4C1YB

Crystal structure of fucose binding lectin from aspergillus fumigatus (afl) in complex with b-methylfucoside
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
314
structure length
314
Chain Sequence
STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords FUCOSE-SPECIFIC LECTIN FLEA
publication title Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent.
pubmed doi rcsb
source organism Aspergillus fumigatus
total genus 72
structure length 314
sequence length 314
chains with identical sequence C, D
ec nomenclature
pdb deposition date 2013-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.70 Mainly Beta 6 Propeller Neuraminidase Fucose-specific lectin 4c1yB00
4D4UA 1IUCA 1IUBA 4AGTA 4D52A 4D52C 5EO8A 4C1YA 4C1YB 4D52B 5EO7A 5H47A 1OFZA 4AH4A 4AHAA 4UOUA 4CSDA 4AGIA
chains in the Genus database with same CATH superfamily
4XJUA 4H53A 3TIBA 4K1HA 4ZLRA 3U0SA 1W1XA 1N6EA 1V3BA 2H2UA 4FVKA 1NSCA 4FPYA 2DG1A 2DSOA 3A9GA 1MS1A 4FPJA 4DGRA 3O9JA 1MZ5A 2W8BB 1DILA 4X6KA 3A72A 2F10A 3S94A 4C1YB 2CMLA 2YA7A 1X2JA 4D8SA 4WA3A 1B9SA 2ZB6A 5M1ZA 2FLUX 4D52B 1INWA 2W8BA 2XZKA 2Z32A 1IVEA 2BZDA 2RKCA 4ZY3A 3LI5A 4C1YA 3K36A 4X4AA 4IQKA 5FWWA 2YDTA 2IAPA 4D52A 1SNTA 5GTQA 5FNQA 4XMBA 3UC1A 2VWDA 1X2RA 4FP3A 4UOUA 1CRUA 3ALWA 3ALXA 5FZNA 2XZIA 1USRA 4DG6A 4NC5A 4XMAA 4CPYA 2HTUA 2AEPA 3O4PA 4GNBA 4IYGA 3NSSA 2AGSA 2QWIA 1V3CA 3CL2A 1F8DA 5D9CA 1E8UA 4QN6A 2F29A 2GVVA 4FJ6A 1V04A 3WW9A 2ZWAA 3B69A 4MWRA 4YZ3A 4WA5A 1NNCA 4MJVA 4MWYA 4KS4A 4CH9A 4B7QA 4FZHA 3IAXA 5FNTA 2QWJA 4WEFA 4IMBA 4CPLA 3GVKA 4XJWA 2IAUA 2BF6A 3TI3A 1V0ZA 2YA5A 1V0EA 1IVBA 1QLGA 3CYEA 5EO7A 4XIKA 4BBWA 3SILA 1NCCN 4HZYA 3BEQA 4X49A 1E1AA 4GZXA 2BERA 5B2CA 4K1IA 4O5TA 1DIMA 4KS5A 5GX4A 4QN3A 3TI4A 3SOVA 1NMCA 4FOYA 4QNPA 3Q6TA 5FNRA 2QE8A 3HLHA 1WCSA 1V3DA 2QWGA 3OPZA 5CGJA 2HU0A 1MWEA 3I1CA 5FNUA 3CL0A 1BJIA 1NN2A 4GDJA 2HT8A 4XOGA 4XJAA 1SUUA 4A0PA 5FZJA 3ZGDA 3G4HA 4XHXA 3K37A 1XOGA 1N6DA 2XN4A 4FPOB 1S18A 4FP2A 4XJZA 4CPNA 3V1SA 4CPMA 1V3EA 2IATA 7NN9A 4CPZA 1SLLA 3TIAA 3KYAA 2ZZKA 1W0OA 4XILA 1WP5A 4YZ2A 1Q7FA 2HTYA 2QWCA 2HQSA 2QWBA 5NN9A 2AH2A 1Z4ZA 2G8SA 2F28A 4GZSA 1RWLA 4HHOA 4FQ4A 1U6DX 2F26A 3GVJA 4YW2A 2JKBA 2IVZA 5GX5A 3V64C 4HHQA 3TI8A 4MWQA 4G3NA 1IVDA 1S0IA 4FPGA 4Q6KA 2W5NA 2HTWA 3VNHA 3DR2A 2GVXA 1E8TA 2F25A 2V91A 2VW0A 3SOBB 5HUGA 2ZW9A 1N1SA 3TC9A 3L6VA 3INBA 4IFJA 5H47A 4GEZA 4FPFA 4JMLA 2VK7A 3SREA 3H73A 3V65B 3D11A 4XJ9A 1F8EA 4O5SA 4CPOA 5F9TA 4K1JA 2VK6A 3SALA 4ASCA 1NMAN 2FHRA 2XZJA 2VSMA 1A14N 3A71A 4MWWA 1NNAA 4YZ4A 4QN5A 2GHSA 2SILA 5EO8A 1E8VA 3VNGA 4FPHA 5D9BA 3TI6A 2YA8A 4K1KA 3GVLA 4QN7A 3AMSA 1MS0A 3Q6KA 4ZGCA 2WOZA 4YZ5A 1MS8A 3T1EA 2YA4A 1NSBA 4R40A 3DASA 2VVZA 1F8CA 4WEGA 1C9UA 2HTVA 1N1TA 2FP9A 3NN9A 4PWZA 4GZWA 4QN4A 1N1VA 3K3AA 3E5ZA 3SRGA 4XMIA 2AEQA 3WWAA 2XCYA 1NMBN 2QWDA 2H2NA 4L7CA 1RWIA 2W5OA 2BATA 3PJQA 4MJUA 5F72C 4UF7A 3WDZA 2DYHA 5HUNA 3B7EA 1CRZA 4FOVA 3TICA 3CKZA 4FPLA 4M3MA 4MWJA 4AH4A 1Z4WA 4NN9A 2SLIA 5HUKA 4N1BA 4GNAA 4L7DA 2F0ZA 3SANA 2ISMA 3AMRA 4GN9A 1EURA 2QWAA 1INGA 4B7MA 1L7GA 6NN9A 2IAOA 4X47A 1H6LA 2HT7A 3S2KA 3II7A 4Q1UA 4YW3A 1K32A 2B8HA 4XJRA 4FOWA 1NCDN 1Z50A 2HTQA 1NCAN 1IUCA 2SIMA 4KS3A 4D52C 1MS5A 2IAWA 5GX3A 2P4OA 1Z4VA 3H71A 4XIOA 1INHA 4IN4A 1Z4XA 3H6JA 2VPJA 4J9TA 3LI3A 2VSKA 1IUBA 4B7NA 2HTRA 3HLIA 4GJTA 3JU4A 1W8NA 3K38A 4HZZA 1EUUA 4SLIA 5HUMA 4L7BA 4HIZA 4AGIA 1V0FA 1WCQA 4GZQA 4MWLA 1B9VA 2W38A 4HW6A 3SOQA 1Z4YA 5D9DA 3D12A 2VW2A 4HZWA 2QWKA 2YA6A 1QBIA 1B9TA 5GX1A 1VCJA 1CVMA 1EUTA 4MWXA 1USXA 2QWHA 4YW1A 1S0JA 4GNCA 3ADEA 3W09A 4GN7A 1W0PA 4XYXA 4GB1A 1F8BA 1A4GA 3FW0A 1MS3A 4FPKA 1C5KA 2IASA 1MR5A 1N1YA 2OJHA 4MWVA 4KS1A 1S1DA 4CSDA 4GN8A 2IAXA 3O9KA 2A75A 4MC7A 5HX0A 4FPCA 2FP8A 1POOA 3NO0A 3LI4A 1MS9A 2F13A 2IARA 1N7DA 4M4UA 4MWUA 4D4UA 1XOEA 4YZ1A 2FPCA 1SLIA 2F12A 2VAQA 4XE9A 4AHAA 3S8VA 3K39A 1A4QA 3P5BL 5EX7A 1V2IA 2C4AA 5FNSA 1MZ6A 4B7JA 1N6FA 3H72A 4XHBA 2HU4A 3G4EA 1L7HA 4AGTA 1PJXA 2IAVA 2X9MA 4FPEA 4HZXA 2QWEA 1IVCA 2F24A 4FOQA 4WA4A 2W20A 5B2DA 1SO7A 1NPEA 3TI5A 2IAQA 4CHBA 1OFZA 3SLIA 4XJQA 1L7FA 4IFNX 2F27A 1W21A 2VK5A 4M4VA 4MZEA 3A9HA 1ZI0A 1NNBA 2GVUA 4KS2A 4NCSA 2YDPA 1INVA 2HT5A 1INYA 1NCBN 5GX2A 4YW5A 1W20A 4YW4A 1KITA 2POOA 4GZOA 4GDIA 1NSDA 1INFA 5JYYA 2DG0A 4HZVA 4IFLX 1EUSA 4H52A 4M4NA 1W8OA 2GVWA 3BYCA 3WN7A 1ZGKA 4YY8A 3FVZA 3KGGA 4B7RA 1CQ1A 4MZAA 4K3YA 4GZPA 3S8ZA 2VW1A 1VCUA 4JF7A 4XJ8A 4GZTA 2ZB5A 3HRPA 2F11A 4I00A 4MX0A 1IJQA 2FPBA 1MS4A 2C4LA 2QWFA 3Q6PA 1IVFA 3ZGCA 1INXA 1IVGA
chains in the Genus database with same CATH topology
4D4UA 1IUCA 1IUBA 4AGTA 4D52A 4D52C 5EO8A 4C1YA 4C1YB 4D52B 5EO7A 5H47A 1OFZA 4AH4A 4AHAA 4UOUA 4CSDA 4AGIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D4U A;  1IUC A;  1IUB A;  4AGT A;  4D52 A;  4D52 C;  5EO8 A;  4C1Y A;  4C1Y B;  4D52 B;  5EO7 A;  5H47 A;  1OFZ A;  4AH4 A;  4AHA A;  4UOU A;  4CSD A;  4AGI A; 
#chains in the Genus database with same CATH topology
 4XJU A;  4H53 A;  3TIB A;  4K1H A;  4ZLR A;  3U0S A;  1W1X A;  1N6E A;  1V3B A;  2H2U A;  4FVK A;  1NSC A;  4FPY A;  2DG1 A;  2DSO A;  3A9G A;  1MS1 A;  4FPJ A;  4DGR A;  3O9J A;  1MZ5 A;  2W8B B;  1DIL A;  4X6K A;  3A72 A;  2F10 A;  3S94 A;  4C1Y B;  2CML A;  2YA7 A;  1X2J A;  4D8S A;  4WA3 A;  1B9S A;  2ZB6 A;  5M1Z A;  2FLU X;  4D52 B;  1INW A;  2W8B A;  2XZK A;  2Z32 A;  1IVE A;  2BZD A;  2RKC A;  4ZY3 A;  3LI5 A;  4C1Y A;  3K36 A;  4X4A A;  4IQK A;  5FWW A;  2YDT A;  2IAP A;  4D52 A;  1SNT A;  5GTQ A;  5FNQ A;  4XMB A;  3UC1 A;  2VWD A;  1X2R A;  4FP3 A;  4UOU A;  1CRU A;  3ALW A;  3ALX A;  5FZN A;  2XZI A;  1USR A;  4DG6 A;  4NC5 A;  4XMA A;  4CPY A;  2HTU A;  2AEP A;  3O4P A;  4GNB A;  4IYG A;  3NSS A;  2AGS A;  2QWI A;  1V3C A;  3CL2 A;  1F8D A;  5D9C A;  1E8U A;  4QN6 A;  2F29 A;  2GVV A;  4FJ6 A;  1V04 A;  3WW9 A;  2ZWA A;  3B69 A;  4MWR A;  4YZ3 A;  4WA5 A;  1NNC A;  4MJV A;  4MWY A;  4KS4 A;  4CH9 A;  4B7Q A;  4FZH A;  3IAX A;  5FNT A;  2QWJ A;  4WEF A;  4IMB A;  4CPL A;  3GVK A;  4XJW A;  2IAU A;  2BF6 A;  3TI3 A;  1V0Z A;  2YA5 A;  1V0E A;  1IVB A;  1QLG A;  3CYE A;  5EO7 A;  4XIK A;  4BBW A;  3SIL A;  1NCC N;  4HZY A;  3BEQ A;  4X49 A;  1E1A A;  4GZX A;  2BER A;  5B2C A;  4K1I A;  4O5T A;  1DIM A;  4KS5 A;  5GX4 A;  4QN3 A;  3TI4 A;  3SOV A;  1NMC A;  4FOY A;  4QNP A;  3Q6T A;  5FNR A;  2QE8 A;  3HLH A;  1WCS A;  1V3D A;  2QWG A;  3OPZ A;  5CGJ A;  2HU0 A;  1MWE A;  3I1C A;  5FNU A;  3CL0 A;  1BJI A;  1NN2 A;  4GDJ A;  2HT8 A;  4XOG A;  4XJA A;  1SUU A;  4A0P A;  5FZJ A;  3ZGD A;  3G4H A;  4XHX A;  3K37 A;  1XOG A;  1N6D A;  2XN4 A;  4FPO B;  1S18 A;  4FP2 A;  4XJZ A;  4CPN A;  3V1S A;  4CPM A;  1V3E A;  2IAT A;  7NN9 A;  4CPZ A;  1SLL A;  3TIA A;  3KYA A;  2ZZK A;  1W0O A;  4XIL A;  1WP5 A;  4YZ2 A;  1Q7F A;  2HTY A;  2QWC A;  2HQS A;  2QWB A;  5NN9 A;  2AH2 A;  1Z4Z A;  2G8S A;  2F28 A;  4GZS A;  1RWL A;  4HHO A;  4FQ4 A;  1U6D X;  2F26 A;  3GVJ A;  4YW2 A;  2JKB A;  2IVZ A;  5GX5 A;  3V64 C;  4HHQ A;  3TI8 A;  4MWQ A;  4G3N A;  1IVD A;  1S0I A;  4FPG A;  4Q6K A;  2W5N A;  2HTW A;  3VNH A;  3DR2 A;  2GVX A;  1E8T A;  2F25 A;  2V91 A;  2VW0 A;  3SOB B;  5HUG A;  2ZW9 A;  1N1S A;  3TC9 A;  3L6V A;  3INB A;  4IFJ A;  5H47 A;  4GEZ A;  4FPF A;  4JML A;  2VK7 A;  3SRE A;  3H73 A;  3V65 B;  3D11 A;  4XJ9 A;  1F8E A;  4O5S A;  4CPO A;  5F9T A;  4K1J A;  2VK6 A;  3SAL A;  4ASC A;  1NMA N;  2FHR A;  2XZJ A;  2VSM A;  1A14 N;  3A71 A;  4MWW A;  1NNA A;  4YZ4 A;  4QN5 A;  2GHS A;  2SIL A;  5EO8 A;  1E8V A;  3VNG A;  4FPH A;  5D9B A;  3TI6 A;  2YA8 A;  4K1K A;  3GVL A;  4QN7 A;  3AMS A;  1MS0 A;  3Q6K A;  4ZGC A;  2WOZ A;  4YZ5 A;  1MS8 A;  3T1E A;  2YA4 A;  1NSB A;  4R40 A;  3DAS A;  2VVZ A;  1F8C A;  4WEG A;  1C9U A;  2HTV A;  1N1T A;  2FP9 A;  3NN9 A;  4PWZ A;  4GZW A;  4QN4 A;  1N1V A;  3K3A A;  3E5Z A;  3SRG A;  4XMI A;  2AEQ A;  3WWA A;  2XCY A;  1NMB N;  2QWD A;  2H2N A;  4L7C A;  1RWI A;  2W5O A;  2BAT A;  3PJQ A;  4MJU A;  5F72 C;  4UF7 A;  3WDZ A;  2DYH A;  5HUN A;  3B7E A;  1CRZ A;  4FOV A;  3TIC A;  3CKZ A;  4FPL A;  4M3M A;  4MWJ A;  4AH4 A;  1Z4W A;  4NN9 A;  2SLI A;  5HUK A;  4N1B A;  4GNA A;  4L7D A;  2F0Z A;  3SAN A;  2ISM A;  3AMR A;  4GN9 A;  1EUR A;  2QWA A;  1ING A;  4B7M A;  1L7G A;  6NN9 A;  2IAO A;  4X47 A;  1H6L A;  2HT7 A;  3S2K A;  3II7 A;  4Q1U A;  4YW3 A;  1K32 A;  2B8H A;  4XJR A;  4FOW A;  1NCD N;  1Z50 A;  2HTQ A;  1NCA N;  1IUC A;  2SIM A;  4KS3 A;  4D52 C;  1MS5 A;  2IAW A;  5GX3 A;  2P4O A;  1Z4V A;  3H71 A;  4XIO A;  1INH A;  4IN4 A;  1Z4X A;  3H6J A;  2VPJ A;  4J9T A;  3LI3 A;  2VSK A;  1IUB A;  4B7N A;  2HTR A;  3HLI A;  4GJT A;  3JU4 A;  1W8N A;  3K38 A;  4HZZ A;  1EUU A;  4SLI A;  5HUM A;  4L7B A;  4HIZ A;  4AGI A;  1V0F A;  1WCQ A;  4GZQ A;  4MWL A;  1B9V A;  2W38 A;  4HW6 A;  3SOQ A;  1Z4Y A;  5D9D A;  3D12 A;  2VW2 A;  4HZW A;  2QWK A;  2YA6 A;  1QBI A;  1B9T A;  5GX1 A;  1VCJ A;  1CVM A;  1EUT A;  4MWX A;  1USX A;  2QWH A;  4YW1 A;  1S0J A;  4GNC A;  3ADE A;  3W09 A;  4GN7 A;  1W0P A;  4XYX A;  4GB1 A;  1F8B A;  1A4G A;  3FW0 A;  1MS3 A;  4FPK A;  1C5K A;  2IAS A;  1MR5 A;  1N1Y A;  2OJH A;  4MWV A;  4KS1 A;  1S1D A;  4CSD A;  4GN8 A;  2IAX A;  3O9K A;  2A75 A;  4MC7 A;  5HX0 A;  4FPC A;  2FP8 A;  1POO A;  3NO0 A;  3LI4 A;  1MS9 A;  2F13 A;  2IAR A;  1N7D A;  4M4U A;  4MWU A;  4D4U A;  1XOE A;  4YZ1 A;  2FPC A;  1SLI A;  2F12 A;  2VAQ A;  4XE9 A;  4AHA A;  3S8V A;  3K39 A;  1A4Q A;  3P5B L;  5EX7 A;  1V2I A;  2C4A A;  5FNS A;  1MZ6 A;  4B7J A;  1N6F A;  3H72 A;  4XHB A;  2HU4 A;  3G4E A;  1L7H A;  4AGT A;  1PJX A;  2IAV A;  2X9M A;  4FPE A;  4HZX A;  2QWE A;  1IVC A;  2F24 A;  4FOQ A;  4WA4 A;  2W20 A;  5B2D A;  1SO7 A;  1NPE A;  3TI5 A;  2IAQ A;  4CHB A;  1OFZ A;  3SLI A;  4XJQ A;  1L7F A;  4IFN X;  2F27 A;  1W21 A;  2VK5 A;  4M4V A;  4MZE A;  3A9H A;  1ZI0 A;  1NNB A;  2GVU A;  4KS2 A;  4NCS A;  2YDP A;  1INV A;  2HT5 A;  1INY A;  1NCB N;  5GX2 A;  4YW5 A;  1W20 A;  4YW4 A;  1KIT A;  2POO A;  4GZO A;  4GDI A;  1NSD A;  1INF A;  5JYY A;  2DG0 A;  4HZV A;  4IFL X;  1EUS A;  4H52 A;  4M4N A;  1W8O A;  2GVW A;  3BYC A;  3WN7 A;  1ZGK A;  4YY8 A;  3FVZ A;  3KGG A;  4B7R A;  1CQ1 A;  4MZA A;  4K3Y A;  4GZP A;  3S8Z A;  2VW1 A;  1VCU A;  4JF7 A;  4XJ8 A;  4GZT A;  2ZB5 A;  3HRP A;  2F11 A;  4I00 A;  4MX0 A;  1IJQ A;  2FPB A;  1MS4 A;  2C4L A;  2QWF A;  3Q6P A;  1IVF A;  3ZGC A;  1INX A;  1IVG A; 
#chains in the Genus database with same CATH homology
 4D4U A;  1IUC A;  1IUB A;  4AGT A;  4D52 A;  4D52 C;  5EO8 A;  4C1Y A;  4C1Y B;  4D52 B;  5EO7 A;  5H47 A;  1OFZ A;  4AH4 A;  4AHA A;  4UOU A;  4CSD A;  4AGI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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