4C26A

Solution nmr structure of the hica toxin from burkholderia pseudomallei
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
DRTGSELMNSSKLIRMLEEDGWRLVRVTGSAHHFKHPKKPGLVTVPHPKKDLPIGTVKSIQKSAGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords HICA
publication title The Hica Toxin from Burkholderia Pseudomallei Has a Role in Persister Cell Formation.
pubmed doi rcsb
source organism Burkholderia pseudomallei
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2013-08-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07927 HicA_toxin HicA toxin of bacterial toxin-antitoxin,
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.30 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Hypothetical protein. 4c26A00
4P78C 1WHZA 4C26A
chains in the Genus database with same CATH superfamily
4C26A 3IMOA 3GD9A 3OEQA 3T3TA 2FUG7 3T3KA 2GA5A 3T3LA 4LP1A 4P78C 3IAM7 3GD0A 1EKGA 2EFFA 4LK8A 4JPDA 3S4MA 2FQLA 1D2MA 1LY7A 3SSEA 3I9V7 3SSDA 3A5PA 3T3XA 3S5FA 3T3JA 1EW4A 3IAS7 4EC2A 1SOYA 1WHZA 3S5DA 3S5EA 3SSCA 3OERA 1V5RA 4HEA7 4HS5A 2P1XA
chains in the Genus database with same CATH topology
4P78C 2KKUA 4C26A 1WHZA 2DP9A 1S04A 1WK2A 1XNEA 2Z0TA 3IUWA 1TE7A 2E5OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P78 C;  1WHZ A;  4C26 A; 
#chains in the Genus database with same CATH topology
 4C26 A;  3IMO A;  3GD9 A;  3OEQ A;  3T3T A;  2FUG 7;  3T3K A;  2GA5 A;  3T3L A;  4LP1 A;  4P78 C;  3IAM 7;  3GD0 A;  1EKG A;  2EFF A;  4LK8 A;  4JPD A;  3S4M A;  2FQL A;  1D2M A;  1LY7 A;  3SSE A;  3I9V 7;  3SSD A;  3A5P A;  3T3X A;  3S5F A;  3T3J A;  1EW4 A;  3IAS 7;  4EC2 A;  1SOY A;  1WHZ A;  3S5D A;  3S5E A;  3SSC A;  3OER A;  1V5R A;  4HEA 7;  4HS5 A;  2P1X A; 
#chains in the Genus database with same CATH homology
 4P78 C;  2KKU A;  4C26 A;  1WHZ A;  2DP9 A;  1S04 A;  1WK2 A;  1XNE A;  2Z0T A;  3IUW A;  1TE7 A;  2E5O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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