;  4BY7 X;  4BXX X;  3GTM S;  3NDQ A;  1ENW A;  2LW4 A; 
#chains in the Genus database with same CATH topology
 2IW8 B;  2IN3 A;  4BCK B;  4EOO B;  5IDN B;  1IRE B;  4OR5 B;  1AIS B;  3QYG B;  5HQ0 B;  3MI9 B;  4HLQ A;  5L2W B;  3BHT B;  1GUX A;  1UGR B;  1UGQ B;  3QXE B;  4EOS B;  4EOK B;  4CFW B;  3TW6 A;  4BBS M;  1PKD B;  2IW6 B;  3DJB A;  1N4M A;  2CJM B;  3MY5 B;  1O9K B;  4F7S B;  5HBE B;  2C5V B;  1AD6 A;  4MIM A;  2WHB B;  4NC6 A;  3VKH A;  2JGZ B;  4EC9 B;  3MIA B;  2CZ7 B;  2I40 B;  2PJQ A;  4OGR B;  3H4C A;  1ZP2 A;  2WIP B;  2WJ9 A;  4BCQ B;  4EC8 B;  2ZPH B;  5CYI B;  4BXX X;  2G9X B;  2IVX A;  5CEI B;  5IF1 B;  5FGK B;  3HB9 A;  4ROE A;  2D0Q B;  1FKM A;  1OI9 B;  3A8H B;  3TNW B;  3BHV B;  4FM4 B;  1GH6 B;  5HBJ B;  2C4G B;  3BHU B;  2ZCF B;  4CFX B;  1OL1 B;  3QHR B;  1OL2 B;  5HVY B;  4LOC A;  2WIH B;  3QWL A;  5EFQ B;  1OGU B;  1H25 B;  4FX3 B;  3F5X B;  3A8M B;  3HHT B;  2DD4 B;  4Z6Y A;  2C6T B;  3DL1 A;  4UN0 A;  4CFU D;  3LQ5 B;  5I5Z B;  1URC B;  1W98 B;  2WEV B;  2CZ0 B;  1XO2 A;  4BCI B;  4F7N B;  4OB1 B;  4HNU A;  4BCO B;  2QF7 A;  2KR6 A;  3QZ5 B;  1KXU A;  1ENW A;  2QDY B;  3EID B;  1UGS B;  2WPA B;  2KMG A;  1G3N C;  1VYW B;  1H28 B;  4AKH A;  4MFD A;  4CFV B;  3RGF B;  3VYH B;  4HNT A;  3TW7 A;  2CCH B;  1JST B;  1OIU B;  4ELL A;  4BY1 X;  2B9R A;  3BG9 A;  2W9Z A;  4BCF B;  2W99 A;  3BG5 A;  4JX4 A;  4F7J B;  3DDP B;  2DD5 B;  2BS4 A;  4ZGE B;  4EON B;  4OB2 B;  4F6U B;  4YOZ A;  4I3Z B;  4QSH A;  3WVD B;  2CZ6 B;  2V22 B;  1O9K A;  2UZL B;  2CZ1 B;  2W2H A;  4CFU B;  1E7P A;  3PO3 S;  4YOO A;  2QGS A;  5HNB B;  1UNL D;  2BS3 A;  2ZPI B;  3EOC B;  1AHJ B;  4YOS A;  2PK9 B;  4CRL B;  1OIY B;  4EOR B;  1P5E B;  3BLR B;  4EOI B;  1UNH D;  2DXB B;  4JX5 A;  5IDP B;  4II5 B;  4BCJ B;  2BPM B;  2ZPF B;  1JOW A;  5IHY A;  2LW4 A;  5DQW A;  4CFM B;  1QMZ B;  3GTM S;  1C9B A;  1UNG D;  1JSU B;  2C5N B;  2WMA B;  2CCI B;  4F6W B;  2CYZ B;  4OB3 B;  1H1R B;  3X25 B;  1QLB A;  3HZJ A;  1H26 B;  3A8O B;  2QFZ A;  3BLH B;  2AHJ B;  4BY7 X;  2UZE B;  3X24 B;  2WXV B;  1H27 B;  3KHI A;  1H1S B;  3BLQ B;  4HNV A;  4ZGD B;  3POM A;  3G33 B;  4BCG B;  5HBH B;  4M6V A;  5ICP B;  4JX6 A;  2DXC B;  4IMY B;  4BCN D;  2PK2 A;  2QQ8 A;  5DQV A;  4BCM B;  2PMI B;  1H4L D;  1GUX B;  4EOL B;  4G6L B;  3O0G D;  4YC3 B;  3X28 B;  2G77 A;  1TD6 A;  3DOG B;  5BNJ B;  2UUE B;  2ZPE B;  3TNI B;  1TFB A;  2BKZ B;  2EUF A;  4EOM B;  1D3U B;  2UZB B;  3DTO A;  3TNH B;  3K7A M;  3QZ9 B;  2IW9 B;  4BCH B;  2I53 A;  4OB0 B;  1FVV B;  2F2C A;  2DME A;  2X1N B;  2C5X B;  3HO8 A;  2R7G A;  2UZD B;  3DDQ B;  4NST B;  2PHG A;  4EOQ B;  3A8G B;  3MY1 B;  4AKI A;  4CFN B;  4BBR M;  4BCM D;  3X20 B;  3VYG B;  1OKV B;  1BU2 A;  2BS2 A;  4BCN B;  5LQF B;  2WMB B;  5LMK B;  1UGP B;  1H1Q B;  4ELJ A;  5ACB A;  4F7L B;  1H24 B;  3A8L B;  2ZZD B;  4Y72 B;  3BG3 A;  2WFY B;  1F5Q B;  1FIN B;  3QYH B;  1OKW B;  2ZPB B;  4CXA B;  1VOL A;  4AKG A;  5EJC A;  4F70 B;  4EOJ B;  4BCP B;  3QYB A;  2ZPG B;  4F6S B;  1V29 B;  2DPP B;  2C5O B;  4KRD B;  3QYE A;  1GY3 B;  4TTH A;  4MFE A;  2QDJ A;  4AI6 A;  3VKG A;  3QHW B;  4ZGJ B;  3EJ1 B;  2W96 A;  3X26 B;  3WVE B;  4HL4 A;  4BCQ D;  3M03 A;  4ROD A;  4KRC B;  1VIN A;  3B57 A;  3NDQ A;  3HBL A;  4ROC A;  1H1P B;  1E9H B;  1JKW A;  3TN8 B;  2W9F A;  4EOP B; 
#chains in the Genus database with same CATH homology
 2DME A;  3PO3 S;  4BY1 X;  4BY7 X;  4BXX X;  3GTM S;  3NDQ A;  1ENW A;  2LW4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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