4C1RA

Bacteroides thetaiotaomicron vpi-5482 mannosyl-6-phosphatase bt3783
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
284
structure length
267
Chain Sequence
SLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEALPGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIGKKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGTFNNFDPNSFTESRIDHIFVSPSFHVKRYGVLTDTYRSVREAYEARTPSDHFPVKVELVF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords MANNOSYL-6-PHOSPHATASE
publication title Human Gut Bacteroidetes Can Utilize Yeast Mannan Through a Selfish Mechanism.
pubmed doi rcsb
source organism Bacteroides thetaiotaomicron vpi-5482
total genus 90
structure length 267
sequence length 284
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 4c1rA00
5INQA 1DE9A 1NTFA 3I48A 1DE8A 3G1KA 4GZ2A 5A7IA 3NGQA 5DG0A 3W2YA 1AKOA 3G3CA 3MPRA 4A9CA 4F1RA 2A41B 2F1NA 3L1WA 4IEMA 1HD7A 3I46A 2V0RA 5INLA 4QHDA 5INOA 3MTCA 4LNDA 3G0AA 3G91A 3G0RA 4L1ZA 4RUWA 1DEWA 1WDUA 3G3YA 3NGNA 3G4TA 4CMLA 2DDRA 4GEWA 2O3HA 4F1IA 4QHEA 3GA6A 5DFJA 3W2XA 4B5HA 5DV4A 2DDSA 4FPVA 3U8UA 5CFEA 4PUQA 4K6LF 2DNJA 3G38A 1I9ZA 4QH9A 3NR8A 1BIXA 2UYRX 1DNKA 5DFFA 2IMQX 3G2CA 5DFIA 4L1YA 1ZWXA 2JC5A 5J8NA 1E9NA 4GZ0A 3I41A 4B5FA 3N9VA 4B5MA 2A3ZB 2A40B 3DNIA 3FZIA 4FVAA 3TEBA 5J3PA 2D1KB 5DV2A 2VOAA 3NGOA 4F1HA 4L20A 1Y21A 2V0SA 2EI9A 3G8VA 3K55A 4AWNA 2JC4A 3CJCD 2ISIA 5J42A 3G00A 3G2DA 2J63A 2A42B 3G6SA 4GYZA 5INMA 4GZ1A 3W3DB 1VYBA 5CFGA 5J3SA 1SI6X 1YJHA 2F2FB 2O3CA 4B5JA 1ATND 2XSWA 5HT2A 5A7JA 4L21A 5INKA 1SR4B 4JG3A 5DFHA 3WCXA 4B5GA 3I5VA 4CMNA 4F1HB 5INNA 2DDTA 1I9YA 5J3ZA 4C1RA 5INPA 4B5IA 5EWTA
chains in the Genus database with same CATH superfamily
5INQA 1DE9A 1NTFA 3I48A 1DE8A 3G1KA 4GZ2A 5A7IA 3NGQA 5DG0A 3W2YA 1AKOA 3G3CA 3MPRA 4A9CA 4F1RA 2A41B 2F1NA 3L1WA 4IEMA 1HD7A 3I46A 2V0RA 5INLA 4QHDA 5INOA 3MTCA 4LNDA 3G0AA 3G91A 3G0RA 4L1ZA 4RUWA 1DEWA 1WDUA 3G3YA 3NGNA 3G4TA 4CMLA 2DDRA 4GEWA 2O3HA 4F1IA 4QHEA 3GA6A 5DFJA 3W2XA 4B5HA 5DV4A 2DDSA 4FPVA 3U8UA 5CFEA 4PUQA 4K6LF 2DNJA 3G38A 1I9ZA 4QH9A 3NR8A 1BIXA 2UYRX 1DNKA 5DFFA 2IMQX 3G2CA 5DFIA 4L1YA 1ZWXA 2JC5A 5J8NA 1E9NA 4GZ0A 3I41A 4B5FA 3N9VA 4B5MA 2A3ZB 2A40B 3DNIA 3FZIA 4FVAA 3TEBA 5J3PA 2D1KB 5DV2A 2VOAA 3NGOA 4F1HA 4L20A 1Y21A 2V0SA 2EI9A 3G8VA 3K55A 4AWNA 2JC4A 3CJCD 2ISIA 5J42A 3G00A 3G2DA 2J63A 2A42B 3G6SA 4GYZA 5INMA 4GZ1A 3W3DB 1VYBA 5CFGA 5J3SA 1SI6X 1YJHA 2F2FB 2O3CA 4B5JA 1ATND 2XSWA 5HT2A 5A7JA 4L21A 5INKA 1SR4B 4JG3A 5DFHA 3WCXA 4B5GA 3I5VA 4CMNA 4F1HB 5INNA 2DDTA 1I9YA 5J3ZA 4C1RA 5INPA 4B5IA 5EWTA
chains in the Genus database with same CATH topology
5INQA 1DE9A 1NTFA 3I48A 1DE8A 3G1KA 4GZ2A 5A7IA 3NGQA 5DG0A 3W2YA 1AKOA 3G3CA 3MPRA 4A9CA 4F1RA 2A41B 2F1NA 3L1WA 4IEMA 1HD7A 3I46A 2V0RA 5INLA 4QHDA 5INOA 3MTCA 4LNDA 3G0AA 3G91A 3G0RA 4L1ZA 4RUWA 1DEWA 1WDUA 3G3YA 3NGNA 3G4TA 4CMLA 2DDRA 4GEWA 2O3HA 4F1IA 4QHEA 3GA6A 5DFJA 3W2XA 4B5HA 5DV4A 2DDSA 4FPVA 3U8UA 5CFEA 4PUQA 4K6LF 2DNJA 3G38A 1I9ZA 4QH9A 3NR8A 1BIXA 2UYRX 1DNKA 5DFFA 2IMQX 3G2CA 5DFIA 4L1YA 1ZWXA 2JC5A 5J8NA 1E9NA 4GZ0A 3I41A 4B5FA 3N9VA 4B5MA 2A3ZB 2A40B 3DNIA 3FZIA 4FVAA 3TEBA 5J3PA 2D1KB 5DV2A 2VOAA 3NGOA 4F1HA 4L20A 1Y21A 2V0SA 2EI9A 3G8VA 3K55A 4AWNA 2JC4A 3CJCD 2ISIA 5J42A 3G00A 3G2DA 2J63A 2A42B 3G6SA 4GYZA 5INMA 4GZ1A 3W3DB 1VYBA 5CFGA 5J3SA 1SI6X 1YJHA 2F2FB 2O3CA 4B5JA 1ATND 2XSWA 5HT2A 5A7JA 4L21A 5INKA 1SR4B 4JG3A 5DFHA 3WCXA 4B5GA 3I5VA 4CMNA 4F1HB 5INNA 2DDTA 1I9YA 5J3ZA 4C1RA 5INPA 4B5IA 5EWTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5INQ A;  1DE9 A;  1NTF A;  3I48 A;  1DE8 A;  3G1K A;  4GZ2 A;  5A7I A;  3NGQ A;  5DG0 A;  3W2Y A;  1AKO A;  3G3C A;  3MPR A;  4A9C A;  4F1R A;  2A41 B;  2F1N A;  3L1W A;  4IEM A;  1HD7 A;  3I46 A;  2V0R A;  5INL A;  4QHD A;  5INO A;  3MTC A;  4LND A;  3G0A A;  3G91 A;  3G0R A;  4L1Z A;  4RUW A;  1DEW A;  1WDU A;  3G3Y A;  3NGN A;  3G4T A;  4CML A;  2DDR A;  4GEW A;  2O3H A;  4F1I A;  4QHE A;  3GA6 A;  5DFJ A;  3W2X A;  4B5H A;  5DV4 A;  2DDS A;  4FPV A;  3U8U A;  5CFE A;  4PUQ A;  4K6L F;  2DNJ A;  3G38 A;  1I9Z A;  4QH9 A;  3NR8 A;  1BIX A;  2UYR X;  1DNK A;  5DFF A;  2IMQ X;  3G2C A;  5DFI A;  4L1Y A;  1ZWX A;  2JC5 A;  5J8N A;  1E9N A;  4GZ0 A;  3I41 A;  4B5F A;  3N9V A;  4B5M A;  2A3Z B;  2A40 B;  3DNI A;  3FZI A;  4FVA A;  3TEB A;  5J3P A;  2D1K B;  5DV2 A;  2VOA A;  3NGO A;  4F1H A;  4L20 A;  1Y21 A;  2V0S A;  2EI9 A;  3G8V A;  3K55 A;  4AWN A;  2JC4 A;  3CJC D;  2ISI A;  5J42 A;  3G00 A;  3G2D A;  2J63 A;  2A42 B;  3G6S A;  4GYZ A;  5INM A;  4GZ1 A;  3W3D B;  1VYB A;  5CFG A;  5J3S A;  1SI6 X;  1YJH A;  2F2F B;  2O3C A;  4B5J A;  1ATN D;  2XSW A;  5HT2 A;  5A7J A;  4L21 A;  5INK A;  1SR4 B;  4JG3 A;  5DFH A;  3WCX A;  4B5G A;  3I5V A;  4CMN A;  4F1H B;  5INN A;  2DDT A;  1I9Y A;  5J3Z A;  4C1R A;  5INP A;  4B5I A;  5EWT A; 
#chains in the Genus database with same CATH topology
 5INQ A;  1DE9 A;  1NTF A;  3I48 A;  1DE8 A;  3G1K A;  4GZ2 A;  5A7I A;  3NGQ A;  5DG0 A;  3W2Y A;  1AKO A;  3G3C A;  3MPR A;  4A9C A;  4F1R A;  2A41 B;  2F1N A;  3L1W A;  4IEM A;  1HD7 A;  3I46 A;  2V0R A;  5INL A;  4QHD A;  5INO A;  3MTC A;  4LND A;  3G0A A;  3G91 A;  3G0R A;  4L1Z A;  4RUW A;  1DEW A;  1WDU A;  3G3Y A;  3NGN A;  3G4T A;  4CML A;  2DDR A;  4GEW A;  2O3H A;  4F1I A;  4QHE A;  3GA6 A;  5DFJ A;  3W2X A;  4B5H A;  5DV4 A;  2DDS A;  4FPV A;  3U8U A;  5CFE A;  4PUQ A;  4K6L F;  2DNJ A;  3G38 A;  1I9Z A;  4QH9 A;  3NR8 A;  1BIX A;  2UYR X;  1DNK A;  5DFF A;  2IMQ X;  3G2C A;  5DFI A;  4L1Y A;  1ZWX A;  2JC5 A;  5J8N A;  1E9N A;  4GZ0 A;  3I41 A;  4B5F A;  3N9V A;  4B5M A;  2A3Z B;  2A40 B;  3DNI A;  3FZI A;  4FVA A;  3TEB A;  5J3P A;  2D1K B;  5DV2 A;  2VOA A;  3NGO A;  4F1H A;  4L20 A;  1Y21 A;  2V0S A;  2EI9 A;  3G8V A;  3K55 A;  4AWN A;  2JC4 A;  3CJC D;  2ISI A;  5J42 A;  3G00 A;  3G2D A;  2J63 A;  2A42 B;  3G6S A;  4GYZ A;  5INM A;  4GZ1 A;  3W3D B;  1VYB A;  5CFG A;  5J3S A;  1SI6 X;  1YJH A;  2F2F B;  2O3C A;  4B5J A;  1ATN D;  2XSW A;  5HT2 A;  5A7J A;  4L21 A;  5INK A;  1SR4 B;  4JG3 A;  5DFH A;  3WCX A;  4B5G A;  3I5V A;  4CMN A;  4F1H B;  5INN A;  2DDT A;  1I9Y A;  5J3Z A;  4C1R A;  5INP A;  4B5I A;  5EWT A; 
#chains in the Genus database with same CATH homology
 5INQ A;  1DE9 A;  1NTF A;  3I48 A;  1DE8 A;  3G1K A;  4GZ2 A;  5A7I A;  3NGQ A;  5DG0 A;  3W2Y A;  1AKO A;  3G3C A;  3MPR A;  4A9C A;  4F1R A;  2A41 B;  2F1N A;  3L1W A;  4IEM A;  1HD7 A;  3I46 A;  2V0R A;  5INL A;  4QHD A;  5INO A;  3MTC A;  4LND A;  3G0A A;  3G91 A;  3G0R A;  4L1Z A;  4RUW A;  1DEW A;  1WDU A;  3G3Y A;  3NGN A;  3G4T A;  4CML A;  2DDR A;  4GEW A;  2O3H A;  4F1I A;  4QHE A;  3GA6 A;  5DFJ A;  3W2X A;  4B5H A;  5DV4 A;  2DDS A;  4FPV A;  3U8U A;  5CFE A;  4PUQ A;  4K6L F;  2DNJ A;  3G38 A;  1I9Z A;  4QH9 A;  3NR8 A;  1BIX A;  2UYR X;  1DNK A;  5DFF A;  2IMQ X;  3G2C A;  5DFI A;  4L1Y A;  1ZWX A;  2JC5 A;  5J8N A;  1E9N A;  4GZ0 A;  3I41 A;  4B5F A;  3N9V A;  4B5M A;  2A3Z B;  2A40 B;  3DNI A;  3FZI A;  4FVA A;  3TEB A;  5J3P A;  2D1K B;  5DV2 A;  2VOA A;  3NGO A;  4F1H A;  4L20 A;  1Y21 A;  2V0S A;  2EI9 A;  3G8V A;  3K55 A;  4AWN A;  2JC4 A;  3CJC D;  2ISI A;  5J42 A;  3G00 A;  3G2D A;  2J63 A;  2A42 B;  3G6S A;  4GYZ A;  5INM A;  4GZ1 A;  3W3D B;  1VYB A;  5CFG A;  5J3S A;  1SI6 X;  1YJH A;  2F2F B;  2O3C A;  4B5J A;  1ATN D;  2XSW A;  5HT2 A;  5A7J A;  4L21 A;  5INK A;  1SR4 B;  4JG3 A;  5DFH A;  3WCX A;  4B5G A;  3I5V A;  4CMN A;  4F1H B;  5INN A;  2DDT A;  1I9Y A;  5J3Z A;  4C1R A;  5INP A;  4B5I A;  5EWT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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