4C31B

Nup1:sac3:sus1 complex
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
92
structure length
92
Chain Sequence
DTAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVDT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords NUCLEAR MRNA EXPORT PROTEIN SAC3
publication title Structural Basis for Binding the Trex2 Complex to Nuclear Pores, Gal1 Localisation and Mrna Export.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 37
structure length 92
sequence length 92
chains with identical sequence E
ec nomenclature
pdb deposition date 2013-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10163 EnY2 Transcription factor e(y)2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.140 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4c31B00
4WA6B 4W4UB 4C31B 4MBEC 3FWBC 4ZUXV 3KJLA 3MHHB 3KIKA 3FWCC 3M99C 4FK5B 3MHSB 4DHXB 4FIPB 4FJCB
chains in the Genus database with same CATH superfamily
1E7GA 4WA6B 1E7BA 2EFCA 2ROHA 2DBWA 4Z69A 1J7EA 3H37A 4N3ZA 1SB0A 3ICXA 3UIVA 3M99C 4DHXB 2QHBA 5GHKA 2KWFA 2AJEA 5DQFA 1KXPD 2BXBA 5IIHA 3NMUA 3TDLA 2I2ZA 4GDLB 4EMXA 1HK2A 3FWCC 4NAWB 4OT2A 2XSIA 3JQZA 1KW2A 3LU8A 2BXPA 2BXFA 2DYOA 2LQIA 4I9OA 1BKEA 1HK3A 1IJGA 2BXKA 3CX9A 4K71A 4OTUA 4ZC6A 2JUHA 5IIUA 1H9ZA 2XVWA 1HK4A 1HK5A 3A73A 4G04A 4F5UA 4BY9C 4BKEA 2E0XA 1MIVA 1MM8A 1AO6A 3NVKA 1E7IA 1N5UA 4G01A 4GDXA 4GG2A 3LU7A 2NQOA 3V03A 1BM0A 4TQ0A 4F5SA 5IFOA 5GIOA 1JNBA 1E7CA 2V36A 4N0UD 1H5WA 4S1YA 2OT3A 1E7EA 5IIXA 1TXUA 2EFDA 2LXSA 5DBYA 3SQJA 2DYMA 2EFHA 3NVMA 4DM0A 5B5TA 4LUHA 2GUTA 3SIVB 1MUSA 2VDBA 4OTTA 4G03A 3V09A 4L9QA 1KDXA 4OR0A 1MA9A 2BXOA 2Z8IA 3GQXA 2BXAA 1MIWA 5GINA 2I30A 2XVVA 3WHRA 3BPJA 4MBEC 5IJ5A 2XVUA 4L8UA 3MHHB 3KIKA 4ZCGA 2DG5A 4IW1A 2QMCA 4F5VA 4GDKB 2NNWA 2XMOA 2BXMA 4ZBKA 1BJ5A 1E78A 5ID7A 3A75A 4E99A 4W4UB 3G9KD 5ID9A 1FOUA 3GQUA 2VUFA 3MHSB 2BXLA 2BXIA 1MUHA 4JK4A 1E7HA 3NVIA 2BXGA 3FWBC 3SIUB 2BX8A 5IJEA 4LB9A 4ZUXV 2Z8KA 3VQIA 4ZBRA 4FK5B 3PLAA 2DBXA 4FJCB 4J2VA 3KJLA 4M70B 2CKXA 3JRYA 2BXQA 4L9KA 4F5TA 1J78A 2BXCA 4FIPB 5BPKA 1O9XA 4LA0A 4LUFA 2K0NA 4IW2A 5FUOA 5IJFA 4HGMB 4Z9OA 2OZBB 2VUEA 1LNSA 2LXTA 1E7FA 1UORA 1HK1A 2KBZA 2QM6A 4C31B 2BXHA 1GNJA 3V08A 2Z8JA 2YDFA 2EFEA 2XW0A 4ZBQA 5HOZA 2DBUA 1HA2A 3LU6A 1VFIA 2BXNA 2BXEA 2LOQA 3ECPA 4D7XA 1TF0A 3W1SA 3B9MA 5GIPA 4K2CA 3GA9L 3H3AA 4TQ1A 2BXDA 3FNMA 3WHSA 1LOTA 2XVQA 1MIYA 2AGHB 1GNIA 2XW1A 4LB2A 2E0YA 3WHQA 1VZSA 3B9LA 4PO0A 1NT2B 5D7GA 4N0FD 4HGKA 2LQHA 1E7AA
chains in the Genus database with same CATH topology
1E7GA 4WA6B 1E7BA 2EFCA 2ROHA 2DBWA 4Z69A 1J7EA 3H37A 4N3ZA 3ICXA 3UIVA 3M99C 4DHXB 2QHBA 5GHKA 5DQFA 2AJEA 1KXPD 2BXBA 5IIHA 3NMUA 3TDLA 2I2ZA 4GDLB 4EMXA 1HK2A 3FWCC 4NAWB 4OT2A 2XSIA 3JQZA 1KW2A 3LU8A 2BXPA 2BXFA 2DYOA 4K71A 1BKEA 1HK3A 1IJGA 2BXKA 3CX9A 4ZC6A 4OTUA 5IIUA 2JUHA 1H9ZA 2XVWA 1HK4A 1HK5A 3A73A 4G04A 4F5UA 4BY9C 4BKEA 2E0XA 1MIVA 1AO6A 3NVKA 1E7IA 1N5UA 4G01A 4GDXA 4GG2A 3LU7A 2NQOA 3V03A 1BM0A 4TQ0A 4F5SA 5IFOA 5GIOA 1JNBA 1E7CA 2V36A 4N0UD 1H5WA 4S1YA 2OT3A 1E7EA 5IIXA 1TXUA 2EFDA 5DBYA 3SQJA 2DYMA 2EFHA 3NVMA 5B5TA 4LUHA 3SIVB 2VDBA 4OTTA 4G03A 3V09A 4L9QA 4OR0A 1MA9A 2BXOA 2Z8IA 3GQXA 2BXAA 1MIWA 5GINA 2I30A 2XVVA 3WHRA 4MBEC 5IJ5A 2XVUA 4L8UA 3MHHB 3KIKA 4ZCGA 2DG5A 4IW1A 2QMCA 4F5VA 4GDKB 2NNWA 2XMOA 2BXMA 4ZBKA 1BJ5A 1E78A 5ID7A 3A75A 4E99A 4W4UB 3G9KD 5ID9A 1FOUA 3GQUA 2VUFA 3MHSB 2BXLA 2BXIA 4JK4A 1E7HA 3NVIA 2BXGA 3FWBC 3SIUB 2BX8A 5IJEA 4LB9A 2Z8KA 3VQIA 4ZBRA 4FK5B 3PLAA 2DBXA 4FJCB 4J2VA 3KJLA 4M70B 2CKXA 3JRYA 2BXQA 4L9KA 4F5TA 1J78A 2BXCA 4FIPB 5BPKA 1O9XA 4LA0A 4LUFA 4IW2A 5FUOA 5IJFA 4HGMB 4Z9OA 2OZBB 2VUEA 1LNSA 1E7FA 1UORA 1HK1A 2KBZA 2QM6A 4C31B 2BXHA 1GNJA 3V08A 2Z8JA 2YDFA 2EFEA 2XW0A 4ZBQA 5HOZA 2DBUA 1HA2A 3LU6A 1VFIA 2BXNA 2BXEA 2LOQA 1TF0A 3W1SA 3B9MA 5GIPA 4K2CA 3GA9L 3H3AA 4TQ1A 2BXDA 3FNMA 3WHSA 1LOTA 2XVQA 1MIYA 1GNIA 2XW1A 4LB2A 2E0YA 3WHQA 1VZSA 3B9LA 4PO0A 1NT2B 5D7GA 4N0FD 4HGKA 4ZUXV 1E7AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WA6 B;  4W4U B;  4C31 B;  4MBE C;  3FWB C;  4ZUX V;  3KJL A;  3MHH B;  3KIK A;  3FWC C;  3M99 C;  4FK5 B;  3MHS B;  4DHX B;  4FIP B;  4FJC B; 
#chains in the Genus database with same CATH topology
 1E7G A;  4WA6 B;  1E7B A;  2EFC A;  2ROH A;  2DBW A;  4Z69 A;  1J7E A;  3H37 A;  4N3Z A;  1SB0 A;  3ICX A;  3UIV A;  3M99 C;  4DHX B;  2QHB A;  5GHK A;  2KWF A;  2AJE A;  5DQF A;  1KXP D;  2BXB A;  5IIH A;  3NMU A;  3TDL A;  2I2Z A;  4GDL B;  4EMX A;  1HK2 A;  3FWC C;  4NAW B;  4OT2 A;  2XSI A;  3JQZ A;  1KW2 A;  3LU8 A;  2BXP A;  2BXF A;  2DYO A;  2LQI A;  4I9O A;  1BKE A;  1HK3 A;  1IJG A;  2BXK A;  3CX9 A;  4K71 A;  4OTU A;  4ZC6 A;  2JUH A;  5IIU A;  1H9Z A;  2XVW A;  1HK4 A;  1HK5 A;  3A73 A;  4G04 A;  4F5U A;  4BY9 C;  4BKE A;  2E0X A;  1MIV A;  1MM8 A;  1AO6 A;  3NVK A;  1E7I A;  1N5U A;  4G01 A;  4GDX A;  4GG2 A;  3LU7 A;  2NQO A;  3V03 A;  1BM0 A;  4TQ0 A;  4F5S A;  5IFO A;  5GIO A;  1JNB A;  1E7C A;  2V36 A;  4N0U D;  1H5W A;  4S1Y A;  2OT3 A;  1E7E A;  5IIX A;  1TXU A;  2EFD A;  2LXS A;  5DBY A;  3SQJ A;  2DYM A;  2EFH A;  3NVM A;  4DM0 A;  5B5T A;  4LUH A;  2GUT A;  3SIV B;  1MUS A;  2VDB A;  4OTT A;  4G03 A;  3V09 A;  4L9Q A;  1KDX A;  4OR0 A;  1MA9 A;  2BXO A;  2Z8I A;  3GQX A;  2BXA A;  1MIW A;  5GIN A;  2I30 A;  2XVV A;  3WHR A;  3BPJ A;  4MBE C;  5IJ5 A;  2XVU A;  4L8U A;  3MHH B;  3KIK A;  4ZCG A;  2DG5 A;  4IW1 A;  2QMC A;  4F5V A;  4GDK B;  2NNW A;  2XMO A;  2BXM A;  4ZBK A;  1BJ5 A;  1E78 A;  5ID7 A;  3A75 A;  4E99 A;  4W4U B;  3G9K D;  5ID9 A;  1FOU A;  3GQU A;  2VUF A;  3MHS B;  2BXL A;  2BXI A;  1MUH A;  4JK4 A;  1E7H A;  3NVI A;  2BXG A;  3FWB C;  3SIU B;  2BX8 A;  5IJE A;  4LB9 A;  4ZUX V;  2Z8K A;  3VQI A;  4ZBR A;  4FK5 B;  3PLA A;  2DBX A;  4FJC B;  4J2V A;  3KJL A;  4M70 B;  2CKX A;  3JRY A;  2BXQ A;  4L9K A;  4F5T A;  1J78 A;  2BXC A;  4FIP B;  5BPK A;  1O9X A;  4LA0 A;  4LUF A;  2K0N A;  4IW2 A;  5FUO A;  5IJF A;  4HGM B;  4Z9O A;  2OZB B;  2VUE A;  1LNS A;  2LXT A;  1E7F A;  1UOR A;  1HK1 A;  2KBZ A;  2QM6 A;  4C31 B;  2BXH A;  1GNJ A;  3V08 A;  2Z8J A;  2YDF A;  2EFE A;  2XW0 A;  4ZBQ A;  5HOZ A;  2DBU A;  1HA2 A;  3LU6 A;  1VFI A;  2BXN A;  2BXE A;  2LOQ A;  3ECP A;  4D7X A;  1TF0 A;  3W1S A;  3B9M A;  5GIP A;  4K2C A;  3GA9 L;  3H3A A;  4TQ1 A;  2BXD A;  3FNM A;  3WHS A;  1LOT A;  2XVQ A;  1MIY A;  2AGH B;  1GNI A;  2XW1 A;  4LB2 A;  2E0Y A;  3WHQ A;  1VZS A;  3B9L A;  4PO0 A;  1NT2 B;  5D7G A;  4N0F D;  4HGK A;  2LQH A;  1E7A A; 
#chains in the Genus database with same CATH homology
 1E7G A;  4WA6 B;  1E7B A;  2EFC A;  2ROH A;  2DBW A;  4Z69 A;  1J7E A;  3H37 A;  4N3Z A;  3ICX A;  3UIV A;  3M99 C;  4DHX B;  2QHB A;  5GHK A;  5DQF A;  2AJE A;  1KXP D;  2BXB A;  5IIH A;  3NMU A;  3TDL A;  2I2Z A;  4GDL B;  4EMX A;  1HK2 A;  3FWC C;  4NAW B;  4OT2 A;  2XSI A;  3JQZ A;  1KW2 A;  3LU8 A;  2BXP A;  2BXF A;  2DYO A;  4K71 A;  1BKE A;  1HK3 A;  1IJG A;  2BXK A;  3CX9 A;  4ZC6 A;  4OTU A;  5IIU A;  2JUH A;  1H9Z A;  2XVW A;  1HK4 A;  1HK5 A;  3A73 A;  4G04 A;  4F5U A;  4BY9 C;  4BKE A;  2E0X A;  1MIV A;  1AO6 A;  3NVK A;  1E7I A;  1N5U A;  4G01 A;  4GDX A;  4GG2 A;  3LU7 A;  2NQO A;  3V03 A;  1BM0 A;  4TQ0 A;  4F5S A;  5IFO A;  5GIO A;  1JNB A;  1E7C A;  2V36 A;  4N0U D;  1H5W A;  4S1Y A;  2OT3 A;  1E7E A;  5IIX A;  1TXU A;  2EFD A;  5DBY A;  3SQJ A;  2DYM A;  2EFH A;  3NVM A;  5B5T A;  4LUH A;  3SIV B;  2VDB A;  4OTT A;  4G03 A;  3V09 A;  4L9Q A;  4OR0 A;  1MA9 A;  2BXO A;  2Z8I A;  3GQX A;  2BXA A;  1MIW A;  5GIN A;  2I30 A;  2XVV A;  3WHR A;  4MBE C;  5IJ5 A;  2XVU A;  4L8U A;  3MHH B;  3KIK A;  4ZCG A;  2DG5 A;  4IW1 A;  2QMC A;  4F5V A;  4GDK B;  2NNW A;  2XMO A;  2BXM A;  4ZBK A;  1BJ5 A;  1E78 A;  5ID7 A;  3A75 A;  4E99 A;  4W4U B;  3G9K D;  5ID9 A;  1FOU A;  3GQU A;  2VUF A;  3MHS B;  2BXL A;  2BXI A;  4JK4 A;  1E7H A;  3NVI A;  2BXG A;  3FWB C;  3SIU B;  2BX8 A;  5IJE A;  4LB9 A;  2Z8K A;  3VQI A;  4ZBR A;  4FK5 B;  3PLA A;  2DBX A;  4FJC B;  4J2V A;  3KJL A;  4M70 B;  2CKX A;  3JRY A;  2BXQ A;  4L9K A;  4F5T A;  1J78 A;  2BXC A;  4FIP B;  5BPK A;  1O9X A;  4LA0 A;  4LUF A;  4IW2 A;  5FUO A;  5IJF A;  4HGM B;  4Z9O A;  2OZB B;  2VUE A;  1LNS A;  1E7F A;  1UOR A;  1HK1 A;  2KBZ A;  2QM6 A;  4C31 B;  2BXH A;  1GNJ A;  3V08 A;  2Z8J A;  2YDF A;  2EFE A;  2XW0 A;  4ZBQ A;  5HOZ A;  2DBU A;  1HA2 A;  3LU6 A;  1VFI A;  2BXN A;  2BXE A;  2LOQ A;  1TF0 A;  3W1S A;  3B9M A;  5GIP A;  4K2C A;  3GA9 L;  3H3A A;  4TQ1 A;  2BXD A;  3FNM A;  3WHS A;  1LOT A;  2XVQ A;  1MIY A;  1GNI A;  2XW1 A;  4LB2 A;  2E0Y A;  3WHQ A;  1VZS A;  3B9L A;  4PO0 A;  1NT2 B;  5D7G A;  4N0F D;  4HGK A;  4ZUX V;  1E7A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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